Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 197313674
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|197313674 carnitine deficiency-associated gene expressed in
ventricle 3 isoform c [Homo sapiens]
(110 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|197313674 carnitine deficiency-associated gene expressed in v... 233 2e-62
gi|197313672 carnitine deficiency-associated gene expressed in v... 227 1e-60
gi|8923710 carnitine deficiency-associated gene expressed in ven... 227 2e-60
gi|226051634 zinc finger protein 414 isoform 1 [Homo sapiens] 38 0.002
gi|226051591 zinc finger protein 414 isoform 2 [Homo sapiens] 38 0.002
gi|40788007 FYN binding protein (FYB-120/130) isoform 2 [Homo sa... 35 0.013
gi|42476118 FYN binding protein (FYB-120/130) isoform 1 [Homo sa... 35 0.013
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 35 0.017
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 34 0.029
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 34 0.029
gi|31542255 hypothetical protein LOC140706 [Homo sapiens] 33 0.038
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 33 0.049
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 33 0.049
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 33 0.049
gi|10937869 survival of motor neuron 2, centromeric isoform d [H... 33 0.064
gi|13259527 survival of motor neuron 2, centromeric isoform a [H... 33 0.064
gi|4507091 survival of motor neuron 1, telomeric isoform d [Homo... 33 0.064
gi|113425957 PREDICTED: hypothetical protein [Homo sapiens] 32 0.084
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 32 0.084
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 32 0.084
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 32 0.084
gi|33356170 myosin IXB isoform 1 [Homo sapiens] 32 0.084
gi|4506411 Ran GTPase activating protein 1 [Homo sapiens] 32 0.084
gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Hom... 32 0.084
gi|40217820 slit and trk like 3 protein [Homo sapiens] 32 0.084
gi|6912492 mitogen-activated protein kinase 8 interacting protei... 32 0.084
gi|7706537 mitogen-activated protein kinase 8 interacting protei... 32 0.084
gi|13259529 survival of motor neuron 2, centromeric isoform b [H... 32 0.11
gi|13259531 survival of motor neuron 2, centromeric isoform c [H... 32 0.11
gi|13259512 survival of motor neuron 1, telomeric isoform b [Hom... 32 0.11
>gi|197313674 carnitine deficiency-associated gene expressed in
ventricle 3 isoform c [Homo sapiens]
Length = 110
Score = 233 bits (594), Expect = 2e-62
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MQISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEP 60
MQISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEP
Sbjct: 1 MQISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEP 60
Query: 61 AMTSGVYRPPGARLTTTRKTPQGPPEIYSDTQFPSLQSTAKHVESRKYLK 110
AMTSGVYRPPGARLTTTRKTPQGPPEIYSDTQFPSLQSTAKHVESRKYLK
Sbjct: 61 AMTSGVYRPPGARLTTTRKTPQGPPEIYSDTQFPSLQSTAKHVESRKYLK 110
>gi|197313672 carnitine deficiency-associated gene expressed in
ventricle 3 isoform a [Homo sapiens]
Length = 213
Score = 227 bits (579), Expect = 1e-60
Identities = 109/111 (98%), Positives = 110/111 (99%), Gaps = 1/111 (0%)
Query: 1 MQISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEP 60
MQISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEP
Sbjct: 103 MQISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEP 162
Query: 61 AMTSGVYRPPGARLTTTRKTPQGPPEIYSDTQFPSLQSTAKHVESR-KYLK 110
AMTSGVYRPPGARLTTTRKTPQGPPEIYSDTQFPSLQSTAKHVESR +YLK
Sbjct: 163 AMTSGVYRPPGARLTTTRKTPQGPPEIYSDTQFPSLQSTAKHVESRNRYLK 213
