VSX1 27599

Name: VSX1	Sequence: fasta or formatted (239aa)		NCBI GI: 40806216
Description: visual system homeobox 1 isoform b		Referenced in: Homeobox and Related Proteins
Other entries for this name: alt prot [365aa] visual system homeobox 1 isoform a
Composition: Amino acid Percentage Count Longest homopolymer A alanine 10.5 25 3 C cysteine 1.7 4 1 D aspartate 5.4 13 1 E glutamate 5.9 14 2 F phenylalanine 2.9 7 1 G glycine 10.0 24 2 H histidine 1.7 4 1 I isoleucine 0.8 2 1 K lysine 3.3 8 2 L leucine 11.3 27 3 M methionine 0.8 2 1 N asparagine 0.8 2 1 P proline 12.6 30 3 Q glutamine 2.9 7 1 R arginine 8.4 20 2 S serine 10.5 25 2 T threonine 4.6 11 2 V valine 5.0 12 1 W tryptophan 0.0 0 0 Y tyrosine 0.8 2 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 visual system homeobox 1 isoform b VSX1 0.878 visual system homeobox 1 isoform a VSX2 0.199 visual system homeobox 2 PAX7 0.118 paired box 7 isoform 1 PAX7 0.118 paired box 7 isoform 2 PAX7 0.118 paired box 7 isoform 3 RAX 0.114 retina and anterior neural fold homeobox ALX1 0.114 cartilage paired-class homeoprotein 1 PAX3 0.114 paired box 3 isoform PAX3i PAX3 0.114 paired box 3 isoform PAX3g PAX3 0.114 paired box 3 isoform PAX3h PAX3 0.114 paired box 3 isoform PAX3e PAX3 0.114 paired box 3 isoform PAX3d PAX3 0.114 paired box 3 isoform PAX3 ALX4 0.114 aristaless-like homeobox 4 ALX3 0.111 aristaless-like homeobox 3 OTP 0.109 PREDICTED: orthopedia homeobox OTP 0.109 orthopedia homeobox PAX6 0.105 paired box gene 6 isoform a PAX6 0.105 paired box gene 6 isoform b PAX6 0.105 paired box gene 6 isoform a ARX 0.100 aristaless related homeobox RAX2 0.096 retina and anterior neural fold homeobox 2 PHOX2B 0.094 paired-like homeobox 2b PHOX2A 0.094 paired-like homeobox 2a CRX 0.090 cone-rod homeobox protein UNCX 0.090 UNC homeobox ISX 0.090 intestine-specific homeobox DMBX1 0.090 diencephalon/mesencephalon homeobox 1 isoform b [Hom... ESX1 0.090 extraembryonic, spermatogenesis, homeobox 1-like [Ho... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.