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Search of human proteins with 19913375
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19913375 G6B protein isoform G6b-B precursor [Homo sapiens]
(241 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19913375 G6B protein isoform G6b-B precursor [Homo sapiens] 496 e-141
gi|19913377 G6B protein isoform G6b-C precursor [Homo sapiens] 390 e-109
gi|19913381 G6B protein isoform G6b-E precursor [Homo sapiens] 384 e-107
gi|19913385 G6B protein isoform G6b-G precursor [Homo sapiens] 379 e-105
gi|19913373 G6B protein isoform G6b-A precursor [Homo sapiens] 379 e-105
gi|19913379 G6B protein isoform G6b-D precursor [Homo sapiens] 286 1e-77
gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens] 35 0.045
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 35 0.076
gi|30061491 erythrocyte membrane protein band 4.1-like 1 isoform... 33 0.17
gi|30061489 erythrocyte membrane protein band 4.1-like 1 isoform... 33 0.17
gi|215820635 protein phosphatase 1, regulatory subunit 13 like [... 33 0.29
gi|63003907 protein phosphatase 1, regulatory subunit 13 like [H... 33 0.29
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens] 32 0.49
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens] 32 0.49
gi|71143119 signal-induced proliferation-associated 1 like 3 [Ho... 32 0.64
gi|239744142 PREDICTED: hypothetical protein isoform 1 [Homo sap... 31 0.84
gi|239744140 PREDICTED: hypothetical protein [Homo sapiens] 31 0.84
gi|66932975 gephyrin isoform 2 [Homo sapiens] 31 0.84
gi|57863314 vacuolar protein sorting 37C [Homo sapiens] 31 0.84
gi|90652861 protein-tyrosine-phosphatase non-receptor 5 isoform ... 31 1.1
gi|90652859 protein-tyrosine-phosphatase non-receptor 5 isoform ... 31 1.1
gi|90652853 protein-tyrosine-phosphatase non-receptor 5 isoform ... 31 1.1
gi|56711322 ring finger protein 43 [Homo sapiens] 31 1.1
gi|10880983 gephyrin isoform 1 [Homo sapiens] 31 1.1
gi|169176429 PREDICTED: hypothetical protein [Homo sapiens] 30 1.4
gi|148806874 hypothetical protein LOC54754 [Homo sapiens] 30 1.4
gi|61675704 hypothetical protein LOC347487 [Homo sapiens] 30 1.9
gi|118600983 chondroitin sulfate proteoglycan 3 [Homo sapiens] 30 1.9
gi|239753349 PREDICTED: hypothetical protein LOC285141 [Homo sap... 30 2.5
gi|239747917 PREDICTED: hypothetical protein LOC285141 [Homo sap... 30 2.5
>gi|19913375 G6B protein isoform G6b-B precursor [Homo sapiens]
Length = 241
Score = 496 bits (1278), Expect = e-141
Identities = 241/241 (100%), Positives = 241/241 (100%)
Query: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
Sbjct: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
Query: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
Sbjct: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
Query: 121 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF 180
HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF
Sbjct: 121 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF 180
Query: 181 APLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRPRRLSTADPADASTIYAVV 240
APLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRPRRLSTADPADASTIYAVV
Sbjct: 181 APLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRPRRLSTADPADASTIYAVV 240
Query: 241 V 241
V
Sbjct: 241 V 241
>gi|19913377 G6B protein isoform G6b-C precursor [Homo sapiens]
Length = 217
Score = 390 bits (1003), Expect = e-109
Identities = 202/241 (83%), Positives = 203/241 (84%), Gaps = 24/241 (9%)
Query: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
Sbjct: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
Query: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
