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Search of human proteins with 19923479
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923479 suppressor of fused [Homo sapiens]
(484 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19923479 suppressor of fused [Homo sapiens] 1005 0.0
gi|37675283 adaptor-related protein complex 4, epsilon 1 subunit... 38 0.024
gi|7019549 T-box 21 [Homo sapiens] 37 0.040
gi|239756389 PREDICTED: hypothetical protein XP_002344912 [Homo ... 37 0.040
gi|239750906 PREDICTED: hypothetical protein XP_002347612 [Homo ... 37 0.040
gi|239745304 PREDICTED: hypothetical protein XP_002343433 [Homo ... 37 0.040
gi|223941923 OTU domain containing 1 [Homo sapiens] 35 0.15
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 35 0.20
gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens] 35 0.20
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 34 0.26
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 34 0.26
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 34 0.26
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 34 0.26
gi|116805334 Ras-induced senescence 1 [Homo sapiens] 34 0.26
gi|18641360 collectin sub-family member 12 [Homo sapiens] 34 0.34
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 33 0.58
gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo sap... 33 0.58
gi|39995107 Fas-activated serine/threonine kinase isoform 4 [Hom... 33 0.58
gi|118498339 EMI domain containing 2 [Homo sapiens] 33 0.58
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 33 0.76
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 32 0.99
gi|17158023 hypothetical protein LOC85395 [Homo sapiens] 32 0.99
gi|169214023 PREDICTED: hypothetical protein [Homo sapiens] 32 1.3
gi|169214468 PREDICTED: hypothetical protein [Homo sapiens] 32 1.3
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 32 1.3
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 32 1.7
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 32 1.7
gi|115387123 protocadherin 15 isoform CD1-4 precursor [Homo sapi... 32 1.7
gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sap... 32 1.7
gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapi... 32 1.7
>gi|19923479 suppressor of fused [Homo sapiens]
Length = 484
Score = 1005 bits (2599), Expect = 0.0
Identities = 484/484 (100%), Positives = 484/484 (100%)
Query: 1 MAELRPSGAPGPTAPPAPGPTAPPAFASLFPPGLHAIYGECRRLYPDQPNPLQVTAIVKY 60
MAELRPSGAPGPTAPPAPGPTAPPAFASLFPPGLHAIYGECRRLYPDQPNPLQVTAIVKY
Sbjct: 1 MAELRPSGAPGPTAPPAPGPTAPPAFASLFPPGLHAIYGECRRLYPDQPNPLQVTAIVKY 60
Query: 61 WLGGPDPLDYVSMYRNVGSPSANIPEHWHYISFGLSDLYGDNRVHEFTGTDGPSGFGFEL 120
WLGGPDPLDYVSMYRNVGSPSANIPEHWHYISFGLSDLYGDNRVHEFTGTDGPSGFGFEL
Sbjct: 61 WLGGPDPLDYVSMYRNVGSPSANIPEHWHYISFGLSDLYGDNRVHEFTGTDGPSGFGFEL 120
Query: 121 TFRLKRETGESAPPTWPAELMQGLARYVFQSENTFCSGDHVSWHSPLDNSESRIQHMLLT 180
TFRLKRETGESAPPTWPAELMQGLARYVFQSENTFCSGDHVSWHSPLDNSESRIQHMLLT
