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Search of human proteins with 19882217
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19882217 mitochondrial translation optimization 1 homolog
isoform b [Homo sapiens]
(717 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19882217 mitochondrial translation optimization 1 homolog iso... 1434 0.0
gi|74024895 mitochondrial translation optimization 1 homolog iso... 1368 0.0
gi|183227703 mitochondrial translation optimization 1 homolog is... 1349 0.0
gi|223029405 zinc finger protein 619 isoform 3 [Homo sapiens] 39 0.022
gi|94680985 cyclin J-like [Homo sapiens] 38 0.029
gi|170932471 hypothetical protein LOC79703 [Homo sapiens] 38 0.029
gi|148277071 thioredoxin reductase 1 isoform 3 [Homo sapiens] 35 0.19
gi|148277065 thioredoxin reductase 1 isoform 1 [Homo sapiens] 35 0.19
gi|5454102 transforming, acidic coiled-coil containing protein 3... 35 0.24
gi|51243063 MAD2L1 binding protein isoform 1 [Homo sapiens] 34 0.54
gi|33519426 thioredoxin reductase 1 isoform 2 [Homo sapiens] 34 0.54
gi|33519430 thioredoxin reductase 1 isoform 2 [Homo sapiens] 34 0.54
gi|33519428 thioredoxin reductase 1 isoform 2 [Homo sapiens] 34 0.54
gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo sapi... 33 0.70
gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo sapi... 33 0.70
gi|229577391 pyridine nucleotide-disulphide oxidoreductase domai... 33 0.92
gi|6005810 mitogen-activated protein kinase kinase kinase kinase... 33 1.2
gi|23943928 hypothetical protein LOC140680 [Homo sapiens] 33 1.2
gi|30581135 structural maintenance of chromosomes 1A [Homo sapiens] 32 1.6
gi|60099474 tripartite motif-containing 61 [Homo sapiens] 32 1.6
gi|203098013 all-trans-13,14-dihydroretinol saturase [Homo sapiens] 32 1.6
gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens] 32 2.0
gi|8923708 FAD-dependent oxidoreductase domain containing 1 [Hom... 32 2.0
gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1 [... 32 2.7
gi|119943098 dihydropyrimidine dehydrogenase isoform 1 [Homo sap... 32 2.7
gi|66348062 fumarylacetoacetate hydrolase domain containing 1 is... 32 2.7
gi|148839316 NIMA-related kinase 4 [Homo sapiens] 31 3.5
gi|133908616 glycerol-3-phosphate dehydrogenase 2, mitochondrial... 31 3.5
gi|133908614 glycerol-3-phosphate dehydrogenase 2, mitochondrial... 31 3.5
gi|62543567 nudix (nucleoside diphosphate linked moiety X)-type ... 31 3.5
>gi|19882217 mitochondrial translation optimization 1 homolog
isoform b [Homo sapiens]
Length = 717
Score = 1434 bits (3713), Expect = 0.0
Identities = 717/717 (100%), Positives = 717/717 (100%)
Query: 1 MFYFRGCGRWVAVSFTKQQFPLARLSSDSAAPRTPHFDVIVIGGGHAGTEAATAAARCGS 60
MFYFRGCGRWVAVSFTKQQFPLARLSSDSAAPRTPHFDVIVIGGGHAGTEAATAAARCGS
Sbjct: 1 MFYFRGCGRWVAVSFTKQQFPLARLSSDSAAPRTPHFDVIVIGGGHAGTEAATAAARCGS 60
Query: 61 RTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGVHYKVLNRRKGP 120
RTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGVHYKVLNRRKGP
Sbjct: 61 RTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGVHYKVLNRRKGP 120
Query: 121 AVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVEDLILTEPEPEHTGKCRVSGVVLVD 180
AVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVEDLILTEPEPEHTGKCRVSGVVLVD
Sbjct: 121 AVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVEDLILTEPEPEHTGKCRVSGVVLVD 180
Query: 181 GSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGDQPSIGLAQTLEKLGFVVGRLKTGTP 240
GSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGDQPSIGLAQTLEKLGFVVGRLKTGTP
Sbjct: 181 GSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGDQPSIGLAQTLEKLGFVVGRLKTGTP 240
Query: 241 PRIAKESINFSILNKHIPDNPSIPFSFTNETVWIKPEDQLPCYLTHTNPRVDEIVLKNLH 300
PRIAKESINFSILNKHIPDNPSIPFSFTNETVWIKPEDQLPCYLTHTNPRVDEIVLKNLH
Sbjct: 241 PRIAKESINFSILNKHIPDNPSIPFSFTNETVWIKPEDQLPCYLTHTNPRVDEIVLKNLH 300
Query: 301 LNSHVKETTRGPRYCPSIESKVLRFPNRLHQVWLEPEGMDSDLIYPQGLSMTLPAELQEK 360
LNSHVKETTRGPRYCPSIESKVLRFPNRLHQVWLEPEGMDSDLIYPQGLSMTLPAELQEK
Sbjct: 301 LNSHVKETTRGPRYCPSIESKVLRFPNRLHQVWLEPEGMDSDLIYPQGLSMTLPAELQEK 360
Query: 361 MITCIRGLEKAKVIQPDGVLLLLPRMECNGAISAHHNLPLPGYGVQYDYLDPRQITPSLE 420
MITCIRGLEKAKVIQPDGVLLLLPRMECNGAISAHHNLPLPGYGVQYDYLDPRQITPSLE
Sbjct: 361 MITCIRGLEKAKVIQPDGVLLLLPRMECNGAISAHHNLPLPGYGVQYDYLDPRQITPSLE 420
Query: 421 THLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLT 480
THLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLT
Sbjct: 421 THLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLT 480
Query: 481 TLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGI 540
TLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGI
Sbjct: 481 TLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGI 540
Query: 541 SVLKSIEFLSSKWKKLIPEASISTSRSLPVRALDVLKYEEVDMDSLAKAVPEPLKKYTKC 600
SVLKSIEFLSSKWKKLIPEASISTSRSLPVRALDVLKYEEVDMDSLAKAVPEPLKKYTKC
Sbjct: 541 SVLKSIEFLSSKWKKLIPEASISTSRSLPVRALDVLKYEEVDMDSLAKAVPEPLKKYTKC 600
Query: 601 RELAERLKIEATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKLHFS 660
RELAERLKIEATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKLHFS
Sbjct: 601 RELAERLKIEATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKLHFS 660
Query: 661 RPQTIGAASRIPGVTPAAIINLLRFVKTTQRRQSAMNESSKTDQYLCDADRLQEREL 717
RPQTIGAASRIPGVTPAAIINLLRFVKTTQRRQSAMNESSKTDQYLCDADRLQEREL
Sbjct: 661 RPQTIGAASRIPGVTPAAIINLLRFVKTTQRRQSAMNESSKTDQYLCDADRLQEREL 717
>gi|74024895 mitochondrial translation optimization 1 homolog
isoform a [Homo sapiens]
Length = 692
Score = 1368 bits (3542), Expect = 0.0
Identities = 692/717 (96%), Positives = 692/717 (96%), Gaps = 25/717 (3%)
Query: 1 MFYFRGCGRWVAVSFTKQQFPLARLSSDSAAPRTPHFDVIVIGGGHAGTEAATAAARCGS 60
MFYFRGCGRWVAVSFTKQQFPLARLSSDSAAPRTPHFDVIVIGGGHAGTEAATAAARCGS
Sbjct: 1 MFYFRGCGRWVAVSFTKQQFPLARLSSDSAAPRTPHFDVIVIGGGHAGTEAATAAARCGS 60
Query: 61 RTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGVHYKVLNRRKGP 120
RTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGVHYKVLNRRKGP
Sbjct: 61 RTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGVHYKVLNRRKGP 120
Query: 121 AVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVEDLILTEPEPEHTGKCRVSGVVLVD 180
AVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVEDLILTEPEPEHTGKCRVSGVVLVD
Sbjct: 121 AVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVEDLILTEPEPEHTGKCRVSGVVLVD 180
Query: 181 GSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGDQPSIGLAQTLEKLGFVVGRLKTGTP 240
GSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGDQPSIGLAQTLEKLGFVVGRLKTGTP
Sbjct: 181 GSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGDQPSIGLAQTLEKLGFVVGRLKTGTP 240
Query: 241 PRIAKESINFSILNKHIPDNPSIPFSFTNETVWIKPEDQLPCYLTHTNPRVDEIVLKNLH 300
PRIAKESINFSILNKHIPDNPSIPFSFTNETVWIKPEDQLPCYLTHTNPRVDEIVLKNLH
Sbjct: 241 PRIAKESINFSILNKHIPDNPSIPFSFTNETVWIKPEDQLPCYLTHTNPRVDEIVLKNLH 300
Query: 301 LNSHVKETTRGPRYCPSIESKVLRFPNRLHQVWLEPEGMDSDLIYPQGLSMTLPAELQEK 360
LNSHVKETTRGPRYCPSIESKVLRFPNRLHQVWLEPEGMDSDLIYPQGLSMTLPAELQEK
Sbjct: 301 LNSHVKETTRGPRYCPSIESKVLRFPNRLHQVWLEPEGMDSDLIYPQGLSMTLPAELQEK 360
Query: 361 MITCIRGLEKAKVIQPDGVLLLLPRMECNGAISAHHNLPLPGYGVQYDYLDPRQITPSLE 420
MITCIRGLEKAKVIQ PGYGVQYDYLDPRQITPSLE
Sbjct: 361 MITCIRGLEKAKVIQ-------------------------PGYGVQYDYLDPRQITPSLE 395
Query: 421 THLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLT 480
THLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLT
Sbjct: 396 THLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLT 455
Query: 481 TLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGI 540
TLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGI
Sbjct: 456 TLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGI 515
Query: 541 SVLKSIEFLSSKWKKLIPEASISTSRSLPVRALDVLKYEEVDMDSLAKAVPEPLKKYTKC 600
SVLKSIEFLSSKWKKLIPEASISTSRSLPVRALDVLKYEEVDMDSLAKAVPEPLKKYTKC
Sbjct: 516 SVLKSIEFLSSKWKKLIPEASISTSRSLPVRALDVLKYEEVDMDSLAKAVPEPLKKYTKC 575
Query: 601 RELAERLKIEATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKLHFS 660
RELAERLKIEATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKLHFS
Sbjct: 576 RELAERLKIEATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKLHFS 635
Query: 661 RPQTIGAASRIPGVTPAAIINLLRFVKTTQRRQSAMNESSKTDQYLCDADRLQEREL 717
RPQTIGAASRIPGVTPAAIINLLRFVKTTQRRQSAMNESSKTDQYLCDADRLQEREL
Sbjct: 636 RPQTIGAASRIPGVTPAAIINLLRFVKTTQRRQSAMNESSKTDQYLCDADRLQEREL 692
>gi|183227703 mitochondrial translation optimization 1 homolog
isoform c [Homo sapiens]
Length = 732
Score = 1349 bits (3491), Expect = 0.0
Identities = 692/757 (91%), Positives = 692/757 (91%), Gaps = 65/757 (8%)
Query: 1 MFYFRGCGRWVAVSFTKQQFPLARLSSDSAAPRTPHFDVIVIGGGHAGTEAATAAARCGS 60
MFYFRGCGRWVAVSFTKQQFPLARLSSDSAAPRTPHFDVIVIGGGHAGTEAATAAARCGS
Sbjct: 1 MFYFRGCGRWVAVSFTKQQFPLARLSSDSAAPRTPHFDVIVIGGGHAGTEAATAAARCGS 60
Query: 61 RTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGVHYKVLNRRKGP 120
RTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGVHYKVLNRRKGP
Sbjct: 61 RTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGVHYKVLNRRKGP 120
Query: 121 AVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVEDLILTEPEPEHTGKCRVSGVVLVD 180
AVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVEDLILTEPEPEHTGKCRVSGVVLVD
Sbjct: 121 AVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVEDLILTEPEPEHTGKCRVSGVVLVD 180