Sbjct: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
Query: 121 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF 180
HVLGDRTYCKAPGPTHG+ L L P P
Sbjct: 121 HVLGDRTYCKAPGPTHGACPRNRFDHSLDL------------------LCP------PHI 156
Query: 181 APLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRPRRLSTADPADASTIYAVV 240
APLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRPRRLSTADPADASTIYAVV
Sbjct: 157 APLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRPRRLSTADPADASTIYAVV 216
Query: 241 V 241
V
Sbjct: 217 V 217
>gi|19913381 G6B protein isoform G6b-E precursor [Homo sapiens]
Length = 197
Score = 384 bits (985), Expect = e-107
Identities = 197/241 (81%), Positives = 197/241 (81%), Gaps = 44/241 (18%)
Query: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
Sbjct: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
Query: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
Sbjct: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
Query: 121 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF 180
HVLGDRTYCKAPGPTH
Sbjct: 121 HVLGDRTYCKAPGPTH-------------------------------------------- 136
Query: 181 APLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRPRRLSTADPADASTIYAVV 240
APLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRPRRLSTADPADASTIYAVV
Sbjct: 137 APLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRPRRLSTADPADASTIYAVV 196
Query: 241 V 241
V
Sbjct: 197 V 197
>gi|19913385 G6B protein isoform G6b-G precursor [Homo sapiens]
Length = 222
Score = 379 bits (973), Expect = e-105
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
Sbjct: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
Query: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
Sbjct: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
Query: 121 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF 180
HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF
Sbjct: 121 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF 180
Query: 181 A 181
A
Sbjct: 181 A 181
>gi|19913373 G6B protein isoform G6b-A precursor [Homo sapiens]
Length = 237
Score = 379 bits (973), Expect = e-105
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
Sbjct: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
Query: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
Sbjct: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
Query: 121 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF 180
HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF
Sbjct: 121 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF 180
Query: 181 A 181
A
Sbjct: 181 A 181
>gi|19913379 G6B protein isoform G6b-D precursor [Homo sapiens]
Length = 193
Score = 286 bits (731), Expect = 1e-77
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
Sbjct: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
Query: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
Sbjct: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
Query: 121 HVLGDRTYCKAPGPTH 136
HVLGDRTYCKAPGPTH
Sbjct: 121 HVLGDRTYCKAPGPTH 136
>gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens]
Length = 4242
Score = 35.4 bits (80), Expect = 0.045
Identities = 39/141 (27%), Positives = 54/141 (38%), Gaps = 12/141 (8%)
Query: 55 GLSKGRR--PILWASSSGTPTVPPLQPFVGRLRSLD--SGIRRLELLLSAGDSGTFFCKG 110
GLS +R PI A S+ P L P +G L + S RL ++ G +F +
Sbjct: 3423 GLSGRKRLGPIS-ADSTTAPLEKELPPHLGELTVAEETSSSLRLSWTVAQGPFDSFVVQY 3481
Query: 111 RHEDESRTVLHVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLP 170
R D + V D+ G Y LL LLG + + ALG+
Sbjct: 3482 RDTDGQPRAVPVAADQRTVTVEDLEPGKKYKFLLYGLLGGKRLGPVSALGMT-------A 3534
Query: 171 PQPIRPLPRFAPLVKTEPQRP 191
P+ P P AP P+ P
