Guide to the Human Genome
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Name: C6orf25 Sequence: fasta or formatted (241aa) NCBI GI: 19913375
Description:

G6B protein isoform G6b-B precursor

Referenced in:

Protein Tyrosine Phosphatases

Other entries for this name:
alt prot [237aa] G6B protein isoform G6b-A precursor
alt prot [217aa] G6B protein isoform G6b-C precursor
alt prot [193aa] G6B protein isoform G6b-D precursor
alt prot [197aa] G6B protein isoform G6b-E precursor
alt prot [222aa] G6B protein isoform G6b-G precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         17           1
 C cysteine            1.7          4           1
 D aspartate           5.0         12           1
 E glutamate           3.3          8           3
 F phenylalanine       2.5          6           2
 G glycine             9.5         23           2
 H histidine           2.5          6           1
 I isoleucine          2.9          7           1
 K lysine              2.9          7           1
 L leucine            16.2         39           3
 M methionine          0.4          1           1
 N asparagine          0.8          2           1
 P proline            11.6         28           2
 Q glutamine           2.9          7           1
 R arginine            8.7         21           2
 S serine              7.9         19           3
 T threonine           3.7          9           1
 V valine              6.6         16           3
 W tryptophan          2.1          5           2
 Y tyrosine            1.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   G6B protein isoform G6b-B precursor 
C6orf25               0.775   G6B protein isoform G6b-C precursor 
C6orf25               0.762   G6B protein isoform G6b-E precursor 
C6orf25               0.752   G6B protein isoform G6b-G precursor 
C6orf25               0.752   G6B protein isoform G6b-A precursor 
C6orf25               0.554   G6B protein isoform G6b-D precursor 
TNXB                  0.021   tenascin XB isoform 1 precursor 
SRCAP                 0.021   Snf2-related CBP activator protein 
EPB41L1               0.017   erythrocyte membrane protein band 4.1-like 1 isoform...
EPB41L1               0.017   erythrocyte membrane protein band 4.1-like 1 isoform...
PPP1R13L              0.017   protein phosphatase 1, regulatory subunit 13 like [...
PPP1R13L              0.017   protein phosphatase 1, regulatory subunit 13 like [H...
RPH3A                 0.015   rabphilin 3A homolog isoform 1 
RPH3A                 0.015   rabphilin 3A homolog isoform 2 
SIPA1L3               0.015   signal-induced proliferation-associated 1 like 3 [Ho...
FAM22E                0.013   PREDICTED: hypothetical protein isoform 1 
FAM22E                0.013   PREDICTED: hypothetical protein 
GPHN                  0.013   gephyrin isoform 2 
VPS37C                0.013   vacuolar protein sorting 37C 
PTPN5                 0.013   protein-tyrosine-phosphatase non-receptor 5 isoform ...
PTPN5                 0.013   protein-tyrosine-phosphatase non-receptor 5 isoform ...
PTPN5                 0.013   protein-tyrosine-phosphatase non-receptor 5 isoform ...
RNF43                 0.013   ring finger protein 43 
GPHN                  0.013   gephyrin isoform 1 
LOC729537             0.011   PREDICTED: hypothetical protein 
FAM22F                0.011   hypothetical protein LOC54754 
CXorf66               0.011   hypothetical protein LOC347487 
NCAN                  0.011   chondroitin sulfate proteoglycan 3 
LOC285141             0.011   PREDICTED: hypothetical protein LOC285141 
LOC285141             0.011   PREDICTED: hypothetical protein LOC285141 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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