Sbjct: 121 TFRLKRETGESAPPTWPAELMQGLARYVFQSENTFCSGDHVSWHSPLDNSESRIQHMLLT 180
Query: 181 EDPQMQPVQTPFGVVTFLQIVGVCTEELHSAQQWNGQGILELLRTVPIAGGPWLITDMRR 240
EDPQMQPVQTPFGVVTFLQIVGVCTEELHSAQQWNGQGILELLRTVPIAGGPWLITDMRR
Sbjct: 181 EDPQMQPVQTPFGVVTFLQIVGVCTEELHSAQQWNGQGILELLRTVPIAGGPWLITDMRR 240
Query: 241 GETIFEIDPHLQERVDKGIETDGSNLSGVSAKCAWDDLSRPPEDDEDSRSICIGTQPRRL 300
GETIFEIDPHLQERVDKGIETDGSNLSGVSAKCAWDDLSRPPEDDEDSRSICIGTQPRRL
Sbjct: 241 GETIFEIDPHLQERVDKGIETDGSNLSGVSAKCAWDDLSRPPEDDEDSRSICIGTQPRRL 300
Query: 301 SGKDTEQIRETLRRGLEINSKPVLPPINPQRQNGLAHDRAPSRKDSLESDSSTAIIPHEL 360
SGKDTEQIRETLRRGLEINSKPVLPPINPQRQNGLAHDRAPSRKDSLESDSSTAIIPHEL
Sbjct: 301 SGKDTEQIRETLRRGLEINSKPVLPPINPQRQNGLAHDRAPSRKDSLESDSSTAIIPHEL 360
Query: 361 IRTRQLESVHLKFNQESGALIPLCLRGRLLHGRHFTYKSITGDMAITFVSTGVEGAFATE 420
IRTRQLESVHLKFNQESGALIPLCLRGRLLHGRHFTYKSITGDMAITFVSTGVEGAFATE
Sbjct: 361 IRTRQLESVHLKFNQESGALIPLCLRGRLLHGRHFTYKSITGDMAITFVSTGVEGAFATE 420
Query: 421 EHPYAAHGPWLQILLTEEFVEKMLEDLEDLTSPEEFKLPKEYSWPEKKLKVSILPDVVFD 480
EHPYAAHGPWLQILLTEEFVEKMLEDLEDLTSPEEFKLPKEYSWPEKKLKVSILPDVVFD
Sbjct: 421 EHPYAAHGPWLQILLTEEFVEKMLEDLEDLTSPEEFKLPKEYSWPEKKLKVSILPDVVFD 480
Query: 481 SPLH 484
SPLH
Sbjct: 481 SPLH 484
>gi|37675283 adaptor-related protein complex 4, epsilon 1 subunit
[Homo sapiens]
Length = 1137
Score = 37.7 bits (86), Expect = 0.024
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 323 VLPPINPQRQNGLAHDRAPSRKDSLESDSSTAIIPHELIRTRQLESVHLKF-----NQES 377
++P + P ++ L H + R+ ++ A+ LI Q++ +H+KF +++
Sbjct: 165 MIPAVLPLIEDKLQHSKEIVRRKAV-----LALYKFHLIAPNQVQHIHIKFRKALCDRDV 219
Query: 378 GAL-IPLCLRGRLLHGRHFTYKSITGDMAITFVSTGVEGAFATEEHPYAAHGPWLQILL 435
G + L + R++ YK +TG +T + V G E + ++ PWLQI L
Sbjct: 220 GVMAASLHIYLRMIKENSSGYKDLTGSF-VTILKQVVGGKLPVEFNYHSVPAPWLQIQL 277
>gi|7019549 T-box 21 [Homo sapiens]
Length = 535
Score = 37.0 bits (84), Expect = 0.040
Identities = 22/71 (30%), Positives = 27/71 (38%)
Query: 15 PPAPGPTAPPAFASLFPPGLHAIYGECRRLYPDQPNPLQVTAIVKYWLGGPDPLDYVSMY 74
P PGP + P L Y R YPD P + YWLG P Y + +
Sbjct: 340 PSPPGPNCQFLGGDHYSPLLPNQYPVPSRFYPDLPGQAKDVVPQAYWLGAPRDHSYEAEF 399
Query: 75 RNVGSPSANIP 85
R V A +P
Sbjct: 400 RAVSMKPAFLP 410
>gi|239756389 PREDICTED: hypothetical protein XP_002344912 [Homo
sapiens]
Length = 265
Score = 37.0 bits (84), Expect = 0.040
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 183 PQMQPVQTPFGVVTFLQIVGVCTEELHSAQQWNGQGILELLRTVPIAGGPWLITDMRRGE 242
P +QPVQ +GV T ++ V +L Q + GIL+ IA ++ + R+GE
Sbjct: 176 PIVQPVQRWWGVATHHKLDAVLQAQLRLLQAHHTWGILDSEGNTGIAHAHHVLCNARQGE 235
Query: 243 TIFEIDPHLQERVDKGIETDGSNLSGVSAKC 273
I + H+ +R + DG N+ V C
Sbjct: 236 AIV-LTRHIHQR-----QVDGMNIGPVQIGC 260
>gi|239750906 PREDICTED: hypothetical protein XP_002347612 [Homo
sapiens]
Length = 265
Score = 37.0 bits (84), Expect = 0.040
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 183 PQMQPVQTPFGVVTFLQIVGVCTEELHSAQQWNGQGILELLRTVPIAGGPWLITDMRRGE 242
P +QPVQ +GV T ++ V +L Q + GIL+ IA ++ + R+GE
Sbjct: 176 PIVQPVQRWWGVATHHKLDAVLQAQLRLLQAHHTWGILDSEGNTGIAHAHHVLCNARQGE 235