Sbjct: 3535 PEEDTPAPELAPEAPEPPEEP 3555
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 34.7 bits (78), Expect = 0.076
Identities = 49/164 (29%), Positives = 68/164 (41%), Gaps = 47/164 (28%)
Query: 66 ASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDS-----GTFFC---------KGR 111
A SS PT PP QPF+ R R +EL ++ G S G +GR
Sbjct: 2812 APSSSLPT-PPQQPFIAR--------RHIELGVTGGGSPENGDGALLAITPPAVKRRRGR 2862
Query: 112 HEDESRTVLHVLGDRTYCKAP-----GPTHGS---VYPQLLI---PLLGAGLVLGLGALG 160
++R+ R +AP G T+G+ P+ LI P+L L+ G LG
Sbjct: 2863 PPKKNRSPADA--GRGVDEAPSSTLKGKTNGADPVPGPETLIVADPVLEPQLIPGPQPLG 2920
Query: 161 LVWWLHRRLPPQPI-RPLPRFAPLVKTEPQRPVKEEEPKIPGDL 203
PQP+ RP P +P+ K RP K + IPG +
Sbjct: 2921 ----------PQPVHRPNPLLSPVEKRRRGRPPKARDLPIPGTI 2954
>gi|30061491 erythrocyte membrane protein band 4.1-like 1 isoform b
[Homo sapiens]
Length = 779
Score = 33.5 bits (75), Expect = 0.17
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 15/91 (16%)
Query: 163 WWLHRRLPPQPIRPLPRFAPLV-------------KTEPQRPVKEEEPKIPGDLDQEPSL 209
W RRLP P P P+ P K +P RP E D DQE
Sbjct: 458 WERERRLPSSPASPSPKGTPEKANERAGLREGSEEKVKPPRPRAPESDTGDEDQDQERDT 517
Query: 210 LYADLDHLALSRPRRLSTADPADASTIYAVV 240
++ +HLA+ R+ S+ + S++ A V
Sbjct: 518 VFLKDNHLAIE--RKCSSITVSSTSSLEAEV 546
>gi|30061489 erythrocyte membrane protein band 4.1-like 1 isoform a
[Homo sapiens]
Length = 881
Score = 33.5 bits (75), Expect = 0.17
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 15/91 (16%)
Query: 163 WWLHRRLPPQPIRPLPRFAPLV-------------KTEPQRPVKEEEPKIPGDLDQEPSL 209
W RRLP P P P+ P K +P RP E D DQE
Sbjct: 532 WERERRLPSSPASPSPKGTPEKANERAGLREGSEEKVKPPRPRAPESDTGDEDQDQERDT 591
Query: 210 LYADLDHLALSRPRRLSTADPADASTIYAVV 240
++ +HLA+ R+ S+ + S++ A V
Sbjct: 592 VFLKDNHLAIE--RKCSSITVSSTSSLEAEV 620
>gi|215820635 protein phosphatase 1, regulatory subunit 13 like
[Homo sapiens]
Length = 828
Score = 32.7 bits (73), Expect = 0.29
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 25/91 (27%)
Query: 171 PQP-IRPLPRFAPLVKTEPQRP-------------VKEEEPKIPGDLDQEPS-------- 208
PQP +P P+ P +T+PQ P V E PK P +L+ EP
Sbjct: 414 PQPQSQPQPQLPPQPQTQPQTPTPAPQHPQQTWPPVNEGPPKPPTELEPEPEIEGLLTPV 473
Query: 209 LLYADLDHLALSR---PRRLSTADPADASTI 236
L D+D ++R P RL A P +A ++
Sbjct: 474 LEAGDVDEGPVARPLSPTRLQPALPPEAQSV 504
>gi|63003907 protein phosphatase 1, regulatory subunit 13 like [Homo
sapiens]
Length = 828
Score = 32.7 bits (73), Expect = 0.29
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 25/91 (27%)
Query: 171 PQP-IRPLPRFAPLVKTEPQRP-------------VKEEEPKIPGDLDQEPS-------- 208
PQP +P P+ P +T+PQ P V E PK P +L+ EP
Sbjct: 414 PQPQSQPQPQLPPQPQTQPQTPTPAPQHPQQTWPPVNEGPPKPPTELEPEPEIEGLLTPV 473
Query: 209 LLYADLDHLALSR---PRRLSTADPADASTI 236
L D+D ++R P RL A P +A ++
Sbjct: 474 LEAGDVDEGPVARPLSPTRLQPALPPEAQSV 504
>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
Length = 694
Score = 32.0 bits (71), Expect = 0.49
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 164 WLHRRLPPQPIRPLPRFAPLVKTEPQRPVKE-EEPKIPGDLDQEPSLLYADLDHLALSRP 222
W + P Q LP+ P+ KT+PQ+PV E P+ P + P+ A D P
Sbjct: 156 WFFKGFPKQV---LPQPMPIKKTKPQQPVSEPAAPEQPAPEPKHPARAPARGDSEDRRGP 212
Query: 223 RRLSTADPADA 233
+ + DPA A
Sbjct: 213 GQKTGPDPASA 223
>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
Length = 690
Score = 32.0 bits (71), Expect = 0.49
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 164 WLHRRLPPQPIRPLPRFAPLVKTEPQRPVKE-EEPKIPGDLDQEPSLLYADLDHLALSRP 222
W + P Q LP+ P+ KT+PQ+PV E P+ P + P+ A D P
Sbjct: 152 WFFKGFPKQV---LPQPMPIKKTKPQQPVSEPAAPEQPAPEPKHPARAPARGDSEDRRGP 208
Query: 223 RRLSTADPADA 233
+ + DPA A
Sbjct: 209 GQKTGPDPASA 219
>gi|71143119 signal-induced proliferation-associated 1 like 3 [Homo
