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Search of human proteins with 194688135
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|194688135 high-mobility group box 2 [Homo sapiens]
(209 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|194688135 high-mobility group box 2 [Homo sapiens] 436 e-123
gi|194688133 high-mobility group box 2 [Homo sapiens] 436 e-123
gi|11321591 high-mobility group box 2 [Homo sapiens] 436 e-123
gi|4504425 high-mobility group box 1 [Homo sapiens] 362 e-100
gi|56806673 high-mobility group box 1-like 1 [Homo sapiens] 341 2e-94
gi|71143137 high-mobility group box 3 [Homo sapiens] 308 3e-84
gi|113421073 PREDICTED: similar to high mobility group box 3 [Ho... 275 2e-74
gi|113420668 PREDICTED: similar to high mobility group box 3 [Ho... 275 2e-74
gi|169184027 PREDICTED: similar to high mobility group box 3 [Ho... 275 2e-74
gi|169212060 PREDICTED: high mobility group protein B3-like prot... 273 8e-74
gi|239745831 PREDICTED: high mobility group protein B3-like prot... 273 8e-74
gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens] 265 2e-71
gi|169217198 PREDICTED: similar to hCG1644442 [Homo sapiens] 262 1e-70
gi|169216377 PREDICTED: similar to hCG1644442 [Homo sapiens] 262 1e-70
gi|169216609 PREDICTED: hypothetical protein LOC203510 [Homo sap... 262 1e-70
gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens] 259 1e-69
gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens] 259 1e-69
gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens] 257 4e-69
gi|169168462 PREDICTED: similar to high mobility group box 3 [Ho... 252 2e-67
gi|169168166 PREDICTED: similar to high mobility group box 3 [Ho... 252 2e-67
gi|113416897 PREDICTED: similar to high mobility group box 3 iso... 252 2e-67
gi|239742753 PREDICTED: similar to high mobility group box 3 iso... 195 2e-50
gi|57232750 HMG2 like isoform 1 [Homo sapiens] 160 7e-40
gi|239752318 PREDICTED: similar to hCG1647425 [Homo sapiens] 154 4e-38
gi|239746826 PREDICTED: similar to hCG1647425 [Homo sapiens] 154 4e-38
gi|239757817 PREDICTED: similar to hCG1647425 [Homo sapiens] 129 1e-30
gi|4507241 structure specific recognition protein 1 [Homo sapiens] 93 2e-19
gi|57232748 HMG2 like isoform 2 [Homo sapiens] 88 6e-18
gi|115529449 upstream binding transcription factor, RNA polymera... 79 4e-15
gi|115529451 upstream binding transcription factor, RNA polymera... 79 4e-15
>gi|194688135 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 436 bits (1122), Expect = e-123
Identities = 209/209 (100%), Positives = 209/209 (100%)
Query: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL
Sbjct: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG
Sbjct: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
Query: 181 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE 209
SKKKNEPEDEEEEEEEEDEDEEEEDEDEE
Sbjct: 181 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE 209
>gi|194688133 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 436 bits (1122), Expect = e-123
Identities = 209/209 (100%), Positives = 209/209 (100%)
Query: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL
Sbjct: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG
Sbjct: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
Query: 181 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE 209
SKKKNEPEDEEEEEEEEDEDEEEEDEDEE
Sbjct: 181 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE 209
>gi|11321591 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 436 bits (1122), Expect = e-123
Identities = 209/209 (100%), Positives = 209/209 (100%)
Query: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL
Sbjct: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG
Sbjct: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
Query: 181 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE 209
SKKKNEPEDEEEEEEEEDEDEEEEDEDEE
Sbjct: 181 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE 209
>gi|4504425 high-mobility group box 1 [Homo sapiens]
Length = 215
Score = 362 bits (929), Expect = e-100
Identities = 170/209 (81%), Positives = 189/209 (90%)
Query: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
MGKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KF
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
EDMAK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGL
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
SIGD AKKLGEMW+ +A DKQPYE+KAAKLKEKYEKDIAAYRAKGK +A KKG +
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
Query: 181 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE 209
SKKK E E++EE+EE+E+E+E+EEDEDEE
Sbjct: 181 SKKKKEEEEDEEDEEDEEEEEDEEDEDEE 209
>gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]
Length = 211
Score = 341 bits (875), Expect = 2e-94
Identities = 159/209 (76%), Positives = 183/209 (87%)
