Guide to the Human Genome
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Name: C21orf70 Sequence: fasta or formatted (230aa) NCBI GI: 17158023
Description:

hypothetical protein LOC85395

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.5         31           2
 C cysteine            0.0          0           0
 D aspartate           2.6          6           1
 E glutamate           8.7         20           3
 F phenylalanine       1.3          3           1
 G glycine             6.1         14           2
 H histidine           1.3          3           1
 I isoleucine          3.0          7           1
 K lysine              6.1         14           2
 L leucine            10.0         23           2
 M methionine          1.7          4           1
 N asparagine          1.3          3           1
 P proline             7.8         18           3
 Q glutamine           6.1         14           2
 R arginine           13.0         30           4
 S serine              7.0         16           2
 T threonine           3.5          8           1
 V valine              5.7         13           3
 W tryptophan          0.9          2           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC85395 
LOC729535             0.681   PREDICTED: hypothetical protein 
LOC729535             0.681   PREDICTED: hypothetical protein 
LOC729535             0.681   PREDICTED: hypothetical protein 
LOC729774             0.636   PREDICTED: hypothetical protein, partial 
LOC729774             0.636   PREDICTED: hypothetical protein 
LOC729774             0.631   PREDICTED: hypothetical protein 
MAP7                  0.040   microtubule-associated protein 7 
MAP7D1                0.033   MAP7 domain containing 1 
TCHH                  0.031   trichohyalin 
CEP170                0.029   centrosomal protein 170kDa isoform beta 
CEP170                0.029   centrosomal protein 170kDa isoform alpha 
CEP170                0.029   centrosomal protein 170kDa isoform gamma 
LOC100130174          0.024   PREDICTED: hypothetical protein 
LOC100130174          0.024   PREDICTED: hypothetical protein 
LOC100130174          0.024   PREDICTED: hypothetical protein 
CIC                   0.024   capicua homolog 
INCENP                0.024   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.024   inner centromere protein antigens 135/155kDa isofor...
MAP3K1                0.024   mitogen-activated protein kinase kinase kinase 1 [H...
LOC100291129          0.024   PREDICTED: hypothetical protein XP_002347815 
LOC100288194          0.024   PREDICTED: hypothetical protein XP_002343605 
LOC100294343          0.024   PREDICTED: hypothetical protein XP_002344111 
CALD1                 0.024   caldesmon 1 isoform 1 
MYH7B                 0.024   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
MICALCL               0.021   MICAL C-terminal like 
ITSN2                 0.021   intersectin 2 isoform 3 
ITSN2                 0.021   intersectin 2 isoform 1 
ITSN2                 0.021   intersectin 2 isoform 2 
KIF2A                 0.021   kinesin heavy chain member 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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