>gi|8923710 carnitine deficiency-associated gene expressed in
ventricle 3 isoform b [Homo sapiens]
Length = 258
Score = 227 bits (578), Expect = 2e-60
Identities = 107/107 (100%), Positives = 107/107 (100%)
Query: 1 MQISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEP 60
MQISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEP
Sbjct: 103 MQISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEP 162
Query: 61 AMTSGVYRPPGARLTTTRKTPQGPPEIYSDTQFPSLQSTAKHVESRK 107
AMTSGVYRPPGARLTTTRKTPQGPPEIYSDTQFPSLQSTAKHVESRK
Sbjct: 163 AMTSGVYRPPGARLTTTRKTPQGPPEIYSDTQFPSLQSTAKHVESRK 209
>gi|226051634 zinc finger protein 414 isoform 1 [Homo sapiens]
Length = 390
Score = 38.1 bits (87), Expect = 0.002
Identities = 35/108 (32%), Positives = 46/108 (42%), Gaps = 20/108 (18%)
Query: 4 SSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMT 63
SS EE E+ P WE GG GGM++ S P AP P P P P +T
Sbjct: 39 SSMSEEPGPEQAATP-PVWERGGA--GGMQQGSSP----APDSCQPGP-----GPSPGLT 86
Query: 64 SGV------YRPPGARLTTTRKTPQGPPEIYSDTQFPSLQSTAKHVES 105
S V RPP R ++ P P FPS++ A+H+ +
Sbjct: 87 SIVSGTSEDLRPPRRRPPPGKQIPCSSPGCC--LSFPSVRDLAQHLRT 132
>gi|226051591 zinc finger protein 414 isoform 2 [Homo sapiens]
Length = 312
Score = 38.1 bits (87), Expect = 0.002
Identities = 35/108 (32%), Positives = 46/108 (42%), Gaps = 20/108 (18%)
Query: 4 SSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMT 63
SS EE E+ P WE GG GGM++ S P AP P P P P +T
Sbjct: 39 SSMSEEPGPEQAATP-PVWERGGA--GGMQQGSSP----APDSCQPGP-----GPSPGLT 86
Query: 64 SGV------YRPPGARLTTTRKTPQGPPEIYSDTQFPSLQSTAKHVES 105
S V RPP R ++ P P FPS++ A+H+ +
Sbjct: 87 SIVSGTSEDLRPPRRRPPPGKQIPCSSPGCC--LSFPSVRDLAQHLRT 132
>gi|40788007 FYN binding protein (FYB-120/130) isoform 2 [Homo
sapiens]
Length = 783
Score = 35.0 bits (79), Expect = 0.013
Identities = 21/59 (35%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 25 GGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMTSGVYRPPGARLTTTRKTPQG 83
GG G EK G N P Q P P+ P P RPP LT KT G
Sbjct: 323 GGPWGQSQEKEKGDKNSATPKQKPLPPLFTLGPPPPKPN----RPPNVDLTKFHKTSSG 377
>gi|42476118 FYN binding protein (FYB-120/130) isoform 1 [Homo
sapiens]
Length = 829
Score = 35.0 bits (79), Expect = 0.013
Identities = 21/59 (35%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 25 GGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMTSGVYRPPGARLTTTRKTPQG 83
GG G EK G N P Q P P+ P P RPP LT KT G
Sbjct: 323 GGPWGQSQEKEKGDKNSATPKQKPLPPLFTLGPPPPKPN----RPPNVDLTKFHKTSSG 377
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 34.7 bits (78), Expect = 0.017
Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 18 PGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMTSGVYRPPGARLTTT 77
PG N E GG GG G + G +T P Q PP P P G PPG +
Sbjct: 590 PGKNGERGGPGGPGPQGPPGKNGETGP-QGPPGPT------GPGGDKGDTGPPGPQGLQG 642
Query: 78 RKTPQGPP 85
GPP
Sbjct: 643 LPGTGGPP 650
Score = 30.8 bits (68), Expect = 0.24
Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 19 GDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMTSGVYRPPGARLTTTR 78
GD E GG G G+ GP T P+ PP P G+ G R +
Sbjct: 741 GDKGEPGGPGADGVPGKDGPRGPTGPI-GPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGE 799
Query: 79 KTPQGPP 85
+ GPP
Sbjct: 800 RGETGPP 806
Score = 26.6 bits (57), Expect = 4.6
Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 18 PGDNWEEGGGGGGGMEKSSGPWNKTAP-----VQAPPAPVIVTETPEPAMTSGVYRPPGA 72
PG E G G G + G + P Q PP P + +P G PGA
Sbjct: 347 PGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGA 406
Query: 73 RLTTTRKTPQGP 84
+ P GP
Sbjct: 407 PGLMGARGPPGP 418
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 33.9 bits (76), Expect = 0.029