Query: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
MGKGDP KPRGKMSSYAFFVQTCREEHKKKH D+SVNF+EFS KCSERWKTMSAKEK KF
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKF 60
Query: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
EDMAK+DK Y+R+MK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE+ PKIK EHPGL
Sbjct: 61 EDMAKADKTHYERQMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGL 120
Query: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
SIGD AKKLGEMW+ +A DKQP E+KAAKLKEKYEKDIAAY+AKGK EA KKG +
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPGEKKAAKLKEKYEKDIAAYQAKGKPEAAKKGVVKAEK 180
Query: 181 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE 209
SKKK E E++EE+EE+E+E++EE++ED++
Sbjct: 181 SKKKKEEEEDEEDEEDEEEEDEEDEEDDD 209
>gi|71143137 high-mobility group box 3 [Homo sapiens]
Length = 200
Score = 308 bits (788), Expect = 3e-84
Identities = 150/205 (73%), Positives = 174/205 (84%), Gaps = 5/205 (2%)
Query: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
M KGDP KP+GKMS+YAFFVQTCREEHKKK+P+ VNFAEFSKKCSERWKTMS KEKSKF
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF 60
Query: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
++MAK+DK RYDREMK+Y P KG KK KKDPNAPKRPPS FFLFCSE RPKIKS +PG+
Sbjct: 61 DEMAKADKVRYDREMKDYGPAKGGKK--KKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
SIGD AKKLGEMW+ + +KQPY KAAKLKEKYEKD+A Y++KGK + G KGP +
Sbjct: 119 SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFD-GAKGPAKV-- 175
Query: 181 SKKKNEPEDEEEEEEEEDEDEEEED 205
++KK E EDEEEEEEEE+E+EEE++
Sbjct: 176 ARKKVEEEDEEEEEEEEEEEEEEDE 200
>gi|113421073 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 275 bits (704), Expect = 2e-74
Identities = 138/206 (66%), Positives = 163/206 (79%), Gaps = 6/206 (2%)
Query: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
M KGDP KP+GKMS+YAF VQTC +EHKKK+P+ VNFAEFSKKCS RWKTMS+KEK KF
Sbjct: 1 MAKGDPKKPQGKMSAYAFSVQTCCKEHKKKNPEVPVNFAEFSKKCSGRWKTMSSKEKFKF 60
Query: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
+MAK+D+ YDREMK+Y P KG GKKKDPNAPKRPPS FFLFCSE RPKIKS +PG+
Sbjct: 61 GEMAKADEVCYDREMKDYGPAKG---GKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 117
Query: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
SIGD AKKLGEMW+ + +KQPY KAAKLKEKYEKD+ + KGK G K P +
Sbjct: 118 SIGDVAKKLGEMWNNLNDSEKQPYVTKAAKLKEKYEKDVVDCKLKGKF-YGAKRPAKV-- 174
Query: 181 SKKKNEPEDEEEEEEEEDEDEEEEDE 206
++KK E EDEE+EEEEE E +EE+++
Sbjct: 175 ARKKVEEEDEEDEEEEEKEKDEEDEQ 200
>gi|113420668 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 275 bits (704), Expect = 2e-74
Identities = 138/206 (66%), Positives = 163/206 (79%), Gaps = 6/206 (2%)
Query: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
M KGDP KP+GKMS+YAF VQTC +EHKKK+P+ VNFAEFSKKCS RWKTMS+KEK KF
Sbjct: 1 MAKGDPKKPQGKMSAYAFSVQTCCKEHKKKNPEVPVNFAEFSKKCSGRWKTMSSKEKFKF 60
Query: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
+MAK+D+ YDREMK+Y P KG GKKKDPNAPKRPPS FFLFCSE RPKIKS +PG+
Sbjct: 61 GEMAKADEVCYDREMKDYGPAKG---GKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 117
Query: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
SIGD AKKLGEMW+ + +KQPY KAAKLKEKYEKD+ + KGK G K P +
Sbjct: 118 SIGDVAKKLGEMWNNLNDSEKQPYVTKAAKLKEKYEKDVVDCKLKGKF-YGAKRPAKV-- 174
Query: 181 SKKKNEPEDEEEEEEEEDEDEEEEDE 206
++KK E EDEE+EEEEE E +EE+++
Sbjct: 175 ARKKVEEEDEEDEEEEEKEKDEEDEQ 200
>gi|169184027 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 275 bits (703), Expect = 2e-74
Identities = 138/206 (66%), Positives = 163/206 (79%), Gaps = 6/206 (2%)
Query: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
M KGDP KP+GKMS+YAF VQTC +EHKKK+P+ VNFAEFSKKCS RWKTMS+KEK KF
Sbjct: 1 MAKGDPKKPQGKMSAYAFSVQTCCKEHKKKNPEVLVNFAEFSKKCSGRWKTMSSKEKFKF 60
Query: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
+MAK+D+ YDREMK+Y P KG GKKKDPNAPKRPPS FFLFCSE RPKIKS +PG+
Sbjct: 61 GEMAKADEVCYDREMKDYGPAKG---GKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 117
Query: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
SIGD AKKLGEMW+ + +KQPY KAAKLKEKYEKD+ + KGK G K P +
Sbjct: 118 SIGDVAKKLGEMWNNLNDSEKQPYVTKAAKLKEKYEKDVVDCKLKGKF-YGAKRPAKV-- 174
Query: 181 SKKKNEPEDEEEEEEEEDEDEEEEDE 206
++KK E EDEE+EEEEE E +EE+++
Sbjct: 175 ARKKVEEEDEEDEEEEEKEKDEEDEQ 200
>gi|169212060 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 273 bits (698), Expect = 8e-74
Identities = 133/193 (68%), Positives = 156/193 (80%), Gaps = 6/193 (3%)
Query: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
M KGDP KP+GKMS+YAFFVQTCREEHKKK+P +NFAEFSKKCSERWKTMS KEKSKF
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKF 60
Query: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
++AK+DK YD+E+K+Y P KG GKKKDPNAPKRPPS FFLFCSE PK KS +PG+
Sbjct: 61 NELAKADKVHYDQEIKDYGPAKG---GKKKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGI 117