Query: 181 GSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGDQPSIGLAQTLEKLGFVVGRLKTGTP 240
GSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGDQPSIGLAQTLEKLGFVVGRLKTGTP
Sbjct: 181 GSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGDQPSIGLAQTLEKLGFVVGRLKTGTP 240
Query: 241 PRIAKESINFSILNKHIPDNPSIPFSFTNETVWIKPEDQLPCYLTHTNPRVDEIVLKNLH 300
PRIAKESINFSILNKHIPDNPSIPFSFTNETVWIKPEDQLPCYLTHTNPRVDEIVLKNLH
Sbjct: 241 PRIAKESINFSILNKHIPDNPSIPFSFTNETVWIKPEDQLPCYLTHTNPRVDEIVLKNLH 300
Query: 301 LNSHVKETTRGPRYCPSIESKVLRFPNRLHQVWLEPEGMDSDLIYPQGLSMTLPAELQEK 360
LNSHVKETTRGPRYCPSIESKVLRFPNRLHQVWLEPEGMDSDLIYPQGLSMTLPAELQEK
Sbjct: 301 LNSHVKETTRGPRYCPSIESKVLRFPNRLHQVWLEPEGMDSDLIYPQGLSMTLPAELQEK 360
Query: 361 MITCIRGLEKAKVIQPDGVLLLLPRMECNGAISAHHNLPLPGYGVQYDYLDPRQITPSLE 420
MITCIRGLEKAKVIQ PGYGVQYDYLDPRQITPSLE
Sbjct: 361 MITCIRGLEKAKVIQ-------------------------PGYGVQYDYLDPRQITPSLE 395
Query: 421 THLVQRLFFAGQINGTTGYEEAAA------------------------------------ 444
THLVQRLFFAGQINGTTGYEEAAA
Sbjct: 396 THLVQRLFFAGQINGTTGYEEAAAQTECCSVARLECSDMISQLQAILLPQPSLVAGTAGM 455
Query: 445 ----QGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFRLS 500
QGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFRLS
Sbjct: 456 HHNTQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFRLS 515
Query: 501 LRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGISVLKSIEFLSSKWKKLIPEA 560
LRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGISVLKSIEFLSSKWKKLIPEA
Sbjct: 516 LRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGISVLKSIEFLSSKWKKLIPEA 575
Query: 561 SISTSRSLPVRALDVLKYEEVDMDSLAKAVPEPLKKYTKCRELAERLKIEATYESVLFHQ 620
SISTSRSLPVRALDVLKYEEVDMDSLAKAVPEPLKKYTKCRELAERLKIEATYESVLFHQ
Sbjct: 576 SISTSRSLPVRALDVLKYEEVDMDSLAKAVPEPLKKYTKCRELAERLKIEATYESVLFHQ 635
Query: 621 LQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKLHFSRPQTIGAASRIPGVTPAAII 680
LQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKLHFSRPQTIGAASRIPGVTPAAII
Sbjct: 636 LQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKLHFSRPQTIGAASRIPGVTPAAII 695
Query: 681 NLLRFVKTTQRRQSAMNESSKTDQYLCDADRLQEREL 717
NLLRFVKTTQRRQSAMNESSKTDQYLCDADRLQEREL
Sbjct: 696 NLLRFVKTTQRRQSAMNESSKTDQYLCDADRLQEREL 732
>gi|223029405 zinc finger protein 619 isoform 3 [Homo sapiens]
Length = 567
Score = 38.5 bits (88), Expect = 0.022
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 379 VLLLLPRMECNGAISAHHNLPLPG 402
V LLLPR+ECNG I H NL LPG
Sbjct: 67 VSLLLPRLECNGVIFTHRNLCLPG 90
>gi|94680985 cyclin J-like [Homo sapiens]
Length = 435
Score = 38.1 bits (87), Expect = 0.029
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 377 DGVLLLLPRMECNGAISAHHNLPLPG 402
+GV LL PR++C+G ISAH NL LPG
Sbjct: 94 NGVSLLSPRLKCSGMISAHCNLHLPG 119
>gi|170932471 hypothetical protein LOC79703 [Homo sapiens]
Length = 677
Score = 38.1 bits (87), Expect = 0.029
Identities = 17/23 (73%), Positives = 19/23 (82%)
Query: 380 LLLLPRMECNGAISAHHNLPLPG 402
L LLPR EC+GA+SAH NL LPG
Sbjct: 109 LTLLPRPECSGAVSAHCNLHLPG 131
>gi|148277071 thioredoxin reductase 1 isoform 3 [Homo sapiens]
Length = 649
