Guide to the Human Genome
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Name: LOC729378 Sequence: fasta or formatted (186aa) NCBI GI: 113416881
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {186aa} PREDICTED: hypothetical protein
alt mRNA {186aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.1         28           2
 C cysteine            3.2          6           1
 D aspartate           2.7          5           1
 E glutamate           5.9         11           1
 F phenylalanine       0.0          0           0
 G glycine            12.9         24           2
 H histidine           1.1          2           1
 I isoleucine          0.5          1           1
 K lysine              2.7          5           1
 L leucine             9.7         18           1
 M methionine          1.1          2           1
 N asparagine          1.1          2           1
 P proline            11.3         21           2
 Q glutamine           2.2          4           1
 R arginine           12.9         24           2
 S serine              5.4         10           2
 T threonine           2.2          4           1
 V valine              7.0         13           2
 W tryptophan          1.6          3           1
 Y tyrosine            1.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729378             1.000   PREDICTED: hypothetical protein 
LOC729378             1.000   PREDICTED: hypothetical protein 
LOC100292088          0.042   PREDICTED: hypothetical protein XP_002346321 
LOC100287499          0.039   PREDICTED: hypothetical protein 
LOC100287499          0.039   PREDICTED: hypothetical protein XP_002343643 
TAF4                  0.036   TBP-associated factor 4 
ZDHHC18               0.033   zinc finger, DHHC-type containing 18 
WTIP                  0.033   Wilms tumor 1 interacting protein 
ZFPM1                 0.031   zinc finger protein, multitype 1 
LOC100287484          0.031   PREDICTED: hypothetical protein XP_002343105 
FOXQ1                 0.028   forkhead box Q1 
LOC100289661          0.028   PREDICTED: hypothetical protein 
LOC100289661          0.028   PREDICTED: hypothetical protein XP_002343723 
LOC100287104          0.028   PREDICTED: hypothetical protein XP_002343630 
GIPC3                 0.025   GIPC PDZ domain containing family, member 3 
LOC100291911          0.025   PREDICTED: similar to Putative uncharacterized prot...
LOC646509             0.025   PREDICTED: hypothetical protein 
VSX1                  0.025   visual system homeobox 1 isoform b 
VSX1                  0.025   visual system homeobox 1 isoform a 
SMR3A                 0.025   submaxillary gland androgen regulated protein 3 homo...
LOC100131426          0.025   PREDICTED: hypothetical protein 
LOC400236             0.025   PREDICTED: hypothetical protein 
LOC400236             0.025   PREDICTED: hypothetical protein 
LOC100131426          0.025   PREDICTED: hypothetical protein isoform 2 
LOC100131426          0.025   PREDICTED: hypothetical protein isoform 1 
KLF2                  0.025   Kruppel-like factor 
BTBD11                0.025   BTB (POZ) domain containing 11 isoform a 
C10orf91              0.025   hypothetical protein LOC170393 
LOC100293867          0.022   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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