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Search of human proteins with 19526773
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19526773 Apg3p [Homo sapiens]
(314 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19526773 Apg3p [Homo sapiens] 654 0.0
gi|41406057 amyloid beta A4 protein isoform c precursor [Homo sa... 42 7e-04
gi|209915570 amyloid beta A4 protein isoform e precursor [Homo s... 42 7e-04
gi|196162717 APG10 autophagy 10-like [Homo sapiens] 38 0.010
gi|18594496 APG10 autophagy 10-like [Homo sapiens] 38 0.010
gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo ... 37 0.030
gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo ... 37 0.030
gi|41406055 amyloid beta A4 protein isoform b precursor [Homo sa... 35 0.11
gi|4502167 amyloid beta A4 protein isoform a precursor [Homo sap... 35 0.11
gi|209915573 amyloid beta A4 protein isoform f precursor [Homo s... 35 0.11
gi|45827729 scribble isoform b [Homo sapiens] 35 0.11
gi|45827731 scribble isoform a [Homo sapiens] 35 0.11
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 34 0.15
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 34 0.15
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 34 0.15
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 34 0.19
gi|157694505 LINE-1 type transposase domain containing 1 [Homo s... 33 0.33
gi|4758304 protein disulfide isomerase A4 [Homo sapiens] 33 0.43
gi|156071450 nardilysin isoform a [Homo sapiens] 33 0.43
gi|24415404 MDN1, midasin homolog [Homo sapiens] 33 0.43
gi|189181750 human immunodeficiency virus type I enhancer bindin... 32 0.73
gi|116089331 human immunodeficiency virus type I enhancer bindin... 32 0.73
gi|153791300 SDA1 domain containing 1 [Homo sapiens] 32 0.73
gi|55741655 anoctamin 8 [Homo sapiens] 32 0.96
gi|156071452 nardilysin isoform b [Homo sapiens] 32 0.96
gi|148762982 hypothetical protein LOC387640 [Homo sapiens] 32 0.96
gi|7662316 HIV-1 Vpr binding protein [Homo sapiens] 31 1.2
gi|17975763 myelin transcription factor 1 [Homo sapiens] 31 1.2
gi|6005757 chromatin-specific transcription elongation factor la... 31 1.6
gi|210032580 SET domain containing 1B [Homo sapiens] 31 1.6
>gi|19526773 Apg3p [Homo sapiens]
Length = 314
Score = 654 bits (1687), Expect = 0.0
Identities = 314/314 (100%), Positives = 314/314 (100%)
Query: 1 MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEE 60
MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEE
Sbjct: 1 MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEE 60
Query: 61 LKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITGIT 120
LKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITGIT
Sbjct: 61 LKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITGIT 120
Query: 121 EAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVE 180
EAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVE
Sbjct: 121 EAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVE 180
Query: 181 ACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDH 240
ACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDH
Sbjct: 181 ACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDH 240
Query: 241 VKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAV 300
VKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAV
Sbjct: 241 VKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAV 300
Query: 301 IPTIEYDYTRHFTM 314
IPTIEYDYTRHFTM
Sbjct: 301 IPTIEYDYTRHFTM 314
>gi|41406057 amyloid beta A4 protein isoform c precursor [Homo
sapiens]
Length = 695
Score = 42.0 bits (97), Expect = 7e-04
Identities = 40/132 (30%), Positives = 55/132 (41%), Gaps = 14/132 (10%)
Query: 85 CKQMEYSDELE-AIIEEDDGDGGW--VDTYHNTGITGITEAVKEITLENKDNIRLQDCSA 141
C E SD ++ A EEDD D W DT + G + V E+ E + A
Sbjct: 187 CPLAEESDNVDSADAEEDDSDVWWGGADTDY---ADGSEDKVVEVAEEEE--------VA 235
Query: 142 LCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVEACKAKTDAGGEDAILQTRTYD 201
EEEE +D+ + D +E EE +EAT T I T++ E + T
Sbjct: 236 EVEEEEADDDEDDEDGDEVEEEAEEPYEEATERTTSIATTTTTTTESVEEVVRVPTTAAS 295
Query: 202 LYITYDKYYQTP 213
DKY +TP
Sbjct: 296 TPDAVDKYLETP 307
>gi|209915570 amyloid beta A4 protein isoform e precursor [Homo
sapiens]
Length = 639
Score = 42.0 bits (97), Expect = 7e-04
Identities = 40/132 (30%), Positives = 55/132 (41%), Gaps = 14/132 (10%)
Query: 85 CKQMEYSDELE-AIIEEDDGDGGW--VDTYHNTGITGITEAVKEITLENKDNIRLQDCSA 141
C E SD ++ A EEDD D W DT + G + V E+ E + A
Sbjct: 131 CPLAEESDNVDSADAEEDDSDVWWGGADTDY---ADGSEDKVVEVAEEEE--------VA 179
Query: 142 LCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVEACKAKTDAGGEDAILQTRTYD 201
EEEE +D+ + D +E EE +EAT T I T++ E + T
Sbjct: 180 EVEEEEADDDEDDEDGDEVEEEAEEPYEEATERTTSIATTTTTTTESVEEVVRVPTTAAS 239
Query: 202 LYITYDKYYQTP 213
DKY +TP
Sbjct: 240 TPDAVDKYLETP 251
>gi|196162717 APG10 autophagy 10-like [Homo sapiens]
Length = 220
Score = 38.1 bits (87), Expect = 0.010
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 18/116 (15%)
Query: 167 ETDEATLDTRKIVEACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQP 226
E E LD +++E A + Y+ ++ Y YQ P L+ +P
Sbjct: 73 EAFELPLDDCEVIETAAAS----------EVIKYEYHVLYSCSYQVPVLYFRASFLDGRP 122
Query: 227 LTVEHMYEDISQDHVKK-------TVTIENHPHLPPPPMCSVHPCRHAEVMKKIIE 275
LT++ ++E + + + + T+T + HP L P +HPC+ E M +++
Sbjct: 123 LTLKDIWEGVHECYKMRLLQGPWDTITQQEHPIL-GQPFFVLHPCKTNEFMTPVLK 177
>gi|18594496 APG10 autophagy 10-like [Homo sapiens]
Length = 220
Score = 38.1 bits (87), Expect = 0.010
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 18/116 (15%)
Query: 167 ETDEATLDTRKIVEACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQP 226
E E LD +++E A + Y+ ++ Y YQ P L+ +P
Sbjct: 73 EAFELPLDDCEVIETAAAS----------EVIKYEYHVLYSCSYQVPVLYFRASFLDGRP 122
Query: 227 LTVEHMYEDISQDHVKK-------TVTIENHPHLPPPPMCSVHPCRHAEVMKKIIE 275
LT++ ++E + + + + T+T + HP L P +HPC+ E M +++
Sbjct: 123 LTLKDIWEGVHECYKMRLLQGPWDTITQQEHPIL-GQPFFVLHPCKTNEFMTPVLK 177
>gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo
sapiens]
Length = 5033
Score = 36.6 bits (83), Expect = 0.030
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 144 EEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVEACKAKTDAGGEDAILQTR 198
EEE++E+EGE D EE EE E + ++ EA + + + G E+ +LQ +