Score = 35.4 bits (80), Expect = 0.19
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 22 LARLSSDSAAPRTPHFDVIVIGGGHAGTEAATAAARCGSRTLLL 65
L +++ P++ +D+I+IGGG G AA AA+ G + ++L
Sbjct: 148 LLKMNGPEDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVL 191
>gi|148277065 thioredoxin reductase 1 isoform 1 [Homo sapiens]
Length = 551
Score = 35.4 bits (80), Expect = 0.19
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 22 LARLSSDSAAPRTPHFDVIVIGGGHAGTEAATAAARCGSRTLLL 65
L +++ P++ +D+I+IGGG G AA AA+ G + ++L
Sbjct: 50 LLKMNGPEDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVL 93
>gi|5454102 transforming, acidic coiled-coil containing protein 3
[Homo sapiens]
Length = 838
Score = 35.0 bits (79), Expect = 0.24
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Query: 573 LDVLKYEEVDMDSLAKAVPEPLKKY-TKCREL----AERLKIEATYESVLFHQLQEI--- 624
+D+L+Y + D+D++ KA E ++ ++C EL E KI +E V++ ++E+
Sbjct: 634 VDLLQYSQKDLDAVVKATQEENRELRSRCEELHGKNLELGKIMDRFEEVVYQAMEEVQKQ 693
Query: 625 KGVQQDEALQLPKDLDYLT 643
K + + E ++ K+ D LT
Sbjct: 694 KELSKAEIQKVLKEKDQLT 712
>gi|51243063 MAD2L1 binding protein isoform 1 [Homo sapiens]
Length = 306
Score = 33.9 bits (76), Expect = 0.54
Identities = 15/23 (65%), Positives = 16/23 (69%)
Query: 380 LLLLPRMECNGAISAHHNLPLPG 402
L L PR+E NG SAHHN LPG
Sbjct: 10 LTLSPRLEHNGMTSAHHNFRLPG 32
>gi|33519426 thioredoxin reductase 1 isoform 2 [Homo sapiens]
Length = 499
Score = 33.9 bits (76), Expect = 0.54
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 32 PRTPHFDVIVIGGGHAGTEAATAAARCGSRTLLL 65
P++ +D+I+IGGG G AA AA+ G + ++L
Sbjct: 8 PKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVL 41
>gi|33519430 thioredoxin reductase 1 isoform 2 [Homo sapiens]
Length = 499
Score = 33.9 bits (76), Expect = 0.54
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 32 PRTPHFDVIVIGGGHAGTEAATAAARCGSRTLLL 65
P++ +D+I+IGGG G AA AA+ G + ++L
Sbjct: 8 PKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVL 41
>gi|33519428 thioredoxin reductase 1 isoform 2 [Homo sapiens]
Length = 499
Score = 33.9 bits (76), Expect = 0.54
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 32 PRTPHFDVIVIGGGHAGTEAATAAARCGSRTLLL 65
P++ +D+I+IGGG G AA AA+ G + ++L
Sbjct: 8 PKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVL 41
>gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo
sapiens]
Length = 312
Score = 33.5 bits (75), Expect = 0.70
Identities = 14/18 (77%), Positives = 15/18 (83%)
Query: 385 RMECNGAISAHHNLPLPG 402
R+ECNG ISAH NL LPG
Sbjct: 49 RLECNGTISAHCNLHLPG 66
>gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo
sapiens]
Length = 341
Score = 33.5 bits (75), Expect = 0.70
Identities = 14/18 (77%), Positives = 15/18 (83%)
Query: 385 RMECNGAISAHHNLPLPG 402
R+ECNG ISAH NL LPG
Sbjct: 49 RLECNGTISAHCNLHLPG 66
>gi|229577391 pyridine nucleotide-disulphide oxidoreductase domain
2 [Homo sapiens]
Length = 581
Score = 33.1 bits (74), Expect = 0.92
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 8 GRWVAVSFTKQQFPLARLSSDSA-APRTPHFDVIVIGGGHAGTEAATAAARCGSRTLLLT 66
GR + + FP R + A P +D +VIG GH G AA R G T +
