Guide to the Human Genome
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Name: LOC100290674 Sequence: fasta or formatted (265aa) NCBI GI: 239750906
Description:

PREDICTED: hypothetical protein XP_002347612

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         21           2
 C cysteine            3.0          8           1
 D aspartate           3.8         10           2
 E glutamate           6.0         16           2
 F phenylalanine       1.5          4           1
 G glycine             8.7         23           2
 H histidine           5.3         14           2
 I isoleucine          6.4         17           1
 K lysine              2.6          7           1
 L leucine            10.9         29           2
 M methionine          2.3          6           2
 N asparagine          4.2         11           1
 P proline             3.8         10           1
 Q glutamine           6.0         16           1
 R arginine            4.9         13           2
 S serine              5.3         14           2
 T threonine           6.0         16           2
 V valine              7.2         19           3
 W tryptophan          2.6          7           2
 Y tyrosine            1.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347612 
LOC100291760          1.000   PREDICTED: hypothetical protein XP_002344912 
LOC100288732          1.000   PREDICTED: hypothetical protein XP_002343433 
SUFU                  0.023   suppressor of fused 
MYOZ2                 0.006   myozenin 2 
RGL1                  0.006   ral guanine nucleotide dissociation stimulator-like ...
GALNTL2               0.006   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ac...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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