Guide to the Human Genome
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Name: LOC100131426 Sequence: fasta or formatted (210aa) NCBI GI: 169165184
Description:

PREDICTED: hypothetical protein isoform 1

Not currently referenced in the text

Other entries for this name:
alt mRNA {210aa} PREDICTED: hypothetical protein
alt prot {210aa} PREDICTED: hypothetical protein
alt mRNA {210aa} PREDICTED: hypothetical protein isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         21           2
 C cysteine            2.9          6           2
 D aspartate           2.4          5           2
 E glutamate           5.7         12           2
 F phenylalanine       1.4          3           1
 G glycine            11.4         24           3
 H histidine           2.4          5           1
 I isoleucine          0.5          1           1
 K lysine              2.4          5           1
 L leucine            10.0         21           3
 M methionine          4.3          9           2
 N asparagine          1.4          3           1
 P proline            11.9         25           2
 Q glutamine           5.7         12           1
 R arginine            6.2         13           2
 S serine             12.4         26           2
 T threonine           2.9          6           1
 V valine              2.9          6           1
 W tryptophan          2.4          5           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein isoform 1 
LOC100131426          1.000   PREDICTED: hypothetical protein 
LOC100131426          1.000   PREDICTED: hypothetical protein isoform 2 
LOC100293867          0.995   PREDICTED: hypothetical protein 
LOC100290553          0.995   PREDICTED: hypothetical protein XP_002347706 
LOC100131426          0.995   PREDICTED: hypothetical protein 
LOC100287282          0.995   PREDICTED: hypothetical protein XP_002344162 
SYN1                  0.041   synapsin I isoform Ia 
SYN1                  0.041   synapsin I isoform Ib 
PRB2                  0.041   proline-rich protein BstNI subfamily 2 
COL1A1                0.036   alpha 1 type I collagen preproprotein 
COL3A1                0.036   collagen type III alpha 1 preproprotein 
SLC16A2               0.036   solute carrier family 16, member 2 
COL5A2                0.034   alpha 2 type V collagen preproprotein 
C17orf65              0.034   hypothetical protein LOC339201 
SYN2                  0.034   synapsin II isoform IIa 
ARID1A                0.029   AT rich interactive domain 1A isoform a 
ARID1A                0.029   AT rich interactive domain 1A isoform b 
COL2A1                0.029   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.029   collagen, type II, alpha 1 isoform 2 precursor [Hom...
LOC100130360          0.029   PREDICTED: hypothetical protein 
PRB1                  0.029   proline-rich protein BstNI subfamily 1 isoform 1 pre...
COL22A1               0.029   collagen, type XXII, alpha 1 
COL6A6                0.026   collagen type VI alpha 6 
LOC729986             0.026   PREDICTED: hypothetical protein 
LOC729986             0.026   PREDICTED: hypothetical protein 
LOC100288243          0.026   PREDICTED: hypothetical protein 
LOC729986             0.026   PREDICTED: hypothetical protein 
LOC100288243          0.026   PREDICTED: hypothetical protein XP_002342233 
LOC729986             0.026   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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