Sbjct: 5 GRGLCKAVAASPFPAWRRDNTEARGGLKPEYDAVVIGAGHNGLVAAAYLQRLGVNTAVFE 64
Query: 67 HR 68
R
Sbjct: 65 RR 66
>gi|6005810 mitogen-activated protein kinase kinase kinase kinase 1
isoform 2 [Homo sapiens]
Length = 833
Score = 32.7 bits (73), Expect = 1.2
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 380 LLLLPRMECNGAISAHHNLPLPG 402
LL PR+EC+G IS H NL LPG
Sbjct: 794 LLGSPRLECSGTISPHCNLLLPG 816
>gi|23943928 hypothetical protein LOC140680 [Homo sapiens]
Length = 363
Score = 32.7 bits (73), Expect = 1.2
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 43/143 (30%)
Query: 532 MKSSLEEGISVLKSIE----FLSSKWKKLIPEAS-ISTSRSLPVRAL-----------DV 575
MK+SL G + L+ + FLS ++LI + S +L VRAL D+
Sbjct: 101 MKTSLRSGRAALRELRSRENFLSKLNRELIETIQEMENSTTLHVRALLQQQDTLATIIDI 160
Query: 576 LKYEEVDMDSLAKAVPEPLKKYTKCR-----ELAERL--KIEATYESV------------ 616
L+Y K+ + ++ KC+ + AE+L KIE T E V
Sbjct: 161 LEYSNKKRLQQLKSELQEWEEKKKCKMSYLEQQAEQLNAKIEKTQEEVNFLSTYMDHEYS 220
Query: 617 --------LFHQLQEIKGVQQDE 631
L QLQ++K QQDE
Sbjct: 221 IKSVQISTLMRQLQQVKDSQQDE 243
>gi|30581135 structural maintenance of chromosomes 1A [Homo sapiens]
Length = 1233
Score = 32.3 bits (72), Expect = 1.6
Identities = 37/158 (23%), Positives = 77/158 (48%), Gaps = 20/158 (12%)
Query: 522 SQQRYERACWMKSSLEEGISVLKSIEFLSSKWKKLIPEASISTSRSLPVRALDVLKYEEV 581
+Q+ Y++ K ++E + S+E ++++ + E S S R L + V KY +
Sbjct: 322 AQKHYKKR---KGDMDELEKEMLSVEKARQEFEERMEEESQSQGRDLTLEENQVKKYHRL 378
Query: 582 DMDSLAKA--VPEPLKKYTKCR-------ELAERLKIEATYESVLFHQLQEIKGVQQDEA 632
++ +A + + L+K+ + + +L ER K+E E+ + +L+EI+ Q+
Sbjct: 379 KEEASKRAATLAQELEKFNRDQKADQDRLDLEERKKVET--EAKIKQKLREIEENQK--- 433
Query: 633 LQLPKDLDYLTIRDVSLSHEVREKLHFSRPQTIGAASR 670
++ K +Y+T SL E ++KL + + A R
Sbjct: 434 -RIEKLEEYITTSKQSL--EEQKKLEGELTEEVEMAKR 468
>gi|60099474 tripartite motif-containing 61 [Homo sapiens]
Length = 209
Score = 32.3 bits (72), Expect = 1.6
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 356 ELQEKMITCI--RGLEKAKVIQPDGVLLLLPRMECNGAISAHHNLPLPG 402
EL EK+IT + LE K ++ V R+EC+ ISAH NL LPG
Sbjct: 156 ELIEKVITMQTRKSLELKKKMESPSVT----RLECSCTISAHFNLRLPG 200
>gi|203098013 all-trans-13,14-dihydroretinol saturase [Homo sapiens]
Length = 610
Score = 32.3 bits (72), Expect = 1.6
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 38 DVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIG 85
DV+VIG G G AA A+ G R L+L G C +FG G
Sbjct: 69 DVVVIGSGFGGLAAAAILAKAGKRVLVLEQHTKAGG---CCHTFGKNG 113
>gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens]
Length = 135
Score = 32.0 bits (71), Expect = 2.0
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 380 LLLLPRMECNGAISAHHNLPLPG 402
L LLPR+EC+G I AH NL L G
Sbjct: 104 LALLPRLECSGVILAHCNLCLLG 126
>gi|8923708 FAD-dependent oxidoreductase domain containing 1 [Homo
sapiens]
Length = 486
Score = 32.0 bits (71), Expect = 2.0
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 25 LSSDSAAPRTPHFDVIVIGGGHAGTEAA----TAAARCGSRTLLLTHRVDTIGQMSCNPS 80
L D++ H DV+++GGG G A +R G+ +L+ R T Q S S
Sbjct: 52 LLQDTSHLPPEHSDVVIVGGGVLGLSVAYWLKKLESRRGAIRVLVVERDHTYSQASTGLS 111
