Guide to the Human Genome
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Name: C6orf25 Sequence: fasta or formatted (222aa) NCBI GI: 19913385
Description:

G6B protein isoform G6b-G precursor

Referenced in:

Protein Tyrosine Phosphatases

Other entries for this name:
alt prot [237aa] G6B protein isoform G6b-A precursor
alt prot [241aa] G6B protein isoform G6b-B precursor
alt prot [217aa] G6B protein isoform G6b-C precursor
alt prot [193aa] G6B protein isoform G6b-D precursor
alt prot [197aa] G6B protein isoform G6b-E precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         14           1
 C cysteine            2.3          5           1
 D aspartate           3.2          7           1
 E glutamate           2.3          5           1
 F phenylalanine       2.7          6           2
 G glycine            14.4         32           2
 H histidine           2.7          6           1
 I isoleucine          2.3          5           1
 K lysine              2.7          6           1
 L leucine            14.4         32           3
 M methionine          1.4          3           1
 N asparagine          1.4          3           1
 P proline            11.3         25           2
 Q glutamine           2.7          6           1
 R arginine            9.5         21           2
 S serine              9.0         20           3
 T threonine           3.6          8           1
 V valine              5.0         11           1
 W tryptophan          2.3          5           2
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   G6B protein isoform G6b-G precursor 
C6orf25               0.955   G6B protein isoform G6b-A precursor 
C6orf25               0.803   G6B protein isoform G6b-B precursor 
C6orf25               0.698   G6B protein isoform G6b-D precursor 
C6orf25               0.596   G6B protein isoform G6b-C precursor 
C6orf25               0.592   G6B protein isoform G6b-E precursor 
LOC100289962          0.016   PREDICTED: hypothetical protein XP_002348169 
LOC100289014          0.016   PREDICTED: hypothetical protein XP_002343836 
SIPA1L3               0.016   signal-induced proliferation-associated 1 like 3 [Ho...
RNF43                 0.014   ring finger protein 43 
PTPN5                 0.014   protein-tyrosine-phosphatase non-receptor 5 isoform ...
PTPN5                 0.014   protein-tyrosine-phosphatase non-receptor 5 isoform ...
PTPN5                 0.014   protein-tyrosine-phosphatase non-receptor 5 isoform ...
LOC100293769          0.014   PREDICTED: hypothetical protein 
LOC100291339          0.014   PREDICTED: hypothetical protein XP_002347364 
LOC100287626          0.014   PREDICTED: hypothetical protein XP_002343250 
EP300                 0.011   E1A binding protein p300 
LOC100292292          0.011   PREDICTED: hypothetical protein 
UBQLN4                0.011   ataxin-1 ubiquitin-like interacting protein 
BRWD3                 0.011   bromodomain and WD repeat domain containing 3 [Homo...
PRG4                  0.011   proteoglycan 4 isoform D 
PRG4                  0.011   proteoglycan 4 isoform C 
PRG4                  0.011   proteoglycan 4 isoform B 
PRG4                  0.011   proteoglycan 4 isoform A 
LOC100130506          0.011   PREDICTED: hypothetical protein 
LOC100288911          0.011   PREDICTED: hypothetical protein XP_002342241 
TAF4                  0.011   TBP-associated factor 4 
TNXB                  0.011   tenascin XB isoform 1 precursor 
NCAN                  0.011   chondroitin sulfate proteoglycan 3 
FIZ1                  0.011   FLT3-interacting zinc finger 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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