Query: 243 TIFEIDPHLQERVDKGIETDGSNLSGVSAKC 273
I + H+ +R + DG N+ V C
Sbjct: 236 AIV-LTRHIHQR-----QVDGMNIGPVQIGC 260
>gi|239745304 PREDICTED: hypothetical protein XP_002343433 [Homo
sapiens]
Length = 265
Score = 37.0 bits (84), Expect = 0.040
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 183 PQMQPVQTPFGVVTFLQIVGVCTEELHSAQQWNGQGILELLRTVPIAGGPWLITDMRRGE 242
P +QPVQ +GV T ++ V +L Q + GIL+ IA ++ + R+GE
Sbjct: 176 PIVQPVQRWWGVATHHKLDAVLQAQLRLLQAHHTWGILDSEGNTGIAHAHHVLCNARQGE 235
Query: 243 TIFEIDPHLQERVDKGIETDGSNLSGVSAKC 273
I + H+ +R + DG N+ V C
Sbjct: 236 AIV-LTRHIHQR-----QVDGMNIGPVQIGC 260
>gi|223941923 OTU domain containing 1 [Homo sapiens]
Length = 481
Score = 35.0 bits (79), Expect = 0.15
Identities = 18/29 (62%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 6 PSGAPGPT-APPAPGPTAPPAFASLFPPG 33
P+GAPGPT A PAP A P SL PPG
Sbjct: 12 PAGAPGPTAAAPAPPAAATPFKVSLQPPG 40
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 34.7 bits (78), Expect = 0.20
Identities = 13/18 (72%), Positives = 13/18 (72%)
Query: 6 PSGAPGPTAPPAPGPTAP 23
P G PGP APPAP P AP
Sbjct: 720 PPGPPGPAAPPAPSPAAP 737
>gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens]
Length = 1796
Score = 34.7 bits (78), Expect = 0.20
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 6 PSGAPGPTAPP----APGPTAPPAFASLFPPGLHAIYGECRRLYPDQP 49
P G+PGP PP PGP P P + YG R +PDQP
Sbjct: 1731 PPGSPGPRGPPGHLGVPGPQGPSGQPGYCDPSSCSAYG-VRAPHPDQP 1777
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 34.3 bits (77), Expect = 0.26
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 3 ELRPSGAPGPTAPP------APGPTAPPAF-ASLFPPGLHAIYGE 40
++ P+G PGP PP GP PP + PGLH I GE
Sbjct: 800 DVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGE 844
Score = 30.0 bits (66), Expect = 4.9
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 8 GAPGPTAPPA-PGPTAPPAFASLFPPGLHAIYG-------ECRRLYPDQPNP 51
G GP PP PGP P FA PPG + G + R +P P P
Sbjct: 734 GLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGP 785
Score = 29.6 bits (65), Expect = 6.4
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
Query: 6 PSGAPGPTAPPA-PGPTAPPAFASLFPPGL 34
P+G PGP PP PG PP PPGL
Sbjct: 187 PTGIPGPIGPPGPPGLMGPPG-----PPGL 211
Score = 29.3 bits (64), Expect = 8.4
Identities = 37/120 (30%), Positives = 41/120 (34%), Gaps = 34/120 (28%)
Query: 6 PSGAPGPTAPPA----------PGPTAPPAFASLFPPGLHAIYGECRRLYPDQPNPLQVT 55
P G PGP PP PGP PP PG I GE + P QP L
Sbjct: 1250 PKGNPGPQGPPGRPGPTGFQGLPGPEGPPGL-----PGNGGIKGE--KGNPGQPG-LPGL 1301
Query: 56 AIVKYWLGGPDPLDYVSMYRNVGSPSANIPEHWHYISFGLSDLYGDNRVHEFTGTDGPSG 115
+K G P + N G P N G+ G V F G GPSG
Sbjct: 1302 PGLKGDQGPP------GLQGNPGRPGLN----------GMKGDPGLPGVPGFPGMKGPSG 1345
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 34.3 bits (77), Expect = 0.26
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 3 ELRPSGAPGPTAPP------APGPTAPPAF-ASLFPPGLHAIYGE 40
++ P+G PGP PP GP PP + PGLH I GE
Sbjct: 800 DVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGE 844
