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Search of human proteins with 113415341
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113415341 PREDICTED: similar to hCG1811563 [Homo sapiens]
(322 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169165721 PREDICTED: similar to hCG1811563 [Homo sapiens] 679 0.0
gi|113415341 PREDICTED: similar to hCG1811563 [Homo sapiens] 679 0.0
gi|113414749 PREDICTED: similar to hCG1811563 [Homo sapiens] 672 0.0
gi|237820624 pleckstrin homology domain containing, family N mem... 31 1.3
gi|237820622 pleckstrin homology domain containing, family N mem... 31 1.3
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 31 1.3
gi|4507447 transcription factor AP-4 (activating enhancer bindin... 30 2.2
gi|167000400 gamma-aminobutyric acid (GABA) B receptor 1 isoform... 30 2.2
gi|11497612 gamma-aminobutyric acid (GABA) B receptor 1 isoform ... 30 2.2
gi|10835015 gamma-aminobutyric acid (GABA) B receptor 1 isoform ... 30 2.2
gi|169204928 PREDICTED: hypothetical protein [Homo sapiens] 30 2.2
gi|113423861 PREDICTED: hypothetical protein [Homo sapiens] 30 2.2
gi|113423437 PREDICTED: hypothetical protein [Homo sapiens] 30 2.2
gi|194097354 G1 to S phase transition 1 isoform 2 [Homo sapiens] 30 2.2
gi|194018520 G1 to S phase transition 1 isoform 1 [Homo sapiens] 30 2.2
gi|4504975 low density lipoprotein receptor precursor [Homo sapi... 30 2.9
gi|91208420 bassoon protein [Homo sapiens] 30 2.9
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 30 3.8
gi|187171277 DNA-directed DNA polymerase gamma [Homo sapiens] 30 3.8
gi|4505937 DNA-directed DNA polymerase gamma [Homo sapiens] 30 3.8
gi|239755589 PREDICTED: hypothetical protein [Homo sapiens] 30 3.8
gi|239752992 PREDICTED: hypothetical protein XP_002345322 [Homo ... 30 3.8
gi|239747550 PREDICTED: hypothetical protein XP_002347647 [Homo ... 30 3.8
gi|239741424 PREDICTED: hypothetical protein XP_002342197 [Homo ... 30 3.8
gi|169162878 PREDICTED: hypothetical protein [Homo sapiens] 30 3.8
gi|5902104 SRY (sex determining region Y)-box 10 [Homo sapiens] 30 3.8
gi|22749021 beta-1,3-N-acetylgalactosaminyltransferase 2 [Homo s... 30 3.8
gi|194239681 tubulin tyrosine ligase-like family, member 10 isof... 30 3.8
gi|37537554 hypothetical protein FLJ37538 [Homo sapiens] 30 3.8
gi|239750710 PREDICTED: hypothetical protein [Homo sapiens] 29 4.9
>gi|169165721 PREDICTED: similar to hCG1811563 [Homo sapiens]
Length = 322
Score = 679 bits (1752), Expect = 0.0
Identities = 322/322 (100%), Positives = 322/322 (100%)
Query: 1 MLILMVQCMTMLLNVPLHFSTLPSGREWATPGTLHILAFVSCLSPLECKLQRNCIRSTWL 60
MLILMVQCMTMLLNVPLHFSTLPSGREWATPGTLHILAFVSCLSPLECKLQRNCIRSTWL
Sbjct: 1 MLILMVQCMTMLLNVPLHFSTLPSGREWATPGTLHILAFVSCLSPLECKLQRNCIRSTWL 60
Query: 61 RRPRASRHTRTGICMGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQKPEMQL 120
RRPRASRHTRTGICMGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQKPEMQL
Sbjct: 61 RRPRASRHTRTGICMGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQKPEMQL 120
Query: 121 QGQREPERLTSHGSSLVPGPPDPPWSPQVDLHLICYNPDIRNRAREEGVLKGHSLSCWRG 180
