Guide to the Human Genome
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Name: FOXRED1 Sequence: fasta or formatted (486aa) NCBI GI: 8923708
Description:

FAD-dependent oxidoreductase domain containing 1

Referenced in:

Additional Enzymes and Related Sequences

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         33           3
 C cysteine            1.2          6           1
 D aspartate           4.7         23           2
 E glutamate           5.8         28           2
 F phenylalanine       4.1         20           2
 G glycine             9.7         47           3
 H histidine           2.3         11           1
 I isoleucine          3.9         19           2
 K lysine              4.3         21           3
 L leucine            10.7         52           3
 M methionine          1.9          9           1
 N asparagine          3.1         15           2
 P proline             6.0         29           2
 Q glutamine           4.9         24           2
 R arginine            6.4         31           2
 S serine              6.8         33           3
 T threonine           3.9         19           2
 V valine              8.6         42           2
 W tryptophan          1.9          9           1
 Y tyrosine            3.1         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   FAD-dependent oxidoreductase domain containing 1 [Hom... 
DMGDH                 0.040   dimethylglycine dehydrogenase precursor 
SARDH                 0.036   sarcosine dehydrogenase precursor 
SARDH                 0.036   sarcosine dehydrogenase precursor 
PDPR                  0.033   pyruvate dehydrogenase phosphatase regulatory subun...
PIPOX                 0.030   pipecolic acid oxidase 
L2HGDH                0.011   L-2-hydroxyglutarate dehydrogenase precursor 
ETFDH                 0.008   electron-transferring-flavoprotein dehydrogenase pr...
MTO1                  0.007   mitochondrial translation optimization 1 homolog is...
MTO1                  0.007   mitochondrial translation optimization 1 homolog iso...
MTO1                  0.007   mitochondrial translation optimization 1 homolog iso...
F5                    0.007   coagulation factor V precursor 
ADAMTS1               0.005   ADAM metallopeptidase with thrombospondin type 1 mot...
RETSAT                0.005   all-trans-13,14-dihydroretinol saturase 
SQRDL                 0.005   sulfide dehydrogenase like 
CSDA                  0.004   cold shock domain protein A isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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