Score = 31.6 bits (70), Expect = 1.7
Identities = 37/114 (32%), Positives = 41/114 (35%), Gaps = 28/114 (24%)
Query: 6 PSGAPGPTAPPA----PGPTAPPAFASLFPPGLHAIYGECRRLYPDQPNPLQVTAIVKYW 61
P G PGP PP PGP PP PG I GE + P QP L +K
Sbjct: 1250 PKGNPGPQGPPGRPGLPGPEGPPGL-----PGNGGIKGE--KGNPGQPG-LPGLPGLKGD 1301
Query: 62 LGGPDPLDYVSMYRNVGSPSANIPEHWHYISFGLSDLYGDNRVHEFTGTDGPSG 115
G P + N G P N G+ G V F G GPSG
Sbjct: 1302 QGPP------GLQGNPGRPGLN----------GMKGDPGLPGVPGFPGMKGPSG 1339
Score = 30.0 bits (66), Expect = 4.9
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 8 GAPGPTAPPA-PGPTAPPAFASLFPPGLHAIYG-------ECRRLYPDQPNP 51
G GP PP PGP P FA PPG + G + R +P P P
Sbjct: 734 GLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGP 785
Score = 29.6 bits (65), Expect = 6.4
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
Query: 6 PSGAPGPTAPPA-PGPTAPPAFASLFPPGL 34
P+G PGP PP PG PP PPGL
Sbjct: 187 PTGIPGPIGPPGPPGLMGPPG-----PPGL 211
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 34.3 bits (77), Expect = 0.26
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 3 ELRPSGAPGPTAPP------APGPTAPPAF-ASLFPPGLHAIYGE 40
++ P+G PGP PP GP PP + PGLH I GE
Sbjct: 800 DVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGE 844
Score = 30.4 bits (67), Expect = 3.8
Identities = 37/117 (31%), Positives = 41/117 (35%), Gaps = 31/117 (26%)
Query: 6 PSGAPGPTAPPA-------PGPTAPPAFASLFPPGLHAIYGECRRLYPDQPNPLQVTAIV 58
P G PGP PP PGP PP PG I GE + P QP L +
Sbjct: 1250 PKGNPGPQGPPGRPGFQGLPGPEGPPGL-----PGNGGIKGE--KGNPGQPG-LPGLPGL 1301
Query: 59 KYWLGGPDPLDYVSMYRNVGSPSANIPEHWHYISFGLSDLYGDNRVHEFTGTDGPSG 115
K G P + N G P N G+ G V F G GPSG
Sbjct: 1302 KGDQGPP------GLQGNPGRPGLN----------GMKGDPGLPGVPGFPGMKGPSG 1342
Score = 30.0 bits (66), Expect = 4.9
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 8 GAPGPTAPPA-PGPTAPPAFASLFPPGLHAIYG-------ECRRLYPDQPNP 51
G GP PP PGP P FA PPG + G + R +P P P
Sbjct: 734 GLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGP 785
Score = 29.6 bits (65), Expect = 6.4
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
Query: 6 PSGAPGPTAPPA-PGPTAPPAFASLFPPGL 34
P+G PGP PP PG PP PPGL
Sbjct: 187 PTGIPGPIGPPGPPGLMGPPG-----PPGL 211
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 34.3 bits (77), Expect = 0.26
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 6 PSGAPGPTAPPAPGPTAPPAFASLFPPG 33
P G PGP+ P PGP PP PPG
Sbjct: 864 PRGPPGPSIPGPPGPRGPPGEGLPGPPG 891
>gi|116805334 Ras-induced senescence 1 [Homo sapiens]
Length = 300
Score = 34.3 bits (77), Expect = 0.26
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 4 LRPSGAPGPTAPPAPGPTAPPAFASLFPPGLHAIYGE 40
LRP+ AP A A PTA PA+ + PPG + GE
Sbjct: 157 LRPAAAPSAAAATAGAPTALPAYPAAEPPGPLWLQGE 193
>gi|18641360 collectin sub-family member 12 [Homo sapiens]
Length = 742
Score = 33.9 bits (76), Expect = 0.34
Identities = 21/50 (42%), Positives = 21/50 (42%), Gaps = 14/50 (28%)
Query: 6 PSGAPGPTAPPA----PGPTAPPAFASLFPPGLHAIYGECRRLYPDQPNP 51