QGQREPERLTSHGSSLVPGPPDPPWSPQVDLHLICYNPDIRNRAREEGVLKGHSLSCWRG
Sbjct: 121 QGQREPERLTSHGSSLVPGPPDPPWSPQVDLHLICYNPDIRNRAREEGVLKGHSLSCWRG 180
Query: 181 RGTRPPFLLRGSPARRLRLPAPHDLCGLGALSSVAAGLQAGACAENDCGRGSRAQHCTAR 240
RGTRPPFLLRGSPARRLRLPAPHDLCGLGALSSVAAGLQAGACAENDCGRGSRAQHCTAR
Sbjct: 181 RGTRPPFLLRGSPARRLRLPAPHDLCGLGALSSVAAGLQAGACAENDCGRGSRAQHCTAR 240
Query: 241 RPTADMWGDWVDRKTRRAFVAAGRDSLGSLNQARVGGDPVPVHRPASAQPGESTCAPWDR 300
RPTADMWGDWVDRKTRRAFVAAGRDSLGSLNQARVGGDPVPVHRPASAQPGESTCAPWDR
Sbjct: 241 RPTADMWGDWVDRKTRRAFVAAGRDSLGSLNQARVGGDPVPVHRPASAQPGESTCAPWDR 300
Query: 301 LGCFLALCLGGTCLVTTGLELL 322
LGCFLALCLGGTCLVTTGLELL
Sbjct: 301 LGCFLALCLGGTCLVTTGLELL 322
>gi|113415341 PREDICTED: similar to hCG1811563 [Homo sapiens]
Length = 322
Score = 679 bits (1752), Expect = 0.0
Identities = 322/322 (100%), Positives = 322/322 (100%)
Query: 1 MLILMVQCMTMLLNVPLHFSTLPSGREWATPGTLHILAFVSCLSPLECKLQRNCIRSTWL 60
MLILMVQCMTMLLNVPLHFSTLPSGREWATPGTLHILAFVSCLSPLECKLQRNCIRSTWL
Sbjct: 1 MLILMVQCMTMLLNVPLHFSTLPSGREWATPGTLHILAFVSCLSPLECKLQRNCIRSTWL 60
Query: 61 RRPRASRHTRTGICMGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQKPEMQL 120
RRPRASRHTRTGICMGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQKPEMQL
Sbjct: 61 RRPRASRHTRTGICMGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQKPEMQL 120
Query: 121 QGQREPERLTSHGSSLVPGPPDPPWSPQVDLHLICYNPDIRNRAREEGVLKGHSLSCWRG 180
QGQREPERLTSHGSSLVPGPPDPPWSPQVDLHLICYNPDIRNRAREEGVLKGHSLSCWRG
Sbjct: 121 QGQREPERLTSHGSSLVPGPPDPPWSPQVDLHLICYNPDIRNRAREEGVLKGHSLSCWRG 180
Query: 181 RGTRPPFLLRGSPARRLRLPAPHDLCGLGALSSVAAGLQAGACAENDCGRGSRAQHCTAR 240
RGTRPPFLLRGSPARRLRLPAPHDLCGLGALSSVAAGLQAGACAENDCGRGSRAQHCTAR
Sbjct: 181 RGTRPPFLLRGSPARRLRLPAPHDLCGLGALSSVAAGLQAGACAENDCGRGSRAQHCTAR 240
Query: 241 RPTADMWGDWVDRKTRRAFVAAGRDSLGSLNQARVGGDPVPVHRPASAQPGESTCAPWDR 300
RPTADMWGDWVDRKTRRAFVAAGRDSLGSLNQARVGGDPVPVHRPASAQPGESTCAPWDR
Sbjct: 241 RPTADMWGDWVDRKTRRAFVAAGRDSLGSLNQARVGGDPVPVHRPASAQPGESTCAPWDR 300
Query: 301 LGCFLALCLGGTCLVTTGLELL 322
LGCFLALCLGGTCLVTTGLELL
Sbjct: 301 LGCFLALCLGGTCLVTTGLELL 322
>gi|113414749 PREDICTED: similar to hCG1811563 [Homo sapiens]
Length = 322
Score = 672 bits (1735), Expect = 0.0
Identities = 320/322 (99%), Positives = 320/322 (99%)
Query: 1 MLILMVQCMTMLLNVPLHFSTLPSGREWATPGTLHILAFVSCLSPLECKLQRNCIRSTWL 60
MLILMVQCMTMLLNVPLHFSTLPSGREWATPGTLHILAFVSCLSPLECKLQRNCIRSTWL
Sbjct: 1 MLILMVQCMTMLLNVPLHFSTLPSGREWATPGTLHILAFVSCLSPLECKLQRNCIRSTWL 60
Query: 61 RRPRASRHTRTGICMGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQKPEMQL 120
RRPRASRHTRTG MGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQKPEMQL
Sbjct: 61 RRPRASRHTRTGTRMGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQKPEMQL 120
Query: 121 QGQREPERLTSHGSSLVPGPPDPPWSPQVDLHLICYNPDIRNRAREEGVLKGHSLSCWRG 180
QGQREPERLTSHGSSLVPGPPDPPWSPQVDLHLICYNPDIRNRAREEGVLKGHSLSCWRG
Sbjct: 121 QGQREPERLTSHGSSLVPGPPDPPWSPQVDLHLICYNPDIRNRAREEGVLKGHSLSCWRG 180
Query: 181 RGTRPPFLLRGSPARRLRLPAPHDLCGLGALSSVAAGLQAGACAENDCGRGSRAQHCTAR 240
RGTRPPFLLRGSPARRLRLPAPHDLCGLGALSSVAAGLQAGACAENDCGRGSRAQHCTAR
