Guide to the Human Genome
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Name: LOC100293769 Sequence: fasta or formatted (102aa) NCBI GI: 239755924
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.7         14           2
 C cysteine            0.0          0           0
 D aspartate           2.9          3           1
 E glutamate           2.9          3           1
 F phenylalanine       0.0          0           0
 G glycine             8.8          9           2
 H histidine           0.0          0           0
 I isoleucine          1.0          1           1
 K lysine              0.0          0           0
 L leucine            10.8         11           1
 M methionine          2.0          2           1
 N asparagine          1.0          1           1
 P proline            18.6         19           3
 Q glutamine           2.9          3           1
 R arginine           15.7         16           2
 S serine             10.8         11           2
 T threonine           5.9          6           2
 V valine              2.9          3           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291339          1.000   PREDICTED: hypothetical protein XP_002347364 
LOC100287626          1.000   PREDICTED: hypothetical protein XP_002343250 
SRRM1                 0.072   serine/arginine repetitive matrix 1 
LOC100127891          0.067   PREDICTED: similar to hCG2042508 
LOC100127891          0.067   PREDICTED: similar to hCG2042508 
LOC100127891          0.067   PREDICTED: similar to hCG2042508 
LOC100293495          0.067   PREDICTED: hypothetical protein 
TTBK1                 0.067   tau tubulin kinase 1 
PLEKHH3               0.061   pleckstrin homology domain containing, family H (wit...
LOC100292801          0.056   PREDICTED: hypothetical protein 
LOC100293604          0.056   PREDICTED: hypothetical protein 
LOC100290691          0.056   PREDICTED: hypothetical protein XP_002347934 
LOC100131102          0.056   PREDICTED: hypothetical protein 
LOC100288156          0.056   PREDICTED: hypothetical protein XP_002344202 
LOC100287837          0.056   PREDICTED: hypothetical protein XP_002343157 
LOC100131102          0.056   PREDICTED: hypothetical protein 
CABP1                 0.056   calcium binding protein 1 isoform 3 
COL27A1               0.056   collagen, type XXVII, alpha 1 
WDR81                 0.056   PREDICTED: WD repeat domain 81 
SHROOM4               0.056   shroom family member 4 
LOC100291797          0.056   PREDICTED: hypothetical protein XP_002345651 
LOC100131455          0.056   PREDICTED: hypothetical protein 
LOC100291443          0.056   PREDICTED: hypothetical protein XP_002346504 
LOC100131455          0.056   PREDICTED: hypothetical protein 
LOC100290551          0.056   PREDICTED: hypothetical protein XP_002346417 
LOC100287983          0.056   PREDICTED: hypothetical protein XP_002343396 
LOC100289394          0.056   PREDICTED: hypothetical protein XP_002342316 
LOC100131455          0.056   PREDICTED: hypothetical protein 
LOC100287437          0.056   PREDICTED: hypothetical protein XP_002342117 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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