Guide to the Human Genome
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Name: LOC285141 Sequence: fasta or formatted (327aa) NCBI GI: 239753349
Description:

PREDICTED: hypothetical protein LOC285141

Not currently referenced in the text

Other entries for this name:
alt mRNA {327aa} PREDICTED: hypothetical protein LOC285141
alt mRNA {327aa} PREDICTED: hypothetical protein LOC285141
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         29           3
 C cysteine            2.4          8           1
 D aspartate           7.0         23           3
 E glutamate          11.9         39           2
 F phenylalanine       2.1          7           2
 G glycine             6.4         21           2
 H histidine           0.6          2           1
 I isoleucine          1.8          6           1
 K lysine              4.0         13           2
 L leucine             8.9         29           2
 M methionine          2.4          8           1
 N asparagine          2.8          9           2
 P proline             7.0         23           3
 Q glutamine           4.3         14           2
 R arginine            7.3         24           2
 S serine              9.5         31           2
 T threonine           6.1         20           2
 V valine              3.7         12           1
 W tryptophan          1.5          5           1
 Y tyrosine            1.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC285141 
LOC285141             1.000   PREDICTED: hypothetical protein LOC285141 
LOC285141             1.000   PREDICTED: hypothetical protein LOC285141 
HUWE1                 0.030   HECT, UBA and WWE domain containing 1 
MDN1                  0.028   MDN1, midasin homolog 
DMP1                  0.027   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
DMP1                  0.027   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
EIF5B                 0.025   eukaryotic translation initiation factor 5B 
NCL                   0.024   nucleolin 
RGAG4                 0.022   retrotransposon gag domain containing 4 
MTERFD2               0.022   MTERF domain containing 2 
TAF7L                 0.022   TATA box binding protein-associated factor, RNA poly...
ARID4A                0.020   retinoblastoma-binding protein 1 isoform III 
ARID4A                0.020   retinoblastoma-binding protein 1 isoform II 
ARID4A                0.020   retinoblastoma-binding protein 1 isoform I 
VPRBP                 0.020   HIV-1 Vpr binding protein 
LOC100293445          0.020   PREDICTED: hypothetical protein 
LOC100288225          0.020   PREDICTED: hypothetical protein 
LOC100288225          0.020   PREDICTED: hypothetical protein XP_002343333 
ATRX                  0.020   transcriptional regulator ATRX isoform 2 
ATRX                  0.020   transcriptional regulator ATRX isoform 1 
LOC647020             0.019   PREDICTED: similar to acidic (leucine-rich) nuclear...
LOC647020             0.019   PREDICTED: similar to acidic (leucine-rich) nuclear...
MYT1                  0.019   myelin transcription factor 1 
HTATSF1               0.019   HIV-1 Tat specific factor 1 
HTATSF1               0.019   HIV-1 Tat specific factor 1 
HIVEP2                0.019   human immunodeficiency virus type I enhancer bindin...
CHD2                  0.019   chromodomain helicase DNA binding protein 2 isoform...
NSBP1                 0.019   nucleosomal binding protein 1 
AP3B1                 0.019   adaptor-related protein complex 3, beta 1 subunit [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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