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 18 PGDNWEEGGGGGGGMEKSSGPWNK------TAPVQAPPAPVIVTETPEPAMTSGVYRPPG 71
PG+ E+G G G + SSGP + + P+ PP P + P P G P G
Sbjct: 1494 PGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPI-GPPGPPGLPGPPGPKGAKGSSGPTG 1552
Query: 72 ARLTTTRKTPQGPP 85
+ P GPP
Sbjct: 1553 PKGEAGHPGPPGPP 1566
Score = 31.2 bits (69), Expect = 0.19
Identities = 23/67 (34%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 18 PGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMTSGVYRPPGARLTTT 77
PG N E+GG G G G T P + P +T P P SG P G
Sbjct: 891 PGANGEKGGRGTPGKPGPRGQRGPTGP-RGERGPRGITGKPGPKGNSGGDGPAGPPGERG 949
Query: 78 RKTPQGP 84
PQGP
Sbjct: 950 PNGPQGP 956
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 19 GDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMTSGVYRPPGARLTTTR 78
G E+G G G+E GP KT P+ AP P P G+ P G +
Sbjct: 1402 GRQGEKGAKGEAGLE---GPPGKTGPIGPQGAP----GKPGPDGLRGIPGPVGEQGLPGS 1454
Query: 79 KTPQGPPEIYSDTQFPSLQ 97
P GPP P L+
Sbjct: 1455 PGPDGPPGPMGPPGLPGLK 1473
Score = 28.5 bits (62), Expect = 1.2
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 11/75 (14%)
Query: 18 PGDNWEEGGGGGGGMEKSSGPWNKTAPVQAP----PA----PVIVTETPEPAMTSGVYRP 69
PGD G G G++ + GP P +P PA P+ + P P G P
Sbjct: 1059 PGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPG---P 1115
Query: 70 PGARLTTTRKTPQGP 84
G + K PQGP
Sbjct: 1116 AGEKGAPGEKGPQGP 1130
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 18 PGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMTS--GVYRPPGARLT 75
PGD+ +G G G GP + P P + EP T G PG
Sbjct: 1329 PGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGP 1388
Query: 76 TTRKTPQGP 84
++ P GP
Sbjct: 1389 PGKRGPPGP 1397
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 33.9 bits (76), Expect = 0.029
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 4 SSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMT 63
S + + + + P GGGGGGG S P +PV P+PV P PA
Sbjct: 1168 SGRSSQGSSTEAEPPTQPEPTGGGGGGGSSPSPAP--AMSPVPPSPSPV-----PTPASP 1220
Query: 64 SG 65
SG
Sbjct: 1221 SG 1222
>gi|31542255 hypothetical protein LOC140706 [Homo sapiens]
Length = 433
Score = 33.5 bits (75), Expect = 0.038
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 13 EKRQDPGDNWEE---GGGGGGGMEKSSGPWNK 41
E+RQ +WE GGGGGGG K G W +
Sbjct: 238 ERRQTFSGSWERRHGGGGGGGGAGKPGGSWER 269
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 33.1 bits (74), Expect = 0.049
Identities = 32/97 (32%), Positives = 39/97 (40%), Gaps = 18/97 (18%)
Query: 1 MQISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSS--GPWNKTAPVQAPPAPVIVTETP 58
+Q+ +E + + + R D G E G GGGG SS GP P P P P
Sbjct: 1317 LQLEAEMKGEKGD-RGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIP-----GP 1370
Query: 59 EPAMTSGVYRPPGARLTTTRKTPQGPPEI-YSDTQFP 94
+ G PPG PQGPP I Y Q P
Sbjct: 1371 KGESIRGQPGPPG---------PQGPPGIGYEGRQGP 1398
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/72 (30%), Positives = 25/72 (34%), Gaps = 10/72 (13%)
Query: 24 EGGGGGGGMEKSSGPWNKTAPVQAPPAP----------VIVTETPEPAMTSGVYRPPGAR 73
EG G GG +E GP P P P V ++ P PA GV G
Sbjct: 887 EGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPP 946
Query: 74 LTTTRKTPQGPP 85
P GPP
Sbjct: 947 GFPGLPGPPGPP 958
Score = 26.2 bits (56), Expect = 6.0
Identities = 24/71 (33%), Positives = 26/71 (36%), Gaps = 10/71 (14%)
Query: 13 EKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMTSGVYRPPGA 72
E RQ P G G G GP +T V PP P P P T G G
Sbjct: 1393 EGRQGP-----PGPPGPPGPPSFPGPHRQTISVPGPPGP---PGPPGPPGTMGA--SSGV 1442
Query: 73 RLTTTRKTPQG 83
RL TR+ G
Sbjct: 1443 RLWATRQAMLG 1453