Query: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
IGD AKKLGEMW + +KQPY +AAKLKEKYEKD+A Y++KGKS+ G KGP +
Sbjct: 118 PIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEKDVAVYKSKGKSD-GAKGPAKV-- 174
Query: 181 SKKKNEPEDEEEE 193
++KK E EDE+EE
Sbjct: 175 AQKKVEEEDEDEE 187
>gi|239745831 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 273 bits (698), Expect = 8e-74
Identities = 133/193 (68%), Positives = 156/193 (80%), Gaps = 6/193 (3%)
Query: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
M KGDP KP+GKMS+YAFFVQTCREEHKKK+P +NFAEFSKKCSERWKTMS KEKSKF
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKF 60
Query: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
++AK+DK YD+E+K+Y P KG GKKKDPNAPKRPPS FFLFCSE PK KS +PG+
Sbjct: 61 NELAKADKVHYDQEIKDYGPAKG---GKKKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGI 117
Query: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
IGD AKKLGEMW + +KQPY +AAKLKEKYEKD+A Y++KGKS+ G KGP +
Sbjct: 118 PIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEKDVAVYKSKGKSD-GAKGPAKV-- 174
Query: 181 SKKKNEPEDEEEE 193
++KK E EDE+EE
Sbjct: 175 AQKKVEEEDEDEE 187
>gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]
Length = 879
Score = 265 bits (677), Expect = 2e-71
Identities = 129/184 (70%), Positives = 149/184 (80%), Gaps = 3/184 (1%)
Query: 25 EEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGD 84
EEHKKK+PD+SV F+EF KKCSE WKT+ AKEK KFEDMAK+DKA Y+REMK Y+PPKG+
Sbjct: 699 EEHKKKNPDASVKFSEFLKKCSETWKTIFAKEKGKFEDMAKADKAHYEREMKTYIPPKGE 758
Query: 85 KKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPY 144
KK K KDPNAPKRPP AFFLFCSE+RPKIK EHPGLSI D KKL MW+ +A DKQ Y
Sbjct: 759 KKKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAADKQFY 818
Query: 145 EQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEEE 204
E+KAAKLKEKY+KDIAAYRAKGK + KK + SKKK E EEE+EE+E E+E EE
Sbjct: 819 EKKAAKLKEKYKKDIAAYRAKGKPNSAKKRVVKAEKSKKKKE---EEEDEEDEQEEENEE 875
Query: 205 DEDE 208
D+D+
Sbjct: 876 DDDK 879
Score = 40.0 bits (92), Expect = 0.001
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
DPN P+ ++ F R + K +HP S++ + KK + W +A +K +E A
Sbjct: 765 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSID--DVVKKLAGMWNNTAAADKQFYEKKA 822
Query: 65 KSDKARYDREMKNYVPPKGDKKGKKKDPNAPK 96
K +Y +++ Y KK+ A K
Sbjct: 823 AKLKEKYKKDIAAYRAKGKPNSAKKRVVKAEK 854
>gi|169217198 PREDICTED: similar to hCG1644442 [Homo sapiens]
Length = 201
Score = 262 bits (670), Expect = 1e-70
Identities = 133/205 (64%), Positives = 159/205 (77%), Gaps = 5/205 (2%)
Query: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
M +GD KP+GKMS+YAFF QTCREEHKKK+P+ VNF EFSKKCSE+ KTMS KEK+KF
Sbjct: 1 MAEGDHKKPKGKMSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKF 60
Query: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
++MAK DK YD+EMK+ P +G GKKKDPNA KRP S FFLFCSE PKIKS +PG+
Sbjct: 61 DEMAKVDKVHYDQEMKDNGPVEG---GKKKDPNALKRPLSGFFLFCSEFHPKIKSTNPGI 117
Query: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
SIGD AKKLGEMW S ++KQPY KAA LKEKYEKD+A Y++KGK ++ KGP +
Sbjct: 118 SIGDMAKKLGEMWINYSDREKQPYITKAADLKEKYEKDVADYKSKGKFDSA-KGPTKIAW 176
Query: 181 SK-KKNEPEDEEEEEEEEDEDEEEE 204
K K+ + EDEEEEEEEE++ EE E
Sbjct: 177 KKVKEKDKEDEEEEEEEEEKKEEGE 201
>gi|169216377 PREDICTED: similar to hCG1644442 [Homo sapiens]
Length = 201
Score = 262 bits (670), Expect = 1e-70
Identities = 133/205 (64%), Positives = 159/205 (77%), Gaps = 5/205 (2%)
Query: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
M +GD KP+GKMS+YAFF QTCREEHKKK+P+ VNF EFSKKCSE+ KTMS KEK+KF
Sbjct: 1 MAEGDHKKPKGKMSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKF 60
Query: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
++MAK DK YD+EMK+ P +G GKKKDPNA KRP S FFLFCSE PKIKS +PG+
Sbjct: 61 DEMAKVDKVHYDQEMKDNGPVEG---GKKKDPNALKRPLSGFFLFCSEFHPKIKSTNPGI 117
Query: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
SIGD AKKLGEMW S ++KQPY KAA LKEKYEKD+A Y++KGK ++ KGP +
Sbjct: 118 SIGDMAKKLGEMWINYSDREKQPYITKAADLKEKYEKDVADYKSKGKFDSA-KGPTKIAW 176
Query: 181 SK-KKNEPEDEEEEEEEEDEDEEEE 204
K K+ + EDEEEEEEEE++ EE E
Sbjct: 177 KKVKEKDKEDEEEEEEEEEKKEEGE 201
>gi|169216609 PREDICTED: hypothetical protein LOC203510 [Homo
sapiens]
Length = 201
Score = 262 bits (670), Expect = 1e-70
Identities = 133/205 (64%), Positives = 159/205 (77%), Gaps = 5/205 (2%)
Query: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
M +GD KP+GKMS+YAFF QTCREEHKKK+P+ VNF EFSKKCSE+ KTMS KEK+KF
Sbjct: 1 MAEGDHKKPKGKMSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKF 60
Query: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
++MAK DK YD+EMK+ P +G GKKKDPNA KRP S FFLFCSE PKIKS +PG+
Sbjct: 61 DEMAKVDKVHYDQEMKDNGPVEG---GKKKDPNALKRPLSGFFLFCSEFHPKIKSTNPGI 117
Query: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
SIGD AKKLGEMW S ++KQPY KAA LKEKYEKD+A Y++KGK ++ KGP +