Sbjct: 1876 EEEDEEEEGEEEDEEEKEEDEEETAQEKEDEEKEEEEAAEGEKEEGLEEGLLQMK 1930
>gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo
sapiens]
Length = 5038
Score = 36.6 bits (83), Expect = 0.030
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 144 EEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVEACKAKTDAGGEDAILQTR 198
EEE++E+EGE D EE EE E + ++ EA + + + G E+ +LQ +
Sbjct: 1876 EEEDEEEEGEEEDEEEKEEDEEETAQEKEDEEKEEEEAAEGEKEEGLEEGLLQMK 1930
>gi|41406055 amyloid beta A4 protein isoform b precursor [Homo
sapiens]
Length = 751
Score = 34.7 bits (78), Expect = 0.11
Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 85 CKQMEYSDELE-AIIEEDDGDGGW--VDTYHNTGITGITEAVKEITLENKDNIRLQDCSA 141
C E SD ++ A EEDD D W DT + G + V E+ E + A
Sbjct: 187 CPLAEESDNVDSADAEEDDSDVWWGGADTDY---ADGSEDKVVEVAEEEE--------VA 235
Query: 142 LCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVEACKAKTDA 188
EEEE +D+ + D +E EE +EAT T I T++
Sbjct: 236 EVEEEEADDDEDDEDGDEVEEEAEEPYEEATERTTSIATTTTTTTES 282
>gi|4502167 amyloid beta A4 protein isoform a precursor [Homo
sapiens]
Length = 770
Score = 34.7 bits (78), Expect = 0.11
Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 85 CKQMEYSDELE-AIIEEDDGDGGW--VDTYHNTGITGITEAVKEITLENKDNIRLQDCSA 141
C E SD ++ A EEDD D W DT + G + V E+ E + A
Sbjct: 187 CPLAEESDNVDSADAEEDDSDVWWGGADTDY---ADGSEDKVVEVAEEEE--------VA 235
Query: 142 LCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVEACKAKTDA 188
EEEE +D+ + D +E EE +EAT T I T++
Sbjct: 236 EVEEEEADDDEDDEDGDEVEEEAEEPYEEATERTTSIATTTTTTTES 282
>gi|209915573 amyloid beta A4 protein isoform f precursor [Homo
sapiens]
Length = 714
Score = 34.7 bits (78), Expect = 0.11
Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 85 CKQMEYSDELE-AIIEEDDGDGGW--VDTYHNTGITGITEAVKEITLENKDNIRLQDCSA 141
C E SD ++ A EEDD D W DT + G + V E+ E + A
Sbjct: 131 CPLAEESDNVDSADAEEDDSDVWWGGADTDY---ADGSEDKVVEVAEEEE--------VA 179
Query: 142 LCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVEACKAKTDA 188
EEEE +D+ + D +E EE +EAT T I T++
Sbjct: 180 EVEEEEADDDEDDEDGDEVEEEAEEPYEEATERTTSIATTTTTTTES 226
>gi|45827729 scribble isoform b [Homo sapiens]
Length = 1630
Score = 34.7 bits (78), Expect = 0.11
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 16/108 (14%)
Query: 67 LPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIE-----EDDGD-----GGWVDTYHNTGI 116
LP G+Q L+ K+ P YK+ ++ + EA++ + DG+ GGW + H
Sbjct: 595 LPGGRQRLIRKDTPHYKKHFKISKLPQPEAVVALLQGMQPDGEGPVAPGGWHNGPH---A 651
Query: 117 TGITEAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESG 164
A KE E + + + ++ EEEE+ E E A EE ++ G
Sbjct: 652 PWAPRAQKEEEEEEEGSPQEEEEE---EEEENRAEEEEASTEEEDKEG 696
>gi|45827731 scribble isoform a [Homo sapiens]
Length = 1655
Score = 34.7 bits (78), Expect = 0.11
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 16/108 (14%)
Query: 67 LPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIE-----EDDGD-----GGWVDTYHNTGI 116
LP G+Q L+ K+ P YK+ ++ + EA++ + DG+ GGW + H
Sbjct: 595 LPGGRQRLIRKDTPHYKKHFKISKLPQPEAVVALLQGMQPDGEGPVAPGGWHNGPH---A 651
Query: 117 TGITEAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESG 164
