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Search of human proteins with 19913379
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19913379 G6B protein isoform G6b-D precursor [Homo sapiens]
(193 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19913379 G6B protein isoform G6b-D precursor [Homo sapiens] 407 e-114
gi|19913373 G6B protein isoform G6b-A precursor [Homo sapiens] 386 e-108
gi|19913385 G6B protein isoform G6b-G precursor [Homo sapiens] 333 4e-92
gi|19913377 G6B protein isoform G6b-C precursor [Homo sapiens] 288 3e-78
gi|19913381 G6B protein isoform G6b-E precursor [Homo sapiens] 287 3e-78
gi|19913375 G6B protein isoform G6b-B precursor [Homo sapiens] 286 1e-77
gi|239752133 PREDICTED: hypothetical protein [Homo sapiens] 37 0.010
gi|239746658 PREDICTED: hypothetical protein [Homo sapiens] 37 0.010
gi|239754138 PREDICTED: hypothetical protein [Homo sapiens] 35 0.030
gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo ... 35 0.030
gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo sa... 35 0.040
gi|38683860 insulin receptor substrate 2 [Homo sapiens] 35 0.040
gi|32698984 outer dense fiber of sperm tails 3-like 2 [Homo sapi... 33 0.12
gi|15029506 homeobox D8 [Homo sapiens] 33 0.12
gi|239753856 PREDICTED: hypothetical protein [Homo sapiens] 33 0.12
gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo ... 33 0.12
gi|239748415 PREDICTED: hypothetical protein [Homo sapiens] 33 0.12
gi|239745372 PREDICTED: hypothetical protein XP_002343483 [Homo ... 33 0.12
gi|239742343 PREDICTED: hypothetical protein XP_002342497 [Homo ... 33 0.12
gi|56711322 ring finger protein 43 [Homo sapiens] 33 0.12
gi|38327539 inositol polyphosphate-5-phosphatase E [Homo sapiens] 33 0.12
gi|51093874 proline rich 19 [Homo sapiens] 33 0.12
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 33 0.15
gi|18959210 WIRE protein [Homo sapiens] 33 0.15
gi|239749217 PREDICTED: similar to Mucin-12, partial [Homo sapiens] 33 0.20
gi|5454106 TBP-related factor 10 [Homo sapiens] 33 0.20
gi|59853099 dynamin 1 isoform 1 [Homo sapiens] 33 0.20
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 33 0.20
gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens] 32 0.26
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 32 0.26
>gi|19913379 G6B protein isoform G6b-D precursor [Homo sapiens]
Length = 193
Score = 407 bits (1047), Expect = e-114
Identities = 193/193 (100%), Positives = 193/193 (100%)
Query: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
Sbjct: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
Query: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
Sbjct: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
Query: 121 HVLGDRTYCKAPGPTHALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSS 180
HVLGDRTYCKAPGPTHALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSS
Sbjct: 121 HVLGDRTYCKAPGPTHALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSS 180
Query: 181 PQQAPPAVHSGPC 193
PQQAPPAVHSGPC
Sbjct: 181 PQQAPPAVHSGPC 193
>gi|19913373 G6B protein isoform G6b-A precursor [Homo sapiens]
Length = 237
Score = 386 bits (992), Expect = e-108
Identities = 193/237 (81%), Positives = 193/237 (81%), Gaps = 44/237 (18%)
Query: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
Sbjct: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
Query: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
Sbjct: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
