Guide to the Human Genome
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Name: C19orf69 Sequence: fasta or formatted (130aa) NCBI GI: 194473673
Description:

hypothetical protein LOC100170765

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2          8           1
 C cysteine            2.3          3           1
 D aspartate           3.8          5           1
 E glutamate          17.7         23           5
 F phenylalanine       0.8          1           1
 G glycine             8.5         11           2
 H histidine           1.5          2           1
 I isoleucine          3.1          4           1
 K lysine              1.5          2           1
 L leucine            14.6         19           2
 M methionine          3.1          4           2
 N asparagine          1.5          2           1
 P proline             9.2         12           3
 Q glutamine           6.9          9           1
 R arginine            6.2          8           2
 S serine              3.8          5           2
 T threonine           3.1          4           1
 V valine              4.6          6           1
 W tryptophan          1.5          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC100170765 
PELP1                 0.062   proline, glutamic acid and leucine rich protein 1 [...
MYST4                 0.062   MYST histone acetyltransferase (monocytic leukemia)...
LOC100133758          0.058   PREDICTED: hypothetical protein, partial 
MYT1                  0.054   myelin transcription factor 1 
LOC728792             0.054   PREDICTED: hypothetical protein 
HAP1                  0.050   huntingtin-associated protein 1 isoform 4 
HAP1                  0.050   huntingtin-associated protein 1 isoform 3 
HAP1                  0.050   huntingtin-associated protein 1 isoform 2 
EHMT2                 0.050   euchromatic histone-lysine N-methyltransferase 2 is...
EHMT2                 0.050   euchromatic histone-lysine N-methyltransferase 2 is...
ZFHX3                 0.050   AT-binding transcription factor 1 
POLR3GL               0.046   polymerase (RNA) III (DNA directed) polypeptide G (3...
GRWD1                 0.046   glutamate-rich WD repeat containing 1 
PRKCSH                0.046   protein kinase C substrate 80K-H isoform 1 
TRERF1                0.046   transcriptional regulating factor 1 
RANGAP1               0.046   Ran GTPase activating protein 1 
CHIC1                 0.046   cysteine-rich hydrophobic domain 1 
ZFHX2                 0.041   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.041   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.041   PREDICTED: zinc finger homeobox 2 
TTBK1                 0.041   tau tubulin kinase 1 
ANAPC2                0.041   anaphase-promoting complex subunit 2 
SLC24A1               0.041   solute carrier family 24 (sodium/potassium/calcium ex...
EIF5B                 0.041   eukaryotic translation initiation factor 5B 
FAM9A                 0.041   family with sequence similarity 9, member A 
SHROOM4               0.037   shroom family member 4 
GOLGB1                0.037   golgi autoantigen, golgin subfamily b, macrogolgin ...
HRC                   0.033   histidine rich calcium binding protein precursor [Hom...
PODXL2                0.033   podocalyxin-like 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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