Sbjct: 118 SIGDMAKKLGEMWINYSDREKQPYITKAADLKEKYEKDVADYKSKGKFDSA-KGPTKIAW 176
Query: 181 SK-KKNEPEDEEEEEEEEDEDEEEE 204
K K+ + EDEEEEEEEE++ EE E
Sbjct: 177 KKVKEKDKEDEEEEEEEEEKKEEGE 201
>gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 488
Score = 259 bits (662), Expect = 1e-69
Identities = 126/182 (69%), Positives = 146/182 (80%), Gaps = 7/182 (3%)
Query: 35 SVNFAEFSKKCSERWKTMSAKEKSKF-------EDMAKSDKARYDREMKNYVPPKGDKKG 87
SVNF+EFSKKCSERWK MSAKEK KF EDMAK+DKA Y REMK Y+PPKG+ K
Sbjct: 164 SVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223
Query: 88 KKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQK 147
K KDPNAPKRPPSAFFL+ SE+ PKIK E PGLS GD AKKLGEMW+ +A DKQPYE++
Sbjct: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283
Query: 148 AAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEEEDED 207
+AKLKEKYEKDIAAYRAKGK +A G + SKKK E E+ EE+EE+E+E+++EEDED
Sbjct: 284 SAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDED 343
Query: 208 EE 209
EE
Sbjct: 344 EE 345
Score = 51.2 bits (121), Expect = 6e-07
Identities = 46/205 (22%), Positives = 77/205 (37%), Gaps = 79/205 (38%)
Query: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
DPN P+ S AFF+ K K ++F + +KK E W +A +K +E +
Sbjct: 227 DPNAPKRPPS--AFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRS 284
Query: 65 KSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGD 124
K +Y++++ Y + K +H + G
Sbjct: 285 AKLKEKYEKDIAAY---------------------------------RAKGKHDAANNGV 311
Query: 125 TAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKK 184
KAAK K+K E++ + +
Sbjct: 312 V---------------------KAAKSKKKKEEE-----------------------ENE 327
Query: 185 NEPEDEEEEEEEEDEDEEEEDEDEE 209
+ EDEEEE++EEDEDEE+++++EE
Sbjct: 328 EDEEDEEEEKDEEDEDEEDDEDEEE 352
>gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 487
Score = 259 bits (662), Expect = 1e-69
Identities = 126/182 (69%), Positives = 146/182 (80%), Gaps = 7/182 (3%)
Query: 35 SVNFAEFSKKCSERWKTMSAKEKSKF-------EDMAKSDKARYDREMKNYVPPKGDKKG 87
SVNF+EFSKKCSERWK MSAKEK KF EDMAK+DKA Y REMK Y+PPKG+ K
Sbjct: 164 SVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223
Query: 88 KKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQK 147
K KDPNAPKRPPSAFFL+ SE+ PKIK E PGLS GD AKKLGEMW+ +A DKQPYE++
Sbjct: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283
Query: 148 AAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEEEDED 207
+AKLKEKYEKDIAAYRAKGK +A G + SKKK E E+ EE+EE+E+E+++EEDED
Sbjct: 284 SAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDED 343
Query: 208 EE 209
EE
Sbjct: 344 EE 345
Score = 50.1 bits (118), Expect = 1e-06
Identities = 49/205 (23%), Positives = 76/205 (37%), Gaps = 80/205 (39%)
Query: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
DPN P+ S AFF+ K K ++F + +KK E W +A +K +E +
Sbjct: 227 DPNAPKRPPS--AFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRS 284
Query: 65 KSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGD 124
K +Y++++ Y + K +H + G
Sbjct: 285 AKLKEKYEKDIAAY---------------------------------RAKGKHDAANNGV 311
Query: 125 TAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKK 184
KAAK K+K E++ + +
Sbjct: 312 V---------------------KAAKSKKKKEEE-----------------------ENE 327
Query: 185 NEPEDEEEEEEEEDEDEEEEDEDEE 209
+ EDEEEE++EEDED EE+DEDEE
Sbjct: 328 EDEEDEEEEKDEEDED-EEDDEDEE 351
>gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 486
Score = 257 bits (657), Expect = 4e-69
Identities = 128/186 (68%), Positives = 147/186 (79%), Gaps = 11/186 (5%)
Query: 35 SVNFAEFSKKCSERWKTMSAKEKSKF-------EDMAKSDKARYDREMKNYVPPKGDKKG 87
SVNF+EFSKKCSERWK MSAKEK KF EDMAK+DKA Y REMK Y+PPKG+ K
Sbjct: 164 SVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223
Query: 88 KKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQK 147
K KDPNAPKRPPSAFFL+ SE+ PKIK E PGLS GD AKKLGEMW+ +A DKQPYE++
Sbjct: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283
Query: 148 AAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNE----PEDEEEEEEEEDEDEEE 203
+AKLKEKYEKDIAAYRAKGK +A G + SKKK E EDEE+EEEE+DEDE+E
Sbjct: 284 SAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEDEDE 343
Query: 204 EDEDEE 209
ED+++E
Sbjct: 344 EDDEDE 349
Score = 47.8 bits (112), Expect = 7e-06
Identities = 48/205 (23%), Positives = 75/205 (36%), Gaps = 81/205 (39%)
Query: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
DPN P+ S AFF+ K K ++F + +KK E W +A +K +E +
Sbjct: 227 DPNAPKRPPS--AFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRS 284
Query: 65 KSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGD 124
K +Y++++ Y + K +H + G
Sbjct: 285 AKLKEKYEKDIAAY---------------------------------RAKGKHDAANNGV 311
Query: 125 TAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKK 184
KAAK K+K E++ +
Sbjct: 312 V---------------------KAAKSKKKKEEE------------------------EN 326
Query: 185 NEPEDEEEEEEEEDEDEEEEDEDEE 209
E E++EEEE++EDED EE+DEDEE
Sbjct: 327 EEDEEDEEEEKDEDED-EEDDEDEE 350
>gi|169168462 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 252 bits (643), Expect = 2e-67
Identities = 130/192 (67%), Positives = 148/192 (77%), Gaps = 8/192 (4%)
Query: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
M KGDP KP+GKMS+Y FFVQTCREE KKK+P VNFAEFSKKCSERWKTMS KEKSKF
Sbjct: 1 MAKGDPKKPKGKMSAYVFFVQTCREECKKKNP---VNFAEFSKKCSERWKTMSGKEKSKF 57
Query: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
++MAK+DK DREMK P KG KK KKDP+APKRPPS FFLF SE RPKIKS +PG+
Sbjct: 58 DEMAKTDKVHCDREMKG--PAKGGKK--KKDPSAPKRPPSGFFLFSSEIRPKIKSTNPGI 113
Query: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
SIGD AKKLGEMW+ + +KQPY K AKLKEKYEKD+A ++KGK + G K P +
Sbjct: 114 SIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSKSKGKFD-GSKRPAKVAW 172
Query: 181 SKKKNEPEDEEE 192
K + E EDEEE
Sbjct: 173 KKVEEEDEDEEE 184
>gi|169168166 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 252 bits (643), Expect = 2e-67
Identities = 130/192 (67%), Positives = 148/192 (77%), Gaps = 8/192 (4%)
Query: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
M KGDP KP+GKMS+Y FFVQTCREE KKK+P VNFAEFSKKCSERWKTMS KEKSKF
Sbjct: 1 MAKGDPKKPKGKMSAYVFFVQTCREECKKKNP---VNFAEFSKKCSERWKTMSGKEKSKF 57
Query: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
++MAK+DK DREMK P KG KK KKDP+APKRPPS FFLF SE RPKIKS +PG+
Sbjct: 58 DEMAKTDKVHCDREMKG--PAKGGKK--KKDPSAPKRPPSGFFLFSSEIRPKIKSTNPGI 113
Query: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
SIGD AKKLGEMW+ + +KQPY K AKLKEKYEKD+A ++KGK + G K P +
Sbjct: 114 SIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSKSKGKFD-GSKRPAKVAW 172
Query: 181 SKKKNEPEDEEE 192
K + E EDEEE
Sbjct: 173 KKVEEEDEDEEE 184
>gi|113416897 PREDICTED: similar to high mobility group box 3
isoform 1 [Homo sapiens]
Length = 201
Score = 252 bits (643), Expect = 2e-67
Identities = 130/192 (67%), Positives = 148/192 (77%), Gaps = 8/192 (4%)
Query: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
M KGDP KP+GKMS+Y FFVQTCREE KKK+P VNFAEFSKKCSERWKTMS KEKSKF
Sbjct: 1 MAKGDPKKPKGKMSAYVFFVQTCREECKKKNP---VNFAEFSKKCSERWKTMSGKEKSKF 57
Query: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
++MAK+DK DREMK P KG KK KKDP+APKRPPS FFLF SE RPKIKS +PG+
Sbjct: 58 DEMAKTDKVHCDREMKG--PAKGGKK--KKDPSAPKRPPSGFFLFSSEIRPKIKSTNPGI 113
Query: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
SIGD AKKLGEMW+ + +KQPY K AKLKEKYEKD+A ++KGK + G K P +
Sbjct: 114 SIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSKSKGKFD-GSKRPAKVAW 172
Query: 181 SKKKNEPEDEEE 192
K + E EDEEE
Sbjct: 173 KKVEEEDEDEEE 184
>gi|239742753 PREDICTED: similar to high mobility group box 3
isoform 2 [Homo sapiens]
Length = 183
Score = 195 bits (496), Expect = 2e-50
Identities = 101/153 (66%), Positives = 116/153 (75%), Gaps = 5/153 (3%)
Query: 40 EFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPP 99
EFSKKCSERWKTMS KEKSKF++MAK+DK DREMK P KG KK KKDP+APKRPP
Sbjct: 19 EFSKKCSERWKTMSGKEKSKFDEMAKTDKVHCDREMKG--PAKGGKK--KKDPSAPKRPP 74
Query: 100 SAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDI 159
S FFLF SE RPKIKS +PG+SIGD AKKLGEMW+ + +KQPY K AKLKEKYEKD+
Sbjct: 75 SGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKYEKDV 134
Query: 160 AAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEE 192
A ++KGK + G K P + K + E EDEEE
Sbjct: 135 ADSKSKGKFD-GSKRPAKVAWKKVEEEDEDEEE 166
Score = 37.0 bits (84), Expect = 0.012
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
K DP+ P+ S + F R + K +P S+ + +KK E W ++ EK +
Sbjct: 64 KKDPSAPKRPPSGFFLFSSEIRPKIKSTNPGISIG--DVAKKLGEMWNNLNDSEKQPYIT 121
Query: 63 MAKSDKARYDREMKNYVPPKGDKKGKKK 90
K +Y++++ + KG G K+
Sbjct: 122 KTAKLKEKYEKDVAD-SKSKGKFDGSKR 148
>gi|57232750 HMG2 like isoform 1 [Homo sapiens]
Length = 186
Score = 160 bits (405), Expect = 7e-40
Identities = 75/163 (46%), Positives = 109/163 (66%), Gaps = 2/163 (1%)
Query: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
MGK KP+ +SSY F+ R + K++ P++ V F EFS+KCSE+W+++S EK+K+
Sbjct: 1 MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY 60
Query: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
E +AK DKARY EM NYV + KK +K+DP P+RPPS+F LFC +H ++K E+P
Sbjct: 61 EALAKLDKARYQEEMMNYVGKR--KKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNW 118
Query: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYR 163
S+ AK G+MWS + +K PYEQ+ A L+ KY +++ YR
Sbjct: 119 SVVQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYR 161
Score = 41.2 bits (95), Expect = 6e-04
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 95 PKRPPSAFFLFCSEHRPKIKSEHPGLSIG--DTAKKLGEMWSEQSAKDKQPYEQKAAKLK 152
PK S++ F +R K K + P +G + ++K E W S +K YE A K
Sbjct: 9 PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
Query: 153 EKYEKDIAAYRAKGKSEAGKKGPGRP 178
+Y++++ Y K K K+ P P
Sbjct: 69 ARYQEEMMNYVGKRKKRR-KRDPQEP 93