Query: 121 HVLGDRTYCKAPGPTH-------------------------------------------- 136
HVLGDRTYCKAPGPTH
Sbjct: 121 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF 180
Query: 137 ALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAPPAVHSGPC 193
ALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAPPAVHSGPC
Sbjct: 181 ALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAPPAVHSGPC 237
>gi|19913385 G6B protein isoform G6b-G precursor [Homo sapiens]
Length = 222
Score = 333 bits (855), Expect = 4e-92
Identities = 169/213 (79%), Positives = 169/213 (79%), Gaps = 44/213 (20%)
Query: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
Sbjct: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
Query: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
Sbjct: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
Query: 121 HVLGDRTYCKAPGPTH-------------------------------------------- 136
HVLGDRTYCKAPGPTH
Sbjct: 121 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF 180
Query: 137 ALSPPHSSTCENRAPEASKGGRAQDSRGPGPGT 169
ALSPPHSSTCENRAPEASKGGRAQDSRGPGPGT
Sbjct: 181 ALSPPHSSTCENRAPEASKGGRAQDSRGPGPGT 213
>gi|19913377 G6B protein isoform G6b-C precursor [Homo sapiens]
Length = 217
Score = 288 bits (736), Expect = 3e-78
Identities = 137/140 (97%), Positives = 137/140 (97%)
Query: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
Sbjct: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
Query: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
Sbjct: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
Query: 121 HVLGDRTYCKAPGPTHALSP 140
HVLGDRTYCKAPGPTH P
Sbjct: 121 HVLGDRTYCKAPGPTHGACP 140
>gi|19913381 G6B protein isoform G6b-E precursor [Homo sapiens]
Length = 197
Score = 287 bits (735), Expect = 3e-78
Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
Sbjct: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
Query: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
Sbjct: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
Query: 121 HVLGDRTYCKAPGPTHA 137
HVLGDRTYCKAPGPTHA
Sbjct: 121 HVLGDRTYCKAPGPTHA 137
>gi|19913375 G6B protein isoform G6b-B precursor [Homo sapiens]
Length = 241
Score = 286 bits (731), Expect = 1e-77
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
Sbjct: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
Query: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
Sbjct: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
Query: 121 HVLGDRTYCKAPGPTH 136
HVLGDRTYCKAPGPTH
Sbjct: 121 HVLGDRTYCKAPGPTH 136
>gi|239752133 PREDICTED: hypothetical protein [Homo sapiens]
Length = 224
Score = 37.0 bits (84), Expect = 0.010
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Query: 127 TYCKAPGPTHALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAPP 186
T+ APGP H +PP C A G A+ SRG G+G PQ+ PP
Sbjct: 135 TFLSAPGPQHPPTPP---ACSGAATRREPPGNARQSRG---------VGAGKPEPQRRPP 182
>gi|239746658 PREDICTED: hypothetical protein [Homo sapiens]
Length = 411
Score = 37.0 bits (84), Expect = 0.010
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Query: 127 TYCKAPGPTHALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAPP 186
T+ APGP H +PP C A G A+ SRG G+G PQ+ PP
Sbjct: 322 TFLSAPGPQHPPTPP---ACSGAATRREPPGNARQSRG---------VGAGKPEPQRRPP 369
>gi|239754138 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 35.4 bits (80), Expect = 0.030
Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 14/77 (18%)
Query: 121 HVLGDRTYCKAPGPTHALSPPHSSTCENRAPEASK----------GGRAQDSRGPGPGTE 170
HVLG R A GPTH LS HS +R P +K G R + + P
Sbjct: 81 HVLGARV---AAGPTHRLSASHSRV-SSRGPVGTKPKRPGQGRRAGARMRSAAPASPRAR 136
Query: 171 PALCGSGPSSPQQAPPA 187
A S SSP PP+
Sbjct: 137 AARAISNQSSPPPPPPS 153
>gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo
sapiens]
Length = 274
Score = 35.4 bits (80), Expect = 0.030
Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 14/77 (18%)
Query: 121 HVLGDRTYCKAPGPTHALSPPHSSTCENRAPEASK----------GGRAQDSRGPGPGTE 170
HVLG R A GPTH LS HS +R P +K G R + + P
Sbjct: 81 HVLGARV---AAGPTHRLSASHSRV-SSRGPVGTKPKRPGQGRRAGARMRSAAPASPRAR 136
Query: 171 PALCGSGPSSPQQAPPA 187
A S SSP PP+
Sbjct: 137 AARAISNQSSPPPPPPS 153
>gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo
sapiens]
Length = 756
Score = 35.0 bits (79), Expect = 0.040
Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 12/69 (17%)
Query: 131 APGPTHAL-------SPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQ 183
APGP P S + AP A+ G A+ S GP PG E GP P
Sbjct: 33 APGPAELRLGAPVGGPDPQSPGLDEPAPGAAADGGARWSAGPAPGLE-----GGPRDPGP 87
Query: 184 APPAVHSGP 192
+ P SGP
Sbjct: 88 SAPPPRSGP 96
>gi|38683860 insulin receptor substrate 2 [Homo sapiens]
Length = 1338
Score = 35.0 bits (79), Expect = 0.040
Identities = 33/142 (23%), Positives = 48/142 (33%), Gaps = 21/142 (14%)
Query: 66 ASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVLHVLGD 125
A++ P P +P R+ S SG++RL L+ F + D R + D
Sbjct: 1080 AATPPQPIAAPPKPEAARVASPTSGVKRLSLMEQVSGVEAFLQASQPPDPHRGAKVIRAD 1139
Query: 126 ---------------RTYCKAPGPTHALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTE 170
T P+ A +P ++ K GPG G E
Sbjct: 1140 PQGGRRRHSSETFSSTTTVTPVSPSFAHNPKRHNSASVENVSLRKSSEGGVGVGPGGGDE 1199
Query: 171 PALCGSGPSSPQQAPPAVHSGP 192
P P+SP+Q PA P
Sbjct: 1200 P------PTSPRQLQPAPPLAP 1215
>gi|32698984 outer dense fiber of sperm tails 3-like 2 [Homo
sapiens]
Length = 289
Score = 33.5 bits (75), Expect = 0.12
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 131 APGPTHALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAPPAVHS 190
+PGP + L P + + P S GRA+ SRGP G G SP++ PP H
Sbjct: 85 SPGPIYFLDPKVTRFGRSCTPAYSMQGRAK-SRGP-----EVTPGPGAYSPEKVPPVRHR 138
Query: 191 GP 192
P
Sbjct: 139 TP 140
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 33.5 bits (75), Expect = 0.12
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Query: 110 GRHEDESRTVLHVLGDRTYCKAPGPTHALSPPHSSTCENRAPEASKGGRAQDSRGPGPGT 169
GRH + L + G+ P A + PH S + + GR Q+ PG G+
Sbjct: 42 GRHA-AAAAALQLYGNSAAGFPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGS 100
Query: 170 EPALCGSGPSSPQQAPPAVHSGPC 193
A + P P PP PC
Sbjct: 101 PAAAYQAAPPPPPHPPPPPPPPPC 124
>gi|239753856 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 33.5 bits (75), Expect = 0.12
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 147 ENRAPEASKGGRAQDSRGPGPGTEPA-LCGSGPSSPQQA 184
E AP A+ G A SRG GPGT P CG GP +P ++
Sbjct: 3 ELEAPTATARGTAS-SRGCGPGTAPPPSCGRGPETPSRS 40
>gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo
sapiens]
Length = 261
Score = 33.5 bits (75), Expect = 0.12
Identities = 21/52 (40%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 134 PTHALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAP 185
PT PP S R A +GG A P P T G GPSSP AP
Sbjct: 175 PTLQPLPPPGSARRPRRGRAGRGGAA-----PAPPTGSMRAGPGPSSPSAAP 221
>gi|239748415 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 33.5 bits (75), Expect = 0.12
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 147 ENRAPEASKGGRAQDSRGPGPGTEPA-LCGSGPSSPQQA 184
E AP A+ G A SRG GPGT P CG GP +P ++
Sbjct: 3 ELEAPTATARGTAS-SRGCGPGTAPPPSCGRGPETPSRS 40
>gi|239745372 PREDICTED: hypothetical protein XP_002343483 [Homo
sapiens]
Length = 261
Score = 33.5 bits (75), Expect = 0.12
Identities = 21/52 (40%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 134 PTHALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAP 185
PT PP S R A +GG A P P T G GPSSP AP
Sbjct: 175 PTLQPLPPPGSARRPRRGRAGRGGAA-----PAPPTGSMRAGPGPSSPSAAP 221
>gi|239742343 PREDICTED: hypothetical protein XP_002342497 [Homo
sapiens]
Length = 208
Score = 33.5 bits (75), Expect = 0.12
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 147 ENRAPEASKGGRAQDSRGPGPGTEPA-LCGSGPSSPQQA 184
E AP A+ G A SRG GPGT P CG GP +P ++
Sbjct: 3 ELEAPTATARGTAS-SRGCGPGTAPPPSCGRGPETPSRS 40
>gi|56711322 ring finger protein 43 [Homo sapiens]
Length = 783
Score = 33.5 bits (75), Expect = 0.12
Identities = 45/181 (24%), Positives = 68/181 (37%), Gaps = 30/181 (16%)
Query: 25 GRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGRRPILWASSSGTPTVPPLQPFV-GR 83
G D V ++C +S ++ V S C LS P+++ S G P +QP V R
Sbjct: 473 GSSSDSV-VNCTDIS--LQGVHGSSSTFCSSLSSDFDPLVYCSPKGDPQRVDMQPSVTSR 529
Query: 84 LRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVLHVLGDRTYCKAPGPTHAL----- 138
RSLDS + E +S S + + RH + + + + PGP +
Sbjct: 530 PRSLDSVVPTGETQVS---SHVHYHRHRHHHYKKRF------QWHGRKPGPETGVPQSRP 580
Query: 139 ---------SPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAPPAVH 189
PP R+ A+ GR + + P EPA GP P+
Sbjct: 581 PIPRTQPQPEPPSPDQQVTRSNSAAPSGRLSNPQCPRALPEPA---PGPVDASSICPSTS 637
Query: 190 S 190
S
Sbjct: 638 S 638
>gi|38327539 inositol polyphosphate-5-phosphatase E [Homo sapiens]
Length = 644
Score = 33.5 bits (75), Expect = 0.12
Identities = 37/131 (28%), Positives = 48/131 (36%), Gaps = 32/131 (24%)
Query: 75 PPLQPFVGRLRSLDS-GIRRLELLLSAGDSGTFFCKGRHED-ESRTVLHVLGDRTYCKAP 132
PP +P + R SLD G RR +G ED E+R + P
Sbjct: 74 PPARPRLERALSLDDKGWRRRRF------------RGSQEDLEARNGTSPSRGSVQSEGP 121
Query: 133 G-PTHALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEP----------------ALCG 175
G P H+ SPP ST P+ S+G + + P G P A+ G
Sbjct: 122 GAPAHSCSPPCLSTSLQEIPK-SRGVLSSERGSPSSGGNPLSGVASSSPNLPHRDAAVAG 180
Query: 176 SGPSSPQQAPP 186
S P P PP
Sbjct: 181 SSPRLPSLLPP 191
Score = 30.4 bits (67), Expect = 0.98
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 137 ALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTE-PALCGSGPSSPQQAPPAVHSGP 192
A PP T + + P A RA S PG+E PAL S P++P P + P
Sbjct: 14 APQPPEGRTLQGQLPGAPPAQRA-GSPPDAPGSESPALACSTPATPSGEDPPARAAP 69
>gi|51093874 proline rich 19 [Homo sapiens]
Length = 356
Score = 33.5 bits (75), Expect = 0.12
Identities = 33/125 (26%), Positives = 43/125 (34%), Gaps = 11/125 (8%)
Query: 54 KGLSKGRRPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHE 113
K L RRP+ PP+ P +L + G LS G F HE
Sbjct: 31 KALVGSRRPLAHHDPPVAIRDPPVVPTASKLVVITQG------RLSREHRGLF----NHE 80
Query: 114 DESRTVLHVLGDRTYCKAPGPTHALSPPHSSTCENRAPEA-SKGGRAQDSRGPGPGTEPA 172
+S V +L T A P + AP + K + GPGP + P
Sbjct: 81 VKSLDVARLLSSGTLVPGSPTLPAKPSPSPGRAQEPAPRSRDKENQVPGGSGPGPPSSPE 140
Query: 173 LCGSG 177
L G G
Sbjct: 141 LSGVG 145
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 33.1 bits (74), Expect = 0.15
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 132 PGPTHALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAPPA 187
P P +PP SS+ P S G GP P PA+ + P +P PP+
Sbjct: 117 PAPGVGSAPPASSSAPPATPPTS-GAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPS 171
Score = 30.0 bits (66), Expect = 1.3
Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 132 PGPTHALSPPHSSTCENRAPEASKGGRAQDSRGPG-PGTEPALCGSGPSSPQQAPPAVHS 190
P P S P + AP A S P P T A GSGP PPAV S
Sbjct: 100 PPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTS 159
Query: 191 GP 192
P
Sbjct: 160 AP 161
Score = 29.3 bits (64), Expect = 2.2
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 140 PPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAPPA 187
PPH + + P ++ GPG P + GS P + APPA
Sbjct: 88 PPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGV-GSAPPASSSAPPA 134
>gi|18959210 WIRE protein [Homo sapiens]
Length = 440
Score = 33.1 bits (74), Expect = 0.15
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 12/62 (19%)
Query: 130 KAPGPTHALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAPPAVH 189
K PGP L+PP P S +R P P +P G+ P P PP +
Sbjct: 286 KTPGPVRGLAPP---------PPTSASPSLLSNRPPPPARDPPSRGAAPPPP---PPVIR 333
Query: 190 SG 191
+G
Sbjct: 334 NG 335
>gi|239749217 PREDICTED: similar to Mucin-12, partial [Homo sapiens]
Length = 861
Score = 32.7 bits (73), Expect = 0.20
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 127 TYCKAPGPTHALSPPHSSTCENRAPEASKGGRAQDSRG----PGPGTEPALCGSGPSSP 181
+Y +PG T P SST R+ E++ +QD+ G P T L G +SP
Sbjct: 740 SYHSSPGSTATTHFPDSSTTSGRSEESTASHSSQDATGTIVLPARSTNSVLLGESTTSP 798
Score = 28.9 bits (63), Expect = 2.8
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 16/99 (16%)
Query: 103 SGTFFCKGRHEDES----RTVLHVLGDR--TYCKAPGPTHALSPPHSSTCENRAPEASKG 156
S TF+ R D + RT + ++ T PGPTH ++ P S+T P S+
Sbjct: 136 STTFYSSPRSPDRTLSPARTTSSGVSEKSTTSHSRPGPTHTIAFPDSTT----MPGVSQE 191
Query: 157 GRAQDSRGPGPGTEPALCGSGPSSPQQAPP---AVHSGP 192
A S PG+ G ++P P HS P
Sbjct: 192 STASHSI---PGSTDTTLSPGTTTPSSLGPESTTFHSSP 227
Score = 28.9 bits (63), Expect = 2.8
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 116 SRTVLHVLGDRTYCKAPGPTHALSPPHSSTCENRAPE-ASKGGRAQDSRGPGPGTEPALC 174
S T HV Y ++PG T + P SST + E A+ G ++ P T AL
Sbjct: 348 SATSGHVEESTAYHRSPGSTQTMHFPESSTTSGHSEESATFHGSTTHTKSSTPSTTAALA 407
Query: 175 GSGPSSPQQAPPAVH 189
+ S + H
Sbjct: 408 HTSYHSSLGSTETTH 422
>gi|5454106 TBP-related factor 10 [Homo sapiens]
Length = 218
Score = 32.7 bits (73), Expect = 0.20
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 12/65 (18%)
Query: 131 APGPTHALSPP----HSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAPP 186
APGP +S P S+ EN+A A G GPG A G+GP + + P
Sbjct: 20 APGPAPPVSAPAALPSSTAAENKASPAGTAG--------GPGAGAAAGGTGPLAARAGEP 71
Query: 187 AVHSG 191
A G
Sbjct: 72 AERRG 76
>gi|59853099 dynamin 1 isoform 1 [Homo sapiens]
Length = 864
Score = 32.7 bits (73), Expect = 0.20
Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 13/60 (21%)
Query: 131 APGPTHALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAPPAVHS 190
APGP PP S P S+ G + D GP P PS P +APP V S
Sbjct: 799 APGP-----PPAGSALGGAPPVPSRPGASPDPFGPPPQV--------PSRPNRAPPGVPS 845
Score = 31.6 bits (70), Expect = 0.44
Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 134 PTHALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAPPAVHSGP 192
P SP S T + RAP SRGP PG PA G + P + P P
Sbjct: 769 PAGRRSPTSSPTPQRRAPAVPPA--RPGSRGPAPGPPPAGSALGGAPPVPSRPGASPDP 825
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 32.7 bits (73), Expect = 0.20
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 125 DRTYCKAPGPTHALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPS-SPQQ 183
+R+ K PT + P APE + + RG GTEP G+ PS +P
Sbjct: 432 ERSVPKEAEPTPPVLPDEEKGPPGPAPEPEREAETEPERGA--GTEPERIGTEPSTAPAP 489
Query: 184 APPAVHS 190
+PPA S
Sbjct: 490 SPPAPKS 496
Score = 28.9 bits (63), Expect = 2.8
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 132 PGPTHALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAPP 186
PGP L PP + + S A G PG +P+ S P++P+ A P
Sbjct: 293 PGPPAPLPPPGGARARRARLQHSSALTASVEEGGVPGEDPS---SRPATPELAEP 344
>gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens]
Length = 587
Score = 32.3 bits (72), Expect = 0.26
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 127 TYCKAPGPTHALSPPHSSTCENRAPEASKGGRAQDSRG----PGPGTEPALCGSGPSSP 181
+Y +PG T P SST R+ E++ +QD+ G P T L G +SP
Sbjct: 43 SYHSSPGSTATTHFPDSSTTSGRSEESTASHSSQDATGTIVLPARSTTSVLLGESTTSP 101
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 32.3 bits (72), Expect = 0.26
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 127 TYCKAPGPTHALSPPHSSTCENRAPEASKGGRAQDSRG----PGPGTEPALCGSGPSSP 181
+Y +PG T P SST R+ E++ +QD+ G P T L G +SP
Sbjct: 884 SYHSSPGSTATTHFPDSSTTSGRSEESTASHSSQDATGTIVLPARSTTSVLLGESTTSP 942
Score = 32.3 bits (72), Expect = 0.26
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 127 TYCKAPGPTHALSPPHSSTCENRAPEASKGGRAQDSRG----PGPGTEPALCGSGPSSP 181
+Y +PG T P SST R+ E++ +QD+ G P T L G +SP
Sbjct: 1967 SYHSSPGSTATTHFPDSSTTSGRSEESTASHSSQDATGTIVLPARSTTSVLLGESTTSP 2025
Score = 32.3 bits (72), Expect = 0.26
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 127 TYCKAPGPTHALSPPHSSTCENRAPEASKGGRAQDSRG----PGPGTEPALCGSGPSSP 181
+Y +PG T P SST R+ E++ +QD+ G P T L G +SP
Sbjct: 3524 SYHSSPGSTATTHFPDSSTTSGRSEESTASHSSQDATGTIVLPARSTTSVLLGESTTSP 3582
Score = 32.3 bits (72), Expect = 0.26
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 127 TYCKAPGPTHALSPPHSSTCENRAPEASKGGRAQDSRG----PGPGTEPALCGSGPSSP 181
+Y +PG T P SST R+ E++ +QD+ G P T L G +SP
Sbjct: 4607 SYHSSPGSTATTHFPDSSTTSGRSEESTASHSSQDATGTIVLPARSTTSVLLGESTTSP 4665
Score = 28.9 bits (63), Expect = 2.8
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 16/99 (16%)
Query: 103 SGTFFCKGRHEDES----RTVLHVLGDR--TYCKAPGPTHALSPPHSSTCENRAPEASKG 156
S TF+ R D + RT + ++ T PGPTH ++ P S+T P S+
Sbjct: 280 STTFYSSPRSPDRTLSPARTTSSGVSEKSTTSHSRPGPTHTIAFPDSTT----MPGVSQE 335
Query: 157 GRAQDSRGPGPGTEPALCGSGPSSPQQAPP---AVHSGP 192
A S PG+ G ++P P HS P
Sbjct: 336 STASHSI---PGSTDTTLSPGTTTPSSLGPESTTFHSSP 371
Score = 28.9 bits (63), Expect = 2.8
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 116 SRTVLHVLGDRTYCKAPGPTHALSPPHSSTCENRAPE-ASKGGRAQDSRGPGPGTEPALC 174
S T HV Y ++PG T + P SST + E A+ G ++ P T AL
Sbjct: 492 SATSGHVEESTAYHRSPGSTQTMHFPESSTTSGHSEESATFHGSTTHTKSSTPSTTAALA 551
Query: 175 GSGPSSPQQAPPAVH 189
+ S + H
Sbjct: 552 HTSYHSSLGSTETTH 566
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,852,079
Number of Sequences: 37866
Number of extensions: 634806
Number of successful extensions: 3973
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 183
Number of HSP's that attempted gapping in prelim test: 3682
Number of HSP's gapped (non-prelim): 479
length of query: 193
length of database: 18,247,518
effective HSP length: 97
effective length of query: 96
effective length of database: 14,574,516
effective search space: 1399153536
effective search space used: 1399153536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.