A KE E + + + ++ EEEE+ E E A EE ++ G
Sbjct: 652 PWAPRAQKEEEEEEEGSPQEEEEE---EEEENRAEEEEASTEEEDKEG 696
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 34.3 bits (77), Expect = 0.15
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 21/133 (15%)
Query: 144 EEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVEACKAKTDAGGEDAILQTRTYDLY 203
EEEEDE+E E D +E E+ G +EA++ V+ + + D ED + + +T
Sbjct: 72 EEEEDEEEEEDDDDDELEDEG---EEEASMPNENSVKEPEIRCDEKPEDLLEEPKTTSEE 128
Query: 204 ITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQ------DHVKKTVT----IENHPHL 253
D TP + + P T E D+ + H ++ T +E H H+
Sbjct: 129 TLEDCSEVTPAMQI--------PRTKEEANGDVFETFMFPCQHCERKFTTKQGLERHMHI 180
Query: 254 PPPPMCSVHPCRH 266
+ C++
Sbjct: 181 HISTVNHAFKCKY 193
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 34.3 bits (77), Expect = 0.15
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 21/133 (15%)
Query: 144 EEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVEACKAKTDAGGEDAILQTRTYDLY 203
EEEEDE+E E D +E E+ G +EA++ V+ + + D ED + + +T
Sbjct: 273 EEEEDEEEEEDDDDDELEDEG---EEEASMPNENSVKEPEIRCDEKPEDLLEEPKTTSEE 329
Query: 204 ITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQ------DHVKKTVT----IENHPHL 253
D TP + + P T E D+ + H ++ T +E H H+
Sbjct: 330 TLEDCSEVTPAMQI--------PRTKEEANGDVFETFMFPCQHCERKFTTKQGLERHMHI 381
Query: 254 PPPPMCSVHPCRH 266
+ C++
Sbjct: 382 HISTVNHAFKCKY 394
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 34.3 bits (77), Expect = 0.15
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 21/133 (15%)
Query: 144 EEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVEACKAKTDAGGEDAILQTRTYDLY 203
EEEEDE+E E D +E E+ G +EA++ V+ + + D ED + + +T
Sbjct: 273 EEEEDEEEEEDDDDDELEDEG---EEEASMPNENSVKEPEIRCDEKPEDLLEEPKTTSEE 329
Query: 204 ITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQ------DHVKKTVT----IENHPHL 253
D TP + + P T E D+ + H ++ T +E H H+
Sbjct: 330 TLEDCSEVTPAMQI--------PRTKEEANGDVFETFMFPCQHCERKFTTKQGLERHMHI 381
Query: 254 PPPPMCSVHPCRH 266
+ C++
Sbjct: 382 HISTVNHAFKCKY 394
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 33.9 bits (76), Expect = 0.19
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 99 EEDDGDGGWVDTYHNTGITGITEAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADME 158
EE+D + +D + TE V+ NK +I +++ EEEE+E+E + E
Sbjct: 494 EEEDTEDAGLDDWEAMASDEETEKVEG----NKVHIEVKENPEEEEEEEEEEEEDEESEE 549
Query: 159 EYEESGLLETDEATLDTRKI 178
E EE G E E + K+
Sbjct: 550 EEEEEGESEGSEGDEEDEKV 569
>gi|157694505 LINE-1 type transposase domain containing 1 [Homo
sapiens]
Length = 865
Score = 33.1 bits (74), Expect = 0.33
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
Query: 137 QDCSALCEEEED------EDEGEAADMEEYEESGLLETDEAT 172
+D S L EEEE+ E+E EA+ +EE E SGL E +E T
Sbjct: 398 EDTSGLEEEEEEPSGLEEEEEEEASGLEEDEASGLEEEEEQT 439
>gi|4758304 protein disulfide isomerase A4 [Homo sapiens]
Length = 645
Score = 32.7 bits (73), Expect = 0.43
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 144 EEEEDEDEGEAADMEEYEESGLLETDEATLD 174
EEEE++D+ E D+E EE+G+L ++A D
Sbjct: 43 EEEEEDDDEEEDDLEVKEENGVLVLNDANFD 73