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 33.1 bits (74), Expect = 0.049
Identities = 32/97 (32%), Positives = 39/97 (40%), Gaps = 18/97 (18%)
Query: 1 MQISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSS--GPWNKTAPVQAPPAPVIVTETP 58
+Q+ +E + + + R D G E G GGGG SS GP P P P P
Sbjct: 902 LQLEAEMKGEKGD-RGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIP-----GP 955
Query: 59 EPAMTSGVYRPPGARLTTTRKTPQGPPEI-YSDTQFP 94
+ G PPG PQGPP I Y Q P
Sbjct: 956 KGESIRGQPGPPG---------PQGPPGIGYEGRQGP 983
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/72 (30%), Positives = 25/72 (34%), Gaps = 10/72 (13%)
Query: 24 EGGGGGGGMEKSSGPWNKTAPVQAPPAP----------VIVTETPEPAMTSGVYRPPGAR 73
EG G GG +E GP P P P V ++ P PA GV G
Sbjct: 472 EGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPP 531
Query: 74 LTTTRKTPQGPP 85
P GPP
Sbjct: 532 GFPGLPGPPGPP 543
Score = 26.2 bits (56), Expect = 6.0
Identities = 24/71 (33%), Positives = 26/71 (36%), Gaps = 10/71 (14%)
Query: 13 EKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMTSGVYRPPGA 72
E RQ P G G G GP +T V PP P P P T G G
Sbjct: 978 EGRQGP-----PGPPGPPGPPSFPGPHRQTISVPGPPGP---PGPPGPPGTMGA--SSGV 1027
Query: 73 RLTTTRKTPQG 83
RL TR+ G
Sbjct: 1028 RLWATRQAMLG 1038
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 33.1 bits (74), Expect = 0.049
Identities = 32/97 (32%), Positives = 39/97 (40%), Gaps = 18/97 (18%)
Query: 1 MQISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSS--GPWNKTAPVQAPPAPVIVTETP 58
+Q+ +E + + + R D G E G GGGG SS GP P P P P
Sbjct: 1082 LQLEAEMKGEKGD-RGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIP-----GP 1135
Query: 59 EPAMTSGVYRPPGARLTTTRKTPQGPPEI-YSDTQFP 94
+ G PPG PQGPP I Y Q P
Sbjct: 1136 KGESIRGQPGPPG---------PQGPPGIGYEGRQGP 1163
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/72 (30%), Positives = 25/72 (34%), Gaps = 10/72 (13%)
Query: 24 EGGGGGGGMEKSSGPWNKTAPVQAPPAP----------VIVTETPEPAMTSGVYRPPGAR 73
EG G GG +E GP P P P V ++ P PA GV G
Sbjct: 652 EGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPP 711
Query: 74 LTTTRKTPQGPP 85
P GPP
Sbjct: 712 GFPGLPGPPGPP 723
Score = 26.2 bits (56), Expect = 6.0
Identities = 24/71 (33%), Positives = 26/71 (36%), Gaps = 10/71 (14%)
Query: 13 EKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMTSGVYRPPGA 72
E RQ P G G G GP +T V PP P P P T G G
Sbjct: 1158 EGRQGP-----PGPPGPPGPPSFPGPHRQTISVPGPPGP---PGPPGPPGTMGA--SSGV 1207
Query: 73 RLTTTRKTPQG 83
RL TR+ G
Sbjct: 1208 RLWATRQAMLG 1218
>gi|10937869 survival of motor neuron 2, centromeric isoform d [Homo
sapiens]
Length = 294
Score = 32.7 bits (73), Expect = 0.064
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 4 SSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMT 63
++++ E++++ D +N G ++ S PWN P PP P+ P P +
Sbjct: 155 NAQENENESQVSTDESENSRSPGNKSDNIKPKSAPWNSFLP---PPPPM-----PGPRLG 206
Query: 64 SGVYRPPGARLTTTRKTPQGPP 85
G PG + P PP
Sbjct: 207 PG---KPGLKFNGPPPPPPPPP 225
>gi|13259527 survival of motor neuron 2, centromeric isoform a [Homo
sapiens]
Length = 282
Score = 32.7 bits (73), Expect = 0.064
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 4 SSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMT 63
++++ E++++ D +N G ++ S PWN P PP P+ P P +
Sbjct: 155 NAQENENESQVSTDESENSRSPGNKSDNIKPKSAPWNSFLP---PPPPM-----PGPRLG 206
Query: 64 SGVYRPPGARLTTTRKTPQGPP 85
G PG + P PP
Sbjct: 207 PG---KPGLKFNGPPPPPPPPP 225
>gi|4507091 survival of motor neuron 1, telomeric isoform d [Homo
sapiens]
Length = 294
Score = 32.7 bits (73), Expect = 0.064
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 4 SSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMT 63
