Guide to the Human Genome
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Name: TBX21 Sequence: fasta or formatted (535aa) NCBI GI: 7019549
Description:

T-box 21

Referenced in:

T Box Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         45           2
 C cysteine            0.7          4           1
 D aspartate           4.3         23           1
 E glutamate           6.0         32           1
 F phenylalanine       4.5         24           1
 G glycine            10.8         58           3
 H histidine           2.4         13           2
 I isoleucine          2.2         12           2
 K lysine              3.0         16           1
 L leucine             5.8         31           2
 M methionine          2.8         15           1
 N asparagine          3.7         20           2
 P proline            13.1         70           3
 Q glutamine           4.9         26           1
 R arginine            5.2         28           3
 S serine              7.3         39           3
 T threonine           3.6         19           1
 V valine              4.9         26           2
 W tryptophan          1.5          8           1
 Y tyrosine            4.9         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   T-box 21 
EOMES                 0.284   eomesodermin 
TBR1                  0.272   T-box, brain, 1 
TBX4                  0.165   T-box 4 
TBX5                  0.157   T-box 5 isoform 3 
TBX5                  0.157   T-box 5 isoform 1 
TBX5                  0.157   T-box 5 isoform 1 
TBX5                  0.156   T-box 5 isoform 2 
TBX1                  0.155   T-box 1 isoform B 
TBX1                  0.155   T-box 1 isoform C 
TBX1                  0.155   T-box 1 isoform A 
TBX6                  0.155   T-box 6 
TBX2                  0.147   T-box 2 
MGA                   0.147   MAX gene associated 
TBX19                 0.146   T-box 19 
T                     0.143   transcription factor T 
TBX3                  0.142   T-box 3 protein isoform 1 
TBX10                 0.142   T-box 10 
TBX18                 0.138   T-box 18 
TBX3                  0.137   T-box 3 protein isoform 2 
TBX20                 0.131   T-box transcription factor TBX20 
TBX22                 0.129   T-box 22 isoform 1 
TBX22                 0.129   T-box 22 isoform 1 
TBX15                 0.128   T-box 15 
TBX22                 0.104   T-box 22 isoform 2 
PEF1                  0.022   penta-EF-hand domain containing 1 
PRB4                  0.019   proline-rich protein BstNI subfamily 4 precursor [Ho...
PRB3                  0.018   proline-rich protein BstNI subfamily 3 precursor [H...
WASF2                 0.017   WAS protein family, member 2 
TNRC18                0.016   trinucleotide repeat containing 18 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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