Guide to the Human Genome
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Name: GIPC3 Sequence: fasta or formatted (312aa) NCBI GI: 18959204
Description:

GIPC PDZ domain containing family, member 3

Referenced in:

PDZ Domain

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.9         37           3
 C cysteine            1.9          6           1
 D aspartate           3.8         12           2
 E glutamate          11.2         35           3
 F phenylalanine       4.5         14           1
 G glycine             7.7         24           2
 H histidine           1.6          5           1
 I isoleucine          5.8         18           2
 K lysine              5.1         16           2
 L leucine             6.7         21           2
 M methionine          1.9          6           1
 N asparagine          1.6          5           1
 P proline             5.8         18           3
 Q glutamine           2.2          7           1
 R arginine            7.7         24           1
 S serine              6.4         20           2
 T threonine           6.1         19           1
 V valine              6.4         20           2
 W tryptophan          0.3          1           1
 Y tyrosine            1.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GIPC PDZ domain containing family, member 3 
GIPC1                 0.618   regulator of G-protein signalling 19 interacting pro...
GIPC1                 0.618   regulator of G-protein signalling 19 interacting pro...
GIPC1                 0.618   regulator of G-protein signalling 19 interacting prot...
GIPC2                 0.528   PDZ domain protein GIPC2 
GIPC1                 0.492   regulator of G-protein signalling 19 interacting pro...
GIPC1                 0.492   regulator of G-protein signalling 19 interacting pro...
GIPC1                 0.492   regulator of G-protein signalling 19 interacting pro...
CASK                  0.039   calcium/calmodulin-dependent serine protein kinase ...
CASK                  0.030   calcium/calmodulin-dependent serine protein kinase ...
CASK                  0.030   calcium/calmodulin-dependent serine protein kinase ...
PDZD2                 0.029   PDZ domain containing 2 
MPDZ                  0.024   multiple PDZ domain protein 
MAGI1                 0.022   membrane associated guanylate kinase, WW and PDZ dom...
MAGI1                 0.022   membrane associated guanylate kinase, WW and PDZ dom...
MAGI1                 0.022   membrane associated guanylate kinase, WW and PDZ dom...
PPP1R9A               0.022   protein phosphatase 1, regulatory (inhibitor) subuni...
MAGI2                 0.020   membrane associated guanylate kinase, WW and PDZ dom...
GRIP1                 0.019   glutamate receptor interacting protein 1 
KLF16                 0.017   BTE-binding protein 4 
PPP1R9B               0.017   protein phosphatase 1, regulatory subunit 9B 
GRIP2                 0.017   glutamate receptor interacting protein 2 
LOC729378             0.015   PREDICTED: hypothetical protein 
LOC729378             0.015   PREDICTED: hypothetical protein 
LOC729378             0.015   PREDICTED: hypothetical protein 
INADL                 0.015   InaD-like 
DFNB31                0.015   CASK-interacting protein CIP98 isoform 1 
SCRIB                 0.015   scribble isoform b 
SCRIB                 0.015   scribble isoform a 
CNKSR3                0.015   CNKSR family member 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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