++++ E++++ D +N G ++ S PWN P PP P+ P P +
Sbjct: 155 NAQENENESQVSTDESENSRSPGNKSDNIKPKSAPWNSFLP---PPPPM-----PGPRLG 206
Query: 64 SGVYRPPGARLTTTRKTPQGPP 85
G PG + P PP
Sbjct: 207 PG---KPGLKFNGPPPPPPPPP 225
>gi|113425957 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 32.3 bits (72), Expect = 0.084
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 6 EKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQA---PPAPVIVTETPEPAM 62
++E D E Q PG + G GGGG + +AP PPAP P A
Sbjct: 46 QEEPQDTENAQSPGSPRQARGPGGGGNPGDTVLTPLSAPADPNTHPPAPGTQPALPPLAR 105
Query: 63 TSGVYRPPGARLTTTRKTPQGP 84
V G+RL R+ +GP
Sbjct: 106 PCRVSTLCGSRL-GRRRAGEGP 126
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 32.3 bits (72), Expect = 0.084
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 13/68 (19%)
Query: 18 PGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMTSGVYRPPGARLTTT 77
PG+ G GG G++ + GP PP P A + G PPG
Sbjct: 901 PGERGLPGTAGGPGLKGNEGP-------SGPPGPAGSPGERGAAGSGGPIGPPG------ 947
Query: 78 RKTPQGPP 85
R PQGPP
Sbjct: 948 RPGPQGPP 955
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 19 GDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTE 56
GD E G G G + GP +T P P P ++ E
Sbjct: 668 GDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGE 705
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 32.3 bits (72), Expect = 0.084
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 13/68 (19%)
Query: 18 PGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMTSGVYRPPGARLTTT 77
PG+ G GG G++ + GP PP P A + G PPG
Sbjct: 880 PGERGLPGTAGGPGLKGNEGP-------SGPPGPAGSPGERGAAGSGGPIGPPG------ 926
Query: 78 RKTPQGPP 85
R PQGPP
Sbjct: 927 RPGPQGPP 934
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 19 GDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTE 56
GD E G G G + GP +T P P P ++ E
Sbjct: 647 GDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGE 684
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 32.3 bits (72), Expect = 0.084
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 13/68 (19%)
Query: 18 PGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMTSGVYRPPGARLTTT 77
PG+ G GG G++ + GP PP P A + G PPG
Sbjct: 987 PGERGLPGTAGGPGLKGNEGP-------SGPPGPAGSPGERGAAGSGGPIGPPG------ 1033
Query: 78 RKTPQGPP 85
R PQGPP
Sbjct: 1034 RPGPQGPP 1041
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 19 GDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTE 56
GD E G G G + GP +T P P P ++ E
Sbjct: 754 GDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGE 791
>gi|33356170 myosin IXB isoform 1 [Homo sapiens]
Length = 2157
Score = 32.3 bits (72), Expect = 0.084
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 5 SEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMTS 64
S++E D+E EE G G S GP P A P P T +P P + +
Sbjct: 1992 SDEENLDSETSASTESLLEERAGRGA----SEGP-----PAPALPCPGAPTPSPLPTVAA 2042
Query: 65 GVYRPPGARLTTTRKTPQGPP 85
R P + +T KTP+ P
Sbjct: 2043 PPRRRPSSFVTVRVKTPRRTP 2063
>gi|4506411 Ran GTPase activating protein 1 [Homo sapiens]
Length = 587
Score = 32.3 bits (72), Expect = 0.084
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 2 QISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTA-PVQAPPAPVIVTETPEP 60
+ E+EED+ E+ ++ + EE G G EKS+ P K P PAPV+ + P
Sbjct: 375 EAEEEEEEDEEEEEEEEEEEEEEPQQRGQG-EKSATPSRKILDPNTGEPAPVLSSPPPAD 433
Query: 61 AMTSGVYRPP 70
T + P
Sbjct: 434 VSTFLAFPSP 443
>gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Homo
sapiens]
Length = 999
Score = 32.3 bits (72), Expect = 0.084
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 27 GGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMTSGVYRPPGARLTTTRKTPQGPPE 86