>gi|239752318 PREDICTED: similar to hCG1647425 [Homo sapiens]
Length = 214
Score = 154 bits (390), Expect = 4e-38
Identities = 78/124 (62%), Positives = 90/124 (72%), Gaps = 1/124 (0%)
Query: 65 KSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGD 124
K D A Y+REMK Y+PPK + K K +DPNAPK PP AFF+F SE PKIK EHPGLSI D
Sbjct: 34 KVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISD 92
Query: 125 TAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKK 184
AKKLGEMW+ + DK PYE+KA KLKEKYEKDIAA+ KGK +A KKG + KKK
Sbjct: 93 VAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 152
Query: 185 NEPE 188
E +
Sbjct: 153 KEED 156
Score = 38.5 bits (88), Expect = 0.004
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 5 DPNKPRGKMSSYAFFVQTCREEHK-KKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDM 63
DPN P K AFF+ + + K K+HP S++ + +KK E W ++ +K +E
Sbjct: 60 DPNAP--KSPPLAFFMFSSEDCPKIKEHPGLSIS--DVAKKLGEMWNYIAEDDKHPYEKK 115
Query: 64 AKSDKARYDREMKNY---VPPKGDKKGKKKDPNAPKR 97
A K +Y++++ + P KKG K K+
Sbjct: 116 AVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 152
>gi|239746826 PREDICTED: similar to hCG1647425 [Homo sapiens]
Length = 214
Score = 154 bits (390), Expect = 4e-38
Identities = 78/124 (62%), Positives = 90/124 (72%), Gaps = 1/124 (0%)
Query: 65 KSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGD 124
K D A Y+REMK Y+PPK + K K +DPNAPK PP AFF+F SE PKIK EHPGLSI D
Sbjct: 34 KVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISD 92
Query: 125 TAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKK 184
AKKLGEMW+ + DK PYE+KA KLKEKYEKDIAA+ KGK +A KKG + KKK
Sbjct: 93 VAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 152
Query: 185 NEPE 188
E +
Sbjct: 153 KEED 156
Score = 38.5 bits (88), Expect = 0.004
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 5 DPNKPRGKMSSYAFFVQTCREEHK-KKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDM 63
DPN P K AFF+ + + K K+HP S++ + +KK E W ++ +K +E
Sbjct: 60 DPNAP--KSPPLAFFMFSSEDCPKIKEHPGLSIS--DVAKKLGEMWNYIAEDDKHPYEKK 115
Query: 64 AKSDKARYDREMKNY---VPPKGDKKGKKKDPNAPKR 97
A K +Y++++ + P KKG K K+
Sbjct: 116 AVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 152
>gi|239757817 PREDICTED: similar to hCG1647425 [Homo sapiens]
Length = 227
Score = 129 bits (325), Expect = 1e-30
Identities = 66/107 (61%), Positives = 77/107 (71%), Gaps = 1/107 (0%)
Query: 82 KGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDK 141
+ + K K +DPNAPK PP AFF+F SE PKIK EHPGLSI D AKKLGEMW+ + DK
Sbjct: 78 RAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISDVAKKLGEMWNYIAEDDK 136
Query: 142 QPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPE 188
PYE+KA KLKEKYEKDIAA+ KGK +A KKG + KKK E +
Sbjct: 137 HPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKKEED 183
Score = 38.5 bits (88), Expect = 0.004
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 5 DPNKPRGKMSSYAFFVQTCREEHK-KKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDM 63
DPN P K AFF+ + + K K+HP S++ + +KK E W ++ +K +E
Sbjct: 87 DPNAP--KSPPLAFFMFSSEDCPKIKEHPGLSIS--DVAKKLGEMWNYIAEDDKHPYEKK 142
Query: 64 AKSDKARYDREMKNY---VPPKGDKKGKKKDPNAPKR 97
A K +Y++++ + P KKG K K+
Sbjct: 143 AVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 179
>gi|4507241 structure specific recognition protein 1 [Homo sapiens]
Length = 709
Score = 92.8 bits (229), Expect = 2e-19
Identities = 59/170 (34%), Positives = 92/170 (54%), Gaps = 16/170 (9%)
Query: 33 DSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSD--------KARYDREMKNYVPPKGD 84
D S N E + +E + + ++ S E + D KA+ ++ K+ P
Sbjct: 479 DESFNPGEEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRKKPVEV 538
Query: 85 KKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPY 144
KKGK DPNAPKRP SA+ L+ + R KIKS+HPG+SI D +KK GE+W S + K+ +
Sbjct: 539 KKGK--DPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEW 596
Query: 145 EQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEE 194
++KA + YEK + Y G+ E+ K+ SKKK + + + E++
Sbjct: 597 DRKAEDARRDYEKAMKEYEG-GRGESSKRDK-----SKKKKKVKVKMEKK 640
Score = 65.1 bits (157), Expect = 4e-11
Identities = 49/191 (25%), Positives = 81/191 (42%), Gaps = 42/191 (21%)
Query: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
DPN P+ MS+Y ++ RE+ K HP S+ + SKK E WK MS ++K +++ A
Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHPGISIT--DLSKKAGEIWKGMSKEKKEEWDRKA 600
Query: 65 KSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIG 123
+ + Y++ MK Y +G+ K+D + K+ + K+K E S G
Sbjct: 601 EDARRDYEKAMKEYEGGRGE--SSKRDKSKKKK------------KVKVKMEKKSTPSRG 646
Query: 124 DTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKK 183
++K SE ++++K + + G KK
Sbjct: 647 SSSKSSSRQLSE-------------------------SFKSKEFVSSDESSSGENKSKKK 681
Query: 184 KNEPEDEEEEE 194
+ ED EEEE
Sbjct: 682 RRRSEDSEEEE 692
>gi|57232748 HMG2 like isoform 2 [Homo sapiens]
