Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: BRDT Sequence: fasta or formatted (947aa) NCBI GI: 46399198
Description:

testis-specific bromodomain protein

Referenced in:

Bromodomain Family
Testes and Sperm

Other entries for this name:
alt mRNA [947aa] testis-specific bromodomain protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         43           2
 C cysteine            1.2         11           1
 D aspartate           5.0         47           2
 E glutamate           8.4         80           2
 F phenylalanine       2.7         26           1
 G glycine             2.6         25           1
 H histidine           1.8         17           2
 I isoleucine          4.0         38           2
 K lysine             11.5        109           3
 L leucine             7.7         73           2
 M methionine          3.2         30           2
 N asparagine          6.2         59           2
 P proline             5.7         54           4
 Q glutamine           6.8         64           3
 R arginine            4.0         38           4
 S serine             10.3         98           9
 T threonine           5.3         50           3
 V valine              6.1         58           2
 W tryptophan          0.5          5           1
 Y tyrosine            2.3         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   testis-specific bromodomain protein 
BRDT                  1.000   testis-specific bromodomain protein 
BRD2                  0.340   bromodomain containing 2 
BRD2                  0.340   bromodomain containing 2 
BRD3                  0.336   bromodomain containing protein 3 
BRD4                  0.308   bromodomain-containing protein 4 isoform long 
BRD4                  0.303   bromodomain-containing protein 4 isoform short 
PBRM1                 0.037   polybromo 1 isoform 2 
PBRM1                 0.037   polybromo 1 isoform 4 
BPTF                  0.032   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.032   bromodomain PHD finger transcription factor isoform ...
KAT2B                 0.030   K(lysine) acetyltransferase 2B 
EP300                 0.028   E1A binding protein p300 
CREBBP                0.028   CREB binding protein isoform b 
CREBBP                0.028   CREB binding protein isoform a 
TRIM24                0.028   transcriptional intermediary factor 1 alpha isoform ...
TRIM24                0.028   transcriptional intermediary factor 1 alpha isoform ...
KAT2A                 0.027   general control of amino acid synthesis 5-like 2 [H...
CECR2                 0.026   cat eye syndrome chromosome region, candidate 2 [Ho...
BAZ1A                 0.026   bromodomain adjacent to zinc finger domain, 1A isofo...
BAZ1A                 0.026   bromodomain adjacent to zinc finger domain, 1A isofo...
BAZ2B                 0.026   bromodomain adjacent to zinc finger domain, 2B [Homo...
PHIP                  0.023   pleckstrin homology domain interacting protein [Homo...
TRIM33                0.022   tripartite motif-containing 33 protein isoform beta ...
TAF1                  0.022   TBP-associated factor 1 isoform 2 
TAF1                  0.022   TBP-associated factor 1 isoform 1 
BAZ2A                 0.021   bromodomain adjacent to zinc finger domain, 2A [Homo...
PBRM1                 0.021   polybromo 1 isoform 1 
TRIM66                0.021   tripartite motif-containing 66 
TAF1L                 0.021   TBP-associated factor RNA polymerase 1-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press