Guide to the Human Genome
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Name: NUDT17 Sequence: fasta or formatted (328aa) NCBI GI: 62543567
Description:

nudix (nucleoside diphosphate linked moiety X)-type motif 17

Referenced in:

Nucleotide Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         26           3
 C cysteine            1.2          4           1
 D aspartate           3.4         11           1
 E glutamate           7.3         24           3
 F phenylalanine       1.8          6           1
 G glycine             7.9         26           2
 H histidine           2.1          7           2
 I isoleucine          1.8          6           1
 K lysine              2.7          9           1
 L leucine            15.5         51           3
 M methionine          1.8          6           1
 N asparagine          1.5          5           1
 P proline            11.3         37           3
 Q glutamine           4.3         14           3
 R arginine            7.0         23           2
 S serine              7.3         24           2
 T threonine           4.0         13           1
 V valine              7.0         23           1
 W tryptophan          2.7          9           1
 Y tyrosine            1.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nudix (nucleoside diphosphate linked moiety X)-type ... 
NUDT15                0.029   nudix-type motif 15 
NUDT10                0.022   nudix-type motif 10 
NUDT3                 0.019   nudix-type motif 3 
NUDT6                 0.019   nudix-type motif 6 isoform a 
NUDT4                 0.019   nudix-type motif 4 isoform alpha 
NUDT4                 0.017   nudix-type motif 4 isoform beta 
NUDT18                0.017   nudix (nucleoside diphosphate linked moiety X)-type...
NUDT11                0.017   nudix-type motif 11 
NUDT2                 0.015   nudix-type motif 2 
NUDT2                 0.015   nudix-type motif 2 
NUDT2                 0.015   nudix-type motif 2 
NUDT22                0.014   nudix (nucleoside diphosphate linked moiety X)-type...
NUDT22                0.014   nudix (nucleoside diphosphate linked moiety X)-type ...
KIF3C                 0.014   kinesin family member 3C 
NUDT22                0.011   nudix (nucleoside diphosphate linked moiety X)-type...
LOC100292466          0.011   PREDICTED: hypothetical protein 
LOC100289816          0.011   PREDICTED: hypothetical protein XP_002347235 
LOC100289633          0.011   PREDICTED: hypothetical protein XP_002343096 
PIGQ                  0.011   phosphatidylinositol glycan anchor biosynthesis, cla...
NUDT6                 0.009   nudix-type motif 6 isoform b 
MTO1                  0.009   mitochondrial translation optimization 1 homolog is...
MTO1                  0.009   mitochondrial translation optimization 1 homolog iso...
MTO1                  0.009   mitochondrial translation optimization 1 homolog iso...
CRTC1                 0.009   mucoepidermoid carcinoma translocated 1 isoform 3 [...
CRTC1                 0.009   mucoepidermoid carcinoma translocated 1 isoform 1 [...
LOC100293814          0.009   PREDICTED: hypothetical protein 
LOC100288238          0.009   PREDICTED: hypothetical protein 
LOC100288238          0.009   PREDICTED: hypothetical protein XP_002342947 
NUDT1                 0.008   nudix-type motif 1 isoform p22 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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