Length = 112
Score = 87.8 bits (216), Expect = 6e-18
Identities = 40/89 (44%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
Query: 75 MKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWS 134
M NYV + KK +K+DP P+RPPS+F LFC +H ++K E+P S+ AK G+MWS
Sbjct: 1 MMNYVGKR--KKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWS 58
Query: 135 EQSAKDKQPYEQKAAKLKEKYEKDIAAYR 163
+ +K PYEQ+ A L+ KY +++ YR
Sbjct: 59 TATDLEKHPYEQRVALLRAKYFEELELYR 87
Score = 40.8 bits (94), Expect = 8e-04
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
K DP +PR SS+ F Q + K+++P+ SV + +K + W T + EK +E
Sbjct: 13 KRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSV--VQVAKATGKMWSTATDLEKHPYEQ 70
Query: 63 MAKSDKARYDREMKNY 78
+A+Y E++ Y
Sbjct: 71 RVALLRAKYFEELELY 86
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 78.6 bits (192), Expect = 4e-15
Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 22/180 (12%)
Query: 49 WKTMSAKEKSKFEDMAKSDKARYDREMKNY-VPPKGDKKGKK-KDPNAPKRPP-SAFFLF 105
W M KEK + A D+ RY+RE+ PP KK K PK+PP + + F
Sbjct: 482 WNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKF 541
Query: 106 CSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYE--------- 156
E + H L + + ++G W S K+ Y++ A + +++Y+
Sbjct: 542 SQELLSNGELNH--LPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQKQYKVHLDLWVKS 599
Query: 157 ---KDIAAYRA----KGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEEEDEDEE 209
+D AAY+ K KS +GP P S+ + + E EE++EEDED+E+EDE+EE
Sbjct: 600 LSPQDRAAYKEYISNKRKSMTKLRGPN-PKSSRTTLQSKSESEEDDEEDEDDEDEDEEEE 658
Score = 65.5 bits (158), Expect = 3e-11
Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 34/163 (20%)
Query: 45 CSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYV------------------------- 79
CS++WK +S KEK + K Y+ E+ ++
Sbjct: 291 CSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQA 350
Query: 80 ----PPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSE 135
K ++G K PKRP SA F+F E R +++ E P LS + + L MW++
Sbjct: 351 TSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWND 410
Query: 136 QSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRP 178
S K K Y+ + A LK + E+ + G+ E K P P
Sbjct: 411 LSEKKKAKYKAREAALKAQSER-----KPGGEREERGKLPESP 448
Score = 60.1 bits (144), Expect = 1e-09
Identities = 46/195 (23%), Positives = 94/195 (48%), Gaps = 28/195 (14%)
Query: 2 GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFE 61
GKG KP+ +S+ F + R + +++ P+ S + E ++ + W +S K+K+K++
Sbjct: 363 GKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSES--ELTRLLARMWNDLSEKKKAKYK 420
Query: 62 DMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLS 121
+ KA+ +R+ P G+++ + K P +PKR + + + ++
Sbjct: 421 AREAALKAQSERK------PGGEREERGKLPESPKRAEEIW-------QQSVIGDYLARF 467
Query: 122 IGDTAKKLGEM---WSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRP 178
D K L M W+ K+K + +KAA+ +++YE++++ RA P
Sbjct: 468 KNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRA----------PPAA 517
Query: 179 TGSKKKNEPEDEEEE 193
T S KK + + E ++
Sbjct: 518 TNSSKKMKFQGEPKK 532
Score = 56.2 bits (134), Expect = 2e-08
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 16/169 (9%)
Query: 29 KKHPD-SSVNFAEFS-KKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKK 86
+ H D V F +FS C +W +S E KF + + + +KN P KG K
Sbjct: 50 ESHMDWEKVAFKDFSGDMCKLKWVEIS-NEVRKFRTLTELILDAQEH-VKN--PYKGKKL 105
Query: 87 GKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQ 146
KK P+ PK+P + +F F E R K HP +S D K L + + E K K Y Q
Sbjct: 106 --KKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQ 163
Query: 147 KAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEE 195
+ K+++E+++A +R + P +KK + PE + ++
Sbjct: 164 DFQREKQEFERNLARFR--------EDHPDLIQNAKKSDIPEKPKTPQQ 204
Score = 38.9 bits (89), Expect = 0.003
Identities = 60/302 (19%), Positives = 106/302 (35%), Gaps = 104/302 (34%)
Query: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF-- 60
K P+ P+ ++ Y F R ++ K HP+ S + +K S+++K + K+K K+
Sbjct: 106 KKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSN--LDLTKILSKKYKELPEKKKMKYIQ 163
Query: 61 ------------------------EDMAKSD---------------------KARYDREM 75
++ KSD K R D M
Sbjct: 164 DFQREKQEFERNLARFREDHPDLIQNAKKSDIPEKPKTPQQLWYTHEKKVYLKVRPDEIM 223
Query: 76 KNYVPP-----------------KGDKKGKKKDPNAP-KRPPSAFFLFCSEHRPKIKSEH 117
++Y+ K +++ K K P K PP+++ L+C+E +K
Sbjct: 224 RDYIQKHPELNISEEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAELMANMK--- 280
Query: 118 PGLSIGDTAKKL--GEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY------------- 162
+ T + + + W S K+K Y +K + K+ YE ++ +
Sbjct: 281 ---DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVL 337
Query: 163 ---------RAKGKSEAGKK--GPGRPTGSKKKNEPED-----EEEEEEEEDEDEEEEDE 206
+ + S A KK G GS+K P EE+ + E+ E E
Sbjct: 338 GEEKMLNINKKQATSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSE 397