Sbjct: 181 RGTRPPFLLRGSPARRLRLPAPHDLCGLGALSSVAAGLQAGACAENDCGRGSRAQHCTAR 240
Query: 241 RPTADMWGDWVDRKTRRAFVAAGRDSLGSLNQARVGGDPVPVHRPASAQPGESTCAPWDR 300
RPTADMWGDWVDRKTRRAFVAAGRDSLGSLNQARVGGDPVPVHRPASAQPGESTCAPWDR
Sbjct: 241 RPTADMWGDWVDRKTRRAFVAAGRDSLGSLNQARVGGDPVPVHRPASAQPGESTCAPWDR 300
Query: 301 LGCFLALCLGGTCLVTTGLELL 322
LGCFLALCLGGTCLVTTGLELL
Sbjct: 301 LGCFLALCLGGTCLVTTGLELL 322
>gi|237820624 pleckstrin homology domain containing, family N member
1 isoform b [Homo sapiens]
Length = 576
Score = 31.2 bits (69), Expect = 1.3
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 63 PRASRHTRTGICMGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQKPEMQL-- 120
P A+ H R G ++F GP + P S + + R C + L
Sbjct: 427 PPATSHRRVTDVRGLEEFLSAMQSARGPTPSSPLPSVPVSVPASDPRSCSSGPAGPYLLS 486
Query: 121 -QGQREPERLTSHGSSLVPGPPDPPWSPQV 149
+G + H S G P PP +PQ+
Sbjct: 487 KKGALQSRAAQRHRGSAKDGGPQPPDAPQL 516
>gi|237820622 pleckstrin homology domain containing, family N member
1 isoform a [Homo sapiens]
Length = 611
Score = 31.2 bits (69), Expect = 1.3
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 63 PRASRHTRTGICMGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQKPEMQL-- 120
P A+ H R G ++F GP + P S + + R C + L
Sbjct: 462 PPATSHRRVTDVRGLEEFLSAMQSARGPTPSSPLPSVPVSVPASDPRSCSSGPAGPYLLS 521
Query: 121 -QGQREPERLTSHGSSLVPGPPDPPWSPQV 149
+G + H S G P PP +PQ+
Sbjct: 522 KKGALQSRAAQRHRGSAKDGGPQPPDAPQL 551
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 31.2 bits (69), Expect = 1.3
Identities = 42/157 (26%), Positives = 62/157 (39%), Gaps = 11/157 (7%)
Query: 85 LERPGPGGCREVSITPASAESQERRLCHAQKPEMQLQGQ--REPERLTSHGSSLVPGPPD 142
L+RP P R S+ + L KPE + Q Q R P S G+ P PP+
Sbjct: 494 LKRPPPPPRRTHSLHQRGLAVPDGPLGLPPKPERKQQPQLPRPPTTGGSEGAGAAPCPPN 553
Query: 143 P--PWSPQVDLHLICYNPDIRNRAREEGVLKGHSLSCWRGRGTRPPFLLRGSPAR--RLR 198
P W P + P R+ E + S G T PP L G PA + +
Sbjct: 554 PANSWVPGLSPGGSRRPP----RSPERTLSPSSGYSSQSGTPTLPPKGLAGPPASPGKAQ 609
Query: 199 LPAPHDLCGLGAL-SSVAAGLQAGACAENDCGRGSRA 234
P P + L + +SV++ L + + +D R+
Sbjct: 610 PPKPERVTSLRSPGASVSSSLTSLCSSSSDPAPSDRS 646
>gi|4507447 transcription factor AP-4 (activating enhancer binding
protein 4) [Homo sapiens]
Length = 338
Score = 30.4 bits (67), Expect = 2.2
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 104 ESQERRLCHAQKPEMQLQGQRE----PERLTSHGSSLVPGPPDPP 144
+ ++ RL H +K E + Q R P T H + +VP PP PP
Sbjct: 200 QQEQVRLLHQEKLEREQQQLRTQLLPPPAPTHHPTVIVPAPPPPP 244
>gi|167000400 gamma-aminobutyric acid (GABA) B receptor 1 isoform c
precursor [Homo sapiens]
Length = 899
Score = 30.4 bits (67), Expect = 2.2
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 94 REVSITPASAESQERRLCHAQKPEMQLQGQREPERLTSHGSSLVPGPPDPP 144
RE+ A E + L H + QL+ +R P L GPP+PP
Sbjct: 834 RELEKIIAEKEERVSELRHQLQSRQQLRSRRHPPTPPEPSGGLPRGPPEPP 884
>gi|11497612 gamma-aminobutyric acid (GABA) B receptor 1 isoform b
precursor [Homo sapiens]
Length = 844
Score = 30.4 bits (67), Expect = 2.2
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 94 REVSITPASAESQERRLCHAQKPEMQLQGQREPERLTSHGSSLVPGPPDPP 144
RE+ A E + L H + QL+ +R P L GPP+PP