>gi|156071450 nardilysin isoform a [Homo sapiens]
Length = 1219
Score = 32.7 bits (73), Expect = 0.43
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 144 EEEEDEDEGEAADMEEYEESGLLETDE------ATLDTR-KIVEACKAKTDAGGEDAILQ 196
EEEED+DE A++E+ +E G + DE LDT +E + + +A + Q
Sbjct: 151 EEEEDDDEDSGAEIEDDDEEGFDDEDEFDDEHDDDLDTEDNELEELEERAEARKKTTEKQ 210
Query: 197 TRTYDLYITYDKYYQTPRLWLFG-YDEQRQPLTVE 230
+ L++ + K T RLW Y + L VE
Sbjct: 211 -QLQSLFLLWSKL--TDRLWFKSTYSKMSSTLLVE 242
>gi|24415404 MDN1, midasin homolog [Homo sapiens]
Length = 5596
Score = 32.7 bits (73), Expect = 0.43
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 14/80 (17%)
Query: 92 DELEAIIEEDDGDGGWVDTYHNTGITGITEAVKE-ITLENKDNIRLQDCSALCEEEEDED 150
D++ I+E D D VD YH G E V E L+ D++ L + ED++
Sbjct: 4847 DKINEQIDERDYDENEVDPYH-----GNQEKVPEPEALDLPDDLNL--------DSEDKN 4893
Query: 151 EGEAADMEEYEESGLLETDE 170
GE D EE EE LE E
Sbjct: 4894 GGEDTDNEEGEEENPLEIKE 4913
Score = 28.5 bits (62), Expect = 8.1
Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 21/124 (16%)
Query: 92 DELEAIIEEDDGDGGWVDTYHNTGITGITEAVKEITLENKDNIRLQDCSALCEEEED--- 148
+E E E+ D +GG +D H + G EA K D+ +D EEEED
Sbjct: 4743 EEQEEDDEKSDSEGGDLDK-HMGDLNG-EEADKLDERLWGDDDEEED-----EEEEDNKT 4795
Query: 149 EDEGEAADMEEYE--------ESGLLETDEATLDTRKIVEACKAKTDAGGEDAI---LQT 197
E+ G D E+ E +SG D++ D ++ E +A GED I +
Sbjct: 4796 EETGPGMDEEDSELVAKDDNLDSGNSNKDKSQQDKKEEKEEAEADDGGQGEDKINEQIDE 4855
Query: 198 RTYD 201
R YD
Sbjct: 4856 RDYD 4859
>gi|189181750 human immunodeficiency virus type I enhancer binding
protein 3 b [Homo sapiens]
Length = 2405
Score = 32.0 bits (71), Expect = 0.73
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Query: 83 KRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITGITEAVKEITLENKDNIRLQDCSAL 142
K+C++ +ELEA EE D + D+ G +EAV+E + ++ D +
Sbjct: 1808 KKCQETGVLEELEA--EEGTSDDLFQDSEGREG----SEAVEEHQFSDLED---SDSDSD 1858
Query: 143 CEEEEDEDEGEAAD 156
+E+EDEDE E+ D
Sbjct: 1859 LDEDEDEDEEESQD 1872
>gi|116089331 human immunodeficiency virus type I enhancer binding
protein 3 [Homo sapiens]
Length = 2406
Score = 32.0 bits (71), Expect = 0.73
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Query: 83 KRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITGITEAVKEITLENKDNIRLQDCSAL 142
K+C++ +ELEA EE D + D+ G +EAV+E + ++ D +
Sbjct: 1808 KKCQETGVLEELEA--EEGTSDDLFQDSEGREG----SEAVEEHQFSDLED---SDSDSD 1858
Query: 143 CEEEEDEDEGEAAD 156
+E+EDEDE E+ D
Sbjct: 1859 LDEDEDEDEEESQD 1872
>gi|153791300 SDA1 domain containing 1 [Homo sapiens]
Length = 687
Score = 32.0 bits (71), Expect = 0.73
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 60 ELKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNT 114
EL K Y+P + V K + + E E ++ EE+D DG W+D H++
Sbjct: 469 ELDAKDYIPGAEVLEVEKE----ENAENDEDGWESTSLSEEEDADGEWIDVQHSS 519
>gi|55741655 anoctamin 8 [Homo sapiens]
Length = 1232
Score = 31.6 bits (70), Expect = 0.96
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 144 EEEEDEDEGEAADMEEYEESGLLE 167
++EE+EDE E D EE EE GLL+
Sbjct: 586 DDEEEEDEEEEEDEEEGEEGGLLD 609
>gi|156071452 nardilysin isoform b [Homo sapiens]
Length = 1151