Query: 207 DE 208
E
Sbjct: 398 SE 399
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 78.6 bits (192), Expect = 4e-15
Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 22/180 (12%)
Query: 49 WKTMSAKEKSKFEDMAKSDKARYDREMKNY-VPPKGDKKGKK-KDPNAPKRPP-SAFFLF 105
W M KEK + A D+ RY+RE+ PP KK K PK+PP + + F
Sbjct: 482 WNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKF 541
Query: 106 CSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYE--------- 156
E + H L + + ++G W S K+ Y++ A + +++Y+
Sbjct: 542 SQELLSNGELNH--LPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQKQYKVHLDLWVKS 599
Query: 157 ---KDIAAYRA----KGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEEEDEDEE 209
+D AAY+ K KS +GP P S+ + + E EE++EEDED+E+EDE+EE
Sbjct: 600 LSPQDRAAYKEYISNKRKSMTKLRGPN-PKSSRTTLQSKSESEEDDEEDEDDEDEDEEEE 658
Score = 65.5 bits (158), Expect = 3e-11
Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 34/163 (20%)
Query: 45 CSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYV------------------------- 79
CS++WK +S KEK + K Y+ E+ ++
Sbjct: 291 CSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQA 350
Query: 80 ----PPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSE 135
K ++G K PKRP SA F+F E R +++ E P LS + + L MW++
Sbjct: 351 TSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWND 410
Query: 136 QSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRP 178
S K K Y+ + A LK + E+ + G+ E K P P
Sbjct: 411 LSEKKKAKYKAREAALKAQSER-----KPGGEREERGKLPESP 448
Score = 60.1 bits (144), Expect = 1e-09
Identities = 46/195 (23%), Positives = 94/195 (48%), Gaps = 28/195 (14%)
Query: 2 GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFE 61
GKG KP+ +S+ F + R + +++ P+ S + E ++ + W +S K+K+K++
Sbjct: 363 GKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSES--ELTRLLARMWNDLSEKKKAKYK 420
Query: 62 DMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLS 121
+ KA+ +R+ P G+++ + K P +PKR + + + ++
Sbjct: 421 AREAALKAQSERK------PGGEREERGKLPESPKRAEEIW-------QQSVIGDYLARF 467
Query: 122 IGDTAKKLGEM---WSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRP 178
D K L M W+ K+K + +KAA+ +++YE++++ RA P
Sbjct: 468 KNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRA----------PPAA 517
Query: 179 TGSKKKNEPEDEEEE 193
T S KK + + E ++
Sbjct: 518 TNSSKKMKFQGEPKK 532
Score = 56.2 bits (134), Expect = 2e-08
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 16/169 (9%)
Query: 29 KKHPD-SSVNFAEFS-KKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKK 86
+ H D V F +FS C +W +S E KF + + + +KN P KG K
Sbjct: 50 ESHMDWEKVAFKDFSGDMCKLKWVEIS-NEVRKFRTLTELILDAQEH-VKN--PYKGKKL 105
Query: 87 GKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQ 146
KK P+ PK+P + +F F E R K HP +S D K L + + E K K Y Q
Sbjct: 106 --KKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQ 163
Query: 147 KAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEE 195
+ K+++E+++A +R + P +KK + PE + ++
Sbjct: 164 DFQREKQEFERNLARFR--------EDHPDLIQNAKKSDIPEKPKTPQQ 204
Score = 38.9 bits (89), Expect = 0.003
Identities = 60/302 (19%), Positives = 106/302 (35%), Gaps = 104/302 (34%)
Query: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF-- 60
K P+ P+ ++ Y F R ++ K HP+ S + +K S+++K + K+K K+
Sbjct: 106 KKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSN--LDLTKILSKKYKELPEKKKMKYIQ 163
Query: 61 ------------------------EDMAKSD---------------------KARYDREM 75
++ KSD K R D M
Sbjct: 164 DFQREKQEFERNLARFREDHPDLIQNAKKSDIPEKPKTPQQLWYTHEKKVYLKVRPDEIM 223
Query: 76 KNYVPP-----------------KGDKKGKKKDPNAP-KRPPSAFFLFCSEHRPKIKSEH 117
++Y+ K +++ K K P K PP+++ L+C+E +K
Sbjct: 224 RDYIQKHPELNISEEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAELMANMK--- 280
Query: 118 PGLSIGDTAKKL--GEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAY------------- 162
+ T + + + W S K+K Y +K + K+ YE ++ +
Sbjct: 281 ---DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVL 337
Query: 163 ---------RAKGKSEAGKK--GPGRPTGSKKKNEPED-----EEEEEEEEDEDEEEEDE 206
+ + S A KK G GS+K P EE+ + E+ E E
Sbjct: 338 GEEKMLNINKKQATSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSE 397
Query: 207 DE 208
E
Sbjct: 398 SE 399
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.303 0.125 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,650,036
Number of Sequences: 37866
Number of extensions: 585861
Number of successful extensions: 30581
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 311
Number of HSP's that attempted gapping in prelim test: 6718
Number of HSP's gapped (non-prelim): 9924
length of query: 209
length of database: 18,247,518
effective HSP length: 98
effective length of query: 111
effective length of database: 14,536,650
effective search space: 1613568150
effective search space used: 1613568150
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.