sapiens]
Length = 1781
Score = 31.6 bits (70), Expect = 0.64
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 7/36 (19%)
Query: 51 PACKGLSKGRRPILWASSSGTPT-------VPPLQP 79
PA G SKG RP L++S S TPT PP QP
Sbjct: 1367 PAVAGQSKGYRPKLYSSGSSTPTGLAGGSRDPPRQP 1402
>gi|239744142 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 629
Score = 31.2 bits (69), Expect = 0.84
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 167 RRLPPQPIRPLPRFAPLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADL 214
RR PPQP R A L PQRP E K+P ++ E Y D+
Sbjct: 479 RRPPPQPHRRAETKARLPPPRPQRPA---ETKVPEEIPPEVVQEYVDI 523
>gi|239744140 PREDICTED: hypothetical protein [Homo sapiens]
Length = 878
Score = 31.2 bits (69), Expect = 0.84
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 167 RRLPPQPIRPLPRFAPLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADL 214
RR PPQP R A L PQRP E K+P ++ E Y D+
Sbjct: 479 RRPPPQPHRRAETKARLPPPRPQRPA---ETKVPEEIPPEVVQEYVDI 523
>gi|66932975 gephyrin isoform 2 [Homo sapiens]
Length = 736
Score = 31.2 bits (69), Expect = 0.84
Identities = 39/137 (28%), Positives = 54/137 (39%), Gaps = 17/137 (12%)
Query: 116 SRTVLHVLGDRTYCKAPGPTHGSVYP-QLLIPLLGAGLVLGLGALGLVWWLHRRL----- 169
SR V + G PG GS Q ++P L + L A+ V +H L
Sbjct: 129 SRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVHDELEDLPS 188
Query: 170 PPQPIRPLPRFAPLVKTEP---QRPVKEEEPKIPGDLDQEPS--------LLYADLDHLA 218
PP P+ P P +P +TE Q +EEE K G E S + A +
Sbjct: 189 PPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHITAAAIAAKIPDSI 248
Query: 219 LSRPRRLSTADPADAST 235
+SR ++ D A ST
Sbjct: 249 ISRGVQVLPRDTASLST 265
>gi|57863314 vacuolar protein sorting 37C [Homo sapiens]
Length = 355
Score = 31.2 bits (69), Expect = 0.84
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 170 PPQPIRPLPR-FAPLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADLDHLAL 219
PP P+RP+P+ P+V+ +PQ P+ P P PSL H AL
Sbjct: 175 PPPPVRPVPQGTPPVVEEQPQPPL--AMPPYPLPYSPSPSLPVGPTAHGAL 223
>gi|90652861 protein-tyrosine-phosphatase non-receptor 5 isoform b
[Homo sapiens]
Length = 533
Score = 30.8 bits (68), Expect = 1.1
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 141 PQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLP 178
P LL+ L GLVL LVW L R PP+P PLP
Sbjct: 112 PSLLLVFLSVGLVL---VTTLVWHL-LRTPPEPPTPLP 145
>gi|90652859 protein-tyrosine-phosphatase non-receptor 5 isoform a
[Homo sapiens]
Length = 565
Score = 30.8 bits (68), Expect = 1.1
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 141 PQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLP 178
P LL+ L GLVL LVW L R PP+P PLP
Sbjct: 144 PSLLLVFLSVGLVL---VTTLVWHL-LRTPPEPPTPLP 177
>gi|90652853 protein-tyrosine-phosphatase non-receptor 5 isoform a
[Homo sapiens]
Length = 565
Score = 30.8 bits (68), Expect = 1.1
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 141 PQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLP 178
P LL+ L GLVL LVW L R PP+P PLP
Sbjct: 144 PSLLLVFLSVGLVL---VTTLVWHL-LRTPPEPPTPLP 177
>gi|56711322 ring finger protein 43 [Homo sapiens]
Length = 783
Score = 30.8 bits (68), Expect = 1.1
Identities = 57/224 (25%), Positives = 82/224 (36%), Gaps = 50/224 (22%)
Query: 25 GRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGRRPILWASSSGTPTVPPLQPFV-GR 83
G D V ++C +S ++ V S C LS P+++ S G P +QP V R
Sbjct: 473 GSSSDSV-VNCTDIS--LQGVHGSSSTFCSSLSSDFDPLVYCSPKGDPQRVDMQPSVTSR 529
Query: 84 LRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVLHVLGDRTYCKAPGPTHGSVYPQL 143
RSLDS + E +S S + + RH + + + + PGP G PQ
Sbjct: 530 PRSLDSVVPTGETQVS---SHVHYHRHRHHHYKKRF------QWHGRKPGPETG--VPQS 578
Query: 144 LIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLP--------RFAPLVK-TEPQRPVKE 194
P+ R PQP P P AP + + PQ P
Sbjct: 579 RPPI-------------------PRTQPQPEPPSPDQQVTRSNSAAPSGRLSNPQCPRAL 619
Query: 195 EEPKIPGDLD------QEPSLLYADLDHLALSRPRRLSTADPAD 232
EP PG +D SL L+ P+R P++
Sbjct: 620 PEP-APGPVDASSICPSTSSLFNLQKSSLSARHPQRKRRGGPSE 662
>gi|10880983 gephyrin isoform 1 [Homo sapiens]
Length = 769
Score = 30.8 bits (68), Expect = 1.1
Identities = 32/102 (31%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 116 SRTVLHVLGDRTYCKAPGPTHGSVYP-QLLIPLLGAGLVLGLGALGLVWWLHRRL----- 169
SR V + G PG GS Q ++P L + L A+ V +H L
Sbjct: 129 SRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVHDELEDLPS 188
Query: 170 PPQPIRPLPRFAPLVKTEP---QRPVKEEEPKIPGDLDQEPS 208
PP P+ P P +P +TE Q +EEE K G E S
Sbjct: 189 PPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDS 230
>gi|169176429 PREDICTED: hypothetical protein [Homo sapiens]
Length = 310
Score = 30.4 bits (67), Expect = 1.4
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Query: 111 RHEDESRTVLHVLGDRTYCK-APGPTHGSVYPQLLIP--LLGAGLVLGLGALGLVWWLHR 167
+ +++ + L GD + + +PGP G+VYP L L V +G W H
Sbjct: 157 QEQEDKKRALETQGDLSSFRCSPGPLEGNVYPNCLTENNLTDKAQV---SPVGSCWEGH- 212
Query: 168 RLPPQPIRPLPRFAPLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRP 222
+ P P PL K +P V + ++ L ++ + D DHL LS P
Sbjct: 213 -VVPSSHSPAGGVLPLKKPDPSPTVLLDPARVCFLLPEKVAQEVQDKDHL-LSSP 265
>gi|148806874 hypothetical protein LOC54754 [Homo sapiens]
Length = 756
Score = 30.4 bits (67), Expect = 1.4
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 170 PPQPIRPLPRFAPLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADL 214
PP+P RP A L PQRP E K+P ++ E Y D+
Sbjct: 360 PPRPQRPAETNAHLPPPRPQRPA---ETKVPEEIPPEVVQEYVDI 401
>gi|61675704 hypothetical protein LOC347487 [Homo sapiens]
Length = 361
Score = 30.0 bits (66), Expect = 1.9
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 172 QPIRPLPRFAPLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRPRRLSTADPA 231
+P+RP F PL + PQ + +P P +L + P + ++L R LS ++ A
Sbjct: 205 KPVRPPQLFKPLYSSHPQNEISPSKPFGPQELAKPPK-HFNPKRSVSLGRAALLSNSELA 263
Query: 232 DASTIY 237
+ Y
Sbjct: 264 ETCQPY 269
>gi|118600983 chondroitin sulfate proteoglycan 3 [Homo sapiens]
Length = 1321
Score = 30.0 bits (66), Expect = 1.9
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 34 SCGGVSHPIRWVWAPSF--PACKGLSKGRRPILWASSSGTPTVPPLQP 79
S GG S P W+W P+ P+ G S R P+L + P+ P P
Sbjct: 555 SAGGKSSPEPWLWPPTMVPPSISGHS--RAPVLELEKAEGPSARPATP 600
>gi|239753349 PREDICTED: hypothetical protein LOC285141 [Homo
sapiens]
Length = 327
Score = 29.6 bits (65), Expect = 2.5
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 26 RPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
RPG RV CG + W+WAP A +G +GR
Sbjct: 99 RPGARV---CGPLYRTWFWLWAPGPVAARGRREGR 130
>gi|239747917 PREDICTED: hypothetical protein LOC285141 [Homo
sapiens]
Length = 327
Score = 29.6 bits (65), Expect = 2.5
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 26 RPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
RPG RV CG + W+WAP A +G +GR
Sbjct: 99 RPGARV---CGPLYRTWFWLWAPGPVAARGRREGR 130
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.141 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,678,506
Number of Sequences: 37866
Number of extensions: 655335
Number of successful extensions: 2341
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 2284
Number of HSP's gapped (non-prelim): 96
length of query: 241
length of database: 18,247,518
effective HSP length: 99
effective length of query: 142
effective length of database: 14,498,784
effective search space: 2058827328
effective search space used: 2058827328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.