PSG PGP PP PGP PP F GL GE P P P
Sbjct: 522 PSGDPGPPGPPGKEGLPGPQGPPGF-----QGLQGTVGE-----PGVPGP 561
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 33.1 bits (74), Expect = 0.58
Identities = 15/29 (51%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 4 LRPSGAPGPTAPPAPGPTAPPAFASLFPP 32
L P G PGP PP PG PP A PP
Sbjct: 241 LGPPGPPGPPGPPPPGQVLPPPLAG--PP 267
>gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo
sapiens]
Length = 288
Score = 33.1 bits (74), Expect = 0.58
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 5 RPSGAPGPTAPPAPGPTAPPAFASLFPPGLHAIYGECRRLYPDQPNPLQVTAIVKYWLGG 64
RP+ AP PPA GP A A A++ P P P V A V+ G
Sbjct: 97 RPAAAPAAVRPPAAGPPA-AAPAAVCPAAADPSAASLCAASPPAAVPAAVPAAVRPPAAG 155
Query: 65 PDPLDYVSMYRNVGSPSA 82
P ++Y PSA
Sbjct: 156 PPAAALAAVYPAAADPSA 173
>gi|39995107 Fas-activated serine/threonine kinase isoform 4 [Homo
sapiens]
Length = 408
Score = 33.1 bits (74), Expect = 0.58
Identities = 25/54 (46%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 5 RPSGAPGPTAP-PAPGPTAPPAFASLFP---PGLHAIYGECR-RLYPDQPNPLQ 53
RP G PGP AP P G T S FP P + A+ E R RL P P PLQ
Sbjct: 3 RPRGEPGPRAPRPTEGATCAGPGESCFPSDGPLVCALEQERRLRLPPKPPPPLQ 56
>gi|118498339 EMI domain containing 2 [Homo sapiens]
Length = 439
Score = 33.1 bits (74), Expect = 0.58
Identities = 22/62 (35%), Positives = 24/62 (38%), Gaps = 20/62 (32%)
Query: 6 PSGAPGPTAPPAP----------------GPTAPPAFASLFPPGLHAIYGECRRLYPDQP 49
P+G PG T PP P GP PP L PPG + GE R P P
Sbjct: 198 PAGPPGQTGPPGPAGPPGSKGDRGQTGEKGPAGPPGL--LGPPGPRGLPGEMGR--PGPP 253
Query: 50 NP 51
P
Sbjct: 254 GP 255
Score = 31.6 bits (70), Expect = 1.7
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 6 PSGAPGPTAPPAP-GPTAPPAFASLFPPGLHAIYGE 40
P G PGP PP P GP PP PG + GE
Sbjct: 304 PRGPPGPPGPPGPRGPPGPPG-----TPGSQGLAGE 334
Score = 30.0 bits (66), Expect = 4.9
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 6 PSGAPGPTAPPAPGPTAPP-AFASLFPP 32
P G PGP P P P +P A SL PP
Sbjct: 252 PPGPPGPAGNPGPSPNSPQGALYSLQPP 279
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 32.7 bits (73), Expect = 0.76
Identities = 22/52 (42%), Positives = 22/52 (42%), Gaps = 12/52 (23%)
Query: 6 PSGAPGPTAPPA------PGPTAPPAFASLFPPGLHAIYGECRRLYPDQPNP 51
P GAPG PP PGP PP PPG AI G L P P P
Sbjct: 1077 PPGAPGLPGPPGFGRPGDPGPPGPPG-----PPGPPAILGAAVAL-PGPPGP 1122
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 32.3 bits (72), Expect = 0.99
Identities = 29/85 (34%), Positives = 31/85 (36%), Gaps = 15/85 (17%)
Query: 3 ELRPSGAPGPTAPPAPGPTAPPAFASLFPPGLHAIYGECRRLYPDQPN--PLQVTAIVKY 60
E R S A GP APPA GP PP PPG P P P V A
Sbjct: 153 ERRVSNAGGPPAPPAGGPPPPPGPPP--PPG-----------PPPPPGLPPSGVPAAAHG 199
Query: 61 WLGGPDPLDYVSMYRNVGSPSANIP 85
GGP P + + G A P
Sbjct: 200 AGGGPPPAPPLPAAQGPGGGGAGAP 224
>gi|17158023 hypothetical protein LOC85395 [Homo sapiens]
Length = 230
Score = 32.3 bits (72), Expect = 0.99
Identities = 18/29 (62%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 2 AELRPSG--APGPTAPPAPGPTAPPAFAS 28