Score = 31.6 bits (70), Expect = 0.96
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 144 EEEEDEDEGEAADMEEYEESGLLETDE 170
EEEED+DE A++E+ +E G + DE
Sbjct: 151 EEEEDDDEDSGAEIEDDDEEGFDDEDE 177
>gi|148762982 hypothetical protein LOC387640 [Homo sapiens]
Length = 908
Score = 31.6 bits (70), Expect = 0.96
Identities = 16/62 (25%), Positives = 31/62 (50%)
Query: 136 LQDCSALCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVEACKAKTDAGGEDAIL 195
L S EE+E+EGE + EE EE G +D + + + + + ++ + +G +
Sbjct: 402 LSSSSNSVSSEEEEEEGEEEEEEEEEEGGSGASDSSEVSSEEEDSSTESDSSSGSSQVSV 461
Query: 196 QT 197
Q+
Sbjct: 462 QS 463
>gi|7662316 HIV-1 Vpr binding protein [Homo sapiens]
Length = 1507
Score = 31.2 bits (69), Expect = 1.2
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 96 AIIEEDDGDGGWVDTYHNTGITGITEAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAA 155
A+IE G +D + + + E ++ E++D Q+ EE++DED+ +
Sbjct: 1367 AVIENQ----GSMDALNMDTVCRLYEVGRQRLAEDEDEEEDQEEEEQEEEDDDEDDDDTD 1422
Query: 156 DMEEYEESGLLETD 169
D++E + LLE +
Sbjct: 1423 DLDELDTDQLLEAE 1436
>gi|17975763 myelin transcription factor 1 [Homo sapiens]
Length = 1121
Score = 31.2 bits (69), Expect = 1.2
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 144 EEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVEACKAKTDAGGEDAILQTRT 199
EEEE+E+E E D EE EE E +E + + E + + + D I Q T
Sbjct: 262 EEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAAPDVIFQEDT 317
>gi|6005757 chromatin-specific transcription elongation factor large
subunit [Homo sapiens]
Length = 1047
Score = 30.8 bits (68), Expect = 1.6
Identities = 28/133 (21%), Positives = 62/133 (46%), Gaps = 4/133 (3%)
Query: 71 KQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDG---DGGWVDTYHNTGITGITEAVKEIT 127
K++L + ++ + + + ++ ++ I+++ +G GGW + E E
Sbjct: 883 KEWLNSCDLKYTEGVQSLNWTKIMKTIVDDPEGFFEQGGWSFLEPEGEGSDAEEGDSESE 942
Query: 128 LENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRKI-VEACKAKT 186
+E++ +D EE+ DED A+ +Y + L +E+ D ++ EA KA
Sbjct: 943 IEDETFNPSEDDYEEEEEDSDEDYSSEAEESDYSKESLGSEEESGKDWDELEEEARKADR 1002
Query: 187 DAGGEDAILQTRT 199
++ E+ Q+R+
Sbjct: 1003 ESRYEEEEEQSRS 1015
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 30.8 bits (68), Expect = 1.6
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 117 TGITEAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEE-------SGLLETD 169
+G E KE E +++ ++ + EEEED+D+ ++ D +E E S E D
Sbjct: 1031 SGGEEDEKESLSEEQESTEEEEEAEEEEEEEDDDDDDSDDRDESENDDEDTALSEASEKD 1090
Query: 170 EATLDTRKIVEACKAKTDA 188
E D + V +K +A
Sbjct: 1091 EGDSDEEETVSIVTSKAEA 1109
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,118,819
Number of Sequences: 37866
Number of extensions: 625383
Number of successful extensions: 4947
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 4248
Number of HSP's gapped (non-prelim): 443
length of query: 314
length of database: 18,247,518
effective HSP length: 102
effective length of query: 212
effective length of database: 14,385,186
effective search space: 3049659432
effective search space used: 3049659432
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.