GGGGG ++ GP +TA +P P V PA SG G+R + +K Q
Sbjct: 37 GGGGG--RAGGPERRTADTPSPSPPPPVGTGNAPARGSGA----GSRWSGFKKRKQVLDR 90
Query: 87 IYSDTQ 92
++S +Q
Sbjct: 91 VFSSSQ 96
>gi|40217820 slit and trk like 3 protein [Homo sapiens]
Length = 977
Score = 32.3 bits (72), Expect = 0.084
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 22 WEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPA---MTSGVYRP 69
+E+GGGGGGG P ++P +APP + P P + +Y+P
Sbjct: 709 FEDGGGGGGGSGGGGRP-TLSSPEKAPPVGHVYEYIPHPVTQMCNNPIYKP 758
>gi|6912492 mitogen-activated protein kinase 8 interacting protein 2
isoform 1 [Homo sapiens]
Length = 824
Score = 32.3 bits (72), Expect = 0.084
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 10 DDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMTSGVYRP 69
DDNE+ D + EE G G + G AP P P E P +RP
Sbjct: 85 DDNEEEDDEDEEEEEEEEEGDGEGQEGGDPGSEAPAPGPLIPSPSVEEPHK------HRP 138
Query: 70 PGARLTT 76
RLTT
Sbjct: 139 TTLRLTT 145
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 6 EKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAP 48
+ E+++ E+ ++ GD + GG G + GP + V+ P
Sbjct: 91 DDEDEEEEEEEEEGDGEGQEGGDPGSEAPAPGPLIPSPSVEEP 133
>gi|7706537 mitogen-activated protein kinase 8 interacting protein 2
isoform 2 [Homo sapiens]
Length = 797
Score = 32.3 bits (72), Expect = 0.084
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 10 DDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMTSGVYRP 69
DDNE+ D + EE G G + G AP P P E P +RP
Sbjct: 58 DDNEEEDDEDEEEEEEEEEGDGEGQEGGDPGSEAPAPGPLIPSPSVEEPHK------HRP 111
Query: 70 PGARLTT 76
RLTT
Sbjct: 112 TTLRLTT 118
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 6 EKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAP 48
+ E+++ E+ ++ GD + GG G + GP + V+ P
Sbjct: 64 DDEDEEEEEEEEEGDGEGQEGGDPGSEAPAPGPLIPSPSVEEP 106
>gi|13259529 survival of motor neuron 2, centromeric isoform b [Homo
sapiens]
Length = 262
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 4 SSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMT 63
++++ E++++ D +N G ++ S PWN P PP P+ P P +
Sbjct: 155 NAQENENESQVSTDESENSRSPGNKSDNIKPKSAPWNSFLP---PPPPM-----PGPRLG 206
Query: 64 SGVYRPP 70
G PP
Sbjct: 207 PGKIIPP 213
>gi|13259531 survival of motor neuron 2, centromeric isoform c [Homo
sapiens]
Length = 250
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 4 SSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMT 63
++++ E++++ D +N G ++ S PWN P PP P+ P P +
Sbjct: 155 NAQENENESQVSTDESENSRSPGNKSDNIKPKSAPWNSFLP---PPPPM-----PGPRLG 206
Query: 64 SGVYRPP 70
G PP
Sbjct: 207 PGKIIPP 213
>gi|13259512 survival of motor neuron 1, telomeric isoform b [Homo
sapiens]
Length = 262
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 4 SSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMT 63
++++ E++++ D +N G ++ S PWN P PP P+ P P +
Sbjct: 155 NAQENENESQVSTDESENSRSPGNKSDNIKPKSAPWNSFLP---PPPPM-----PGPRLG 206
Query: 64 SGVYRPP 70
G PP
Sbjct: 207 PGKIIPP 213
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.304 0.127 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,327,991
Number of Sequences: 37866
Number of extensions: 397423
Number of successful extensions: 2946
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 232
Number of HSP's that attempted gapping in prelim test: 2310
Number of HSP's gapped (non-prelim): 786
length of query: 110
length of database: 18,247,518
effective HSP length: 80
effective length of query: 30
effective length of database: 15,218,238
effective search space: 456547140
effective search space used: 456547140
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.