A +RP G APGP APPAP T PPA A+
Sbjct: 14 AAVRPKGEAAPGP-APPAPEATPPPASAA 41
>gi|169214023 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 32.0 bits (71), Expect = 1.3
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 5 RPSGAPGPTAPPAPGPTAPPAFASLFPPGLHA 36
RP+ PGP P P P APP+ A+ PP H+
Sbjct: 44 RPAHRPGPALRPRPQPKAPPSSAA--PPTPHS 73
>gi|169214468 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 32.0 bits (71), Expect = 1.3
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 5 RPSGAPGPTAPPAPGPTAPPAFASLFPPGLHA 36
RP+ PGP P P P APP+ A+ PP H+
Sbjct: 44 RPAHRPGPALRPRPQPKAPPSSAA--PPTPHS 73
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 32.0 bits (71), Expect = 1.3
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 14/65 (21%)
Query: 6 PSGAPGPTAPPAPGPTAPPAFASLFPPGLHAIYGECRR--------------LYPDQPNP 51
P P P PP P PPA + P G++ ++ E R + ++P P
Sbjct: 328 PRPCPSPLPPPPAPPKGPPAPPAATPAGVYTVFREQGREHRVVAPTFVPSVEAFDERPGP 387
Query: 52 LQVTA 56
+Q+ +
Sbjct: 388 IQIAS 392
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 31.6 bits (70), Expect = 1.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 6 PSGAPGPTAPPAPGPTAPPAFASLFP 31
P+GAPGP P+ P PPA A+ P
Sbjct: 180 PAGAPGPLPAPSQTPPGPPAAAACDP 205
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 31.6 bits (70), Expect = 1.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 6 PSGAPGPTAPPAPGPTAPPAFASLFP 31
P+GAPGP P+ P PPA A+ P
Sbjct: 180 PAGAPGPLPAPSQTPPGPPAAAACDP 205
>gi|115387123 protocadherin 15 isoform CD1-4 precursor [Homo sapiens]
Length = 1955
Score = 31.6 bits (70), Expect = 1.7
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 4 LRPSGAPGPTAPPAPGPTAPPAFASLFPP 32
+ PS P P PP P+ PPA A L PP
Sbjct: 1740 ISPSACPLPPPPPISPPSPPPAPAPLAPP 1768
>gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sapiens]
Length = 1932
Score = 31.6 bits (70), Expect = 1.7
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 4 LRPSGAPGPTAPPAPGPTAPPAFASLFPP 32
+ PS P P PP P+ PPA A L PP
Sbjct: 1717 ISPSACPLPPPPPISPPSPPPAPAPLAPP 1745
>gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapiens]
Length = 1935
Score = 31.6 bits (70), Expect = 1.7
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 4 LRPSGAPGPTAPPAPGPTAPPAFASLFPP 32
+ PS P P PP P+ PPA A L PP
Sbjct: 1720 ISPSACPLPPPPPISPPSPPPAPAPLAPP 1748
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.137 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,702,527
Number of Sequences: 37866
Number of extensions: 1221516
Number of successful extensions: 10088
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 116
Number of HSP's that attempted gapping in prelim test: 9078
Number of HSP's gapped (non-prelim): 1041
length of query: 484
length of database: 18,247,518
effective HSP length: 106
effective length of query: 378
effective length of database: 14,233,722
effective search space: 5380346916
effective search space used: 5380346916
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.