Guide to the Human Genome
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Name: C14orf93 Sequence: fasta or formatted (538aa) NCBI GI: 195233774
Description:

hypothetical protein LOC60686

Not currently referenced in the text

Other entries for this name:
alt mRNA {538aa} hypothetical protein LOC60686
alt mRNA {538aa} hypothetical protein LOC60686
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         43           4
 C cysteine            2.2         12           4
 D aspartate           4.5         24           2
 E glutamate           9.5         51           3
 F phenylalanine       2.6         14           1
 G glycine             7.6         41           2
 H histidine           2.2         12           1
 I isoleucine          2.2         12           1
 K lysine              5.4         29           2
 L leucine            10.2         55           2
 M methionine          0.9          5           1
 N asparagine          4.8         26           2
 P proline             8.2         44           3
 Q glutamine           3.7         20           1
 R arginine            6.5         35           2
 S serine              8.9         48           2
 T threonine           4.3         23           1
 V valine              5.8         31           2
 W tryptophan          0.6          3           1
 Y tyrosine            1.9         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC60686 
C14orf93              1.000   hypothetical protein LOC60686 
C14orf93              1.000   hypothetical protein LOC60686 
FAM48B1               0.012   hypothetical protein LOC100130302 
KANK4                 0.011   ankyrin repeat domain 38 
TCOF1                 0.009   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.009   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.009   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.009   Treacher Collins-Franceschetti syndrome 1 isoform b ...
TCOF1                 0.009   Treacher Collins-Franceschetti syndrome 1 isoform a ...
TCOF1                 0.009   Treacher Collins-Franceschetti syndrome 1 isoform c ...
BOD1L                 0.009   biorientation of chromosomes in cell division 1-like...
DGKK                  0.009   diacylglycerol kinase kappa 
SFRS8                 0.008   splicing factor, arginine/serine-rich 8 
CLIC6                 0.008   chloride intracellular channel 6 
SDCCAG8               0.008   serologically defined colon cancer antigen 8 
SYMPK                 0.008   symplekin 
FMNL1                 0.008   formin-like 1 
LOC728636             0.008   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC647042             0.008   PREDICTED: hypothetical protein isoform 2 
LOC647042             0.008   PREDICTED: hypothetical protein isoform 1 
SLC16A11              0.008   solute carrier family 16, member 11 
RIN2                  0.008   Ras and Rab interactor 2 
LOC440295             0.008   hypothetical protein LOC440295 
PRPF40B               0.008   Huntingtin interacting protein C isoform 2 
PRPF40B               0.008   Huntingtin interacting protein C isoform 1 
FAM22G                0.007   hypothetical protein LOC441457 
APC                   0.007   adenomatous polyposis coli 
APC                   0.007   adenomatous polyposis coli 
APC                   0.007   adenomatous polyposis coli 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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