Query: 81 FGGI 84
GGI
Sbjct: 112 VGGI 115
>gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1
[Homo sapiens]
Length = 759
Score = 31.6 bits (70), Expect = 2.7
Identities = 13/18 (72%), Positives = 16/18 (88%)
Query: 384 PRMECNGAISAHHNLPLP 401
PR+EC+GAISAH +L LP
Sbjct: 7 PRLECSGAISAHCSLHLP 24
>gi|119943098 dihydropyrimidine dehydrogenase isoform 1 [Homo
sapiens]
Length = 1025
Score = 31.6 bits (70), Expect = 2.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 39 VIVIGGGHAGTEAATAAARCGSRTLLLTHR 68
VIV+G G + AT+A RCG+R + + R
Sbjct: 335 VIVLGAGDTAFDCATSALRCGARRVFIVFR 364
>gi|66348062 fumarylacetoacetate hydrolase domain containing 1
isoform 1 [Homo sapiens]
Length = 248
Score = 31.6 bits (70), Expect = 2.7
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 380 LLLLPRMECNGAISAHHNLPLPG 402
L L P++EC+ AI+AH +L LPG
Sbjct: 216 LTLSPKLECSSAITAHCSLELPG 238
>gi|148839316 NIMA-related kinase 4 [Homo sapiens]
Length = 841
Score = 31.2 bits (69), Expect = 3.5
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 369 EKAKVIQP--------DGVLLLLPRMECNGAISAHHNLPLPG 402
E K +QP D L L P++EC+G I AH NL L G
Sbjct: 439 EPVKPLQPLIKEQKPKDQSLALSPKLECSGTILAHSNLRLLG 480
>gi|133908616 glycerol-3-phosphate dehydrogenase 2, mitochondrial
[Homo sapiens]
Length = 727
Score = 31.2 bits (69), Expect = 3.5
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 34 TPHFDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREV 93
T FD++VIGGG G+ A A G +T L+ + G S + G +L + +
Sbjct: 67 TSEFDILVIGGGATGSGCALDAVTRGLKTALVERDDFSSGTSSRSTKLIHGGVRYLQKAI 126
Query: 94 DALD 97
LD
Sbjct: 127 MKLD 130
>gi|133908614 glycerol-3-phosphate dehydrogenase 2, mitochondrial
[Homo sapiens]
Length = 727
Score = 31.2 bits (69), Expect = 3.5
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 34 TPHFDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREV 93
T FD++VIGGG G+ A A G +T L+ + G S + G +L + +
Sbjct: 67 TSEFDILVIGGGATGSGCALDAVTRGLKTALVERDDFSSGTSSRSTKLIHGGVRYLQKAI 126
Query: 94 DALD 97
LD
Sbjct: 127 MKLD 130
>gi|62543567 nudix (nucleoside diphosphate linked moiety X)-type
motif 17 [Homo sapiens]
Length = 328
Score = 31.2 bits (69), Expect = 3.5
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 18 QQFPLARLSSDSAAPRTPHFDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSC 77
Q+ P ++ PR P ++ G G ++ +T+LLT R T+ S
Sbjct: 64 QRPPFCPFAALEERPRVPGAELPTDRGVDLGVAVILQSS---DKTVLLTRRARTL---SV 117
Query: 78 NPSFGGIGKGHLMREVDALDGLCSRICDQSGVH 110
+P+ GH+ E + LDG + ++SG+H
Sbjct: 118 SPNLWVPPGGHVELEEELLDGGLRELWEESGLH 150
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,352,494
Number of Sequences: 37866
Number of extensions: 1228708
Number of successful extensions: 2656
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2620
Number of HSP's gapped (non-prelim): 49
length of query: 717
length of database: 18,247,518
effective HSP length: 110
effective length of query: 607
effective length of database: 14,082,258
effective search space: 8547930606
effective search space used: 8547930606
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.