Sbjct: 779 RELEKIIAEKEERVSELRHQLQSRQQLRSRRHPPTPPEPSGGLPRGPPEPP 829
>gi|10835015 gamma-aminobutyric acid (GABA) B receptor 1 isoform a
precursor [Homo sapiens]
Length = 961
Score = 30.4 bits (67), Expect = 2.2
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 94 REVSITPASAESQERRLCHAQKPEMQLQGQREPERLTSHGSSLVPGPPDPP 144
RE+ A E + L H + QL+ +R P L GPP+PP
Sbjct: 896 RELEKIIAEKEERVSELRHQLQSRQQLRSRRHPPTPPEPSGGLPRGPPEPP 946
>gi|169204928 PREDICTED: hypothetical protein [Homo sapiens]
Length = 215
Score = 30.4 bits (67), Expect = 2.2
Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 138 PGPPDPPWSPQVDLHLICYNPDIRNRAREEGVLKGHSLSCWRGRGTRPPFLLRGSP---- 193
P PP PP P H N D+R G + WRGRG R LRG
Sbjct: 137 PPPPPPPLPPAPTRH---GNTDVRASQPIAGCGRREGAR-WRGRGQRQAKALRGRKKGRG 192
Query: 194 ARRLRLPAP 202
RR + P P
Sbjct: 193 VRRRKSPPP 201
>gi|113423861 PREDICTED: hypothetical protein [Homo sapiens]
Length = 215
Score = 30.4 bits (67), Expect = 2.2
Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 138 PGPPDPPWSPQVDLHLICYNPDIRNRAREEGVLKGHSLSCWRGRGTRPPFLLRGSP---- 193
P PP PP P H N D+R G + WRGRG R LRG
Sbjct: 137 PPPPPPPLPPAPTRH---GNTDVRASQPIAGCGRREGAR-WRGRGQRQAKALRGRKKGRG 192
Query: 194 ARRLRLPAP 202
RR + P P
Sbjct: 193 VRRRKSPPP 201
>gi|113423437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 215
Score = 30.4 bits (67), Expect = 2.2
Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 138 PGPPDPPWSPQVDLHLICYNPDIRNRAREEGVLKGHSLSCWRGRGTRPPFLLRGSP---- 193
P PP PP P H N D+R G + WRGRG R LRG
Sbjct: 137 PPPPPPPLPPAPTRH---GNTDVRASQPIAGCGRREGAR-WRGRGQRQAKALRGRKKGRG 192
Query: 194 ARRLRLPAP 202
RR + P P
Sbjct: 193 VRRRKSPPP 201
>gi|194097354 G1 to S phase transition 1 isoform 2 [Homo sapiens]
Length = 636
Score = 30.4 bits (67), Expect = 2.2
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 85 LERPGPGGCREVSITPASAESQERRLCHAQKPEMQLQGQREPERLTSHGSSLVP----GP 140
+E PGPG C A+AE+Q L A QL +P H + VP GP
Sbjct: 36 MEAPGPGPCGGGGSLAAAAEAQRENLSAAF--SRQLNVNAKPFVPNVHAAEFVPSFLRGP 93
Query: 141 PDPP 144
PP
Sbjct: 94 AAPP 97
>gi|194018520 G1 to S phase transition 1 isoform 1 [Homo sapiens]
Length = 637
Score = 30.4 bits (67), Expect = 2.2
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 85 LERPGPGGCREVSITPASAESQERRLCHAQKPEMQLQGQREPERLTSHGSSLVP----GP 140
+E PGPG C A+AE+Q L A QL +P H + VP GP
Sbjct: 36 MEAPGPGPCGGGGSLAAAAEAQRENLSAAF--SRQLNVNAKPFVPNVHAAEFVPSFLRGP 93
Query: 141 PDPP 144
PP
Sbjct: 94 AAPP 97
>gi|4504975 low density lipoprotein receptor precursor [Homo
sapiens]
Length = 860
Score = 30.0 bits (66), Expect = 2.9
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 227 DCGRGSRAQHCTARRPTADMWGDWVDRKTRRAFVA-AGRDSLGSLNQARVGGDPVPVHRP 285
DC GS Q C + + D + + R FV + RD L ++A PV P
Sbjct: 94 DCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASC---PVLTCGP 150
Query: 286 ASAQPGESTCAP 297
AS Q STC P
Sbjct: 151 ASFQCNSSTCIP 162
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 30.0 bits (66), Expect = 2.9
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 98 ITPASAESQERRLCHAQKPEMQLQGQREPERLTSHG---------SSLVPGPPDPPWