Guide to the Human Genome
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Name: HAP1 Sequence: fasta or formatted (594aa) NCBI GI: 120431745
Description:

huntingtin-associated protein 1 isoform 4

Referenced in:

Additional Brain Proteins

Other entries for this name:
alt prot [619aa] huntingtin-associated protein 1 isoform 2
alt prot [602aa] huntingtin-associated protein 1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         59           2
 C cysteine            2.0         12           2
 D aspartate           4.0         24           1
 E glutamate          14.8         88           7
 F phenylalanine       2.2         13           1
 G glycine             6.1         36           1
 H histidine           1.5          9           2
 I isoleucine          1.7         10           1
 K lysine              3.0         18           2
 L leucine            10.9         65           2
 M methionine          2.9         17           1
 N asparagine          2.0         12           1
 P proline             5.9         35           3
 Q glutamine           6.6         39           3
 R arginine            8.1         48           2
 S serine              6.9         41           2
 T threonine           3.5         21           1
 V valine              4.9         29           2
 W tryptophan          1.0          6           1
 Y tyrosine            2.0         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   huntingtin-associated protein 1 isoform 4 
HAP1                  0.994   huntingtin-associated protein 1 isoform 3 
HAP1                  0.988   huntingtin-associated protein 1 isoform 2 
TRAK1                 0.092   OGT(O-Glc-NAc transferase)-interacting protein 106 K...
TRAK1                 0.088   OGT(O-Glc-NAc transferase)-interacting protein 106 ...
TRAK2                 0.078   trafficking protein, kinesin binding 2 
CCDC64                0.035   coiled-coil domain containing 64 
LOC100133758          0.033   PREDICTED: hypothetical protein, partial 
LOC645202             0.029   PREDICTED: hypothetical protein LOC645202 
KIF21A                0.029   kinesin family member 21A 
ZNF853                0.029   zinc finger protein 853 
PELP1                 0.028   proline, glutamic acid and leucine rich protein 1 [...
PLEC1                 0.028   plectin 1 isoform 11 
PLEC1                 0.028   plectin 1 isoform 10 
PLEC1                 0.028   plectin 1 isoform 8 
PLEC1                 0.028   plectin 1 isoform 7 
PLEC1                 0.028   plectin 1 isoform 6 
PLEC1                 0.028   plectin 1 isoform 3 
PLEC1                 0.028   plectin 1 isoform 2 
PLEC1                 0.028   plectin 1 isoform 1 
MYST3                 0.028   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.028   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.028   MYST histone acetyltransferase (monocytic leukemia)...
LOC283685             0.027   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC100133220          0.027   PREDICTED: hypothetical protein 
LOC647042             0.027   PREDICTED: hypothetical protein isoform 1 
LOC283767             0.026   golgi autoantigen, golgin subfamily a-like 
TCHH                  0.026   trichohyalin 
MYH10                 0.026   myosin, heavy polypeptide 10, non-muscle 
TTBK1                 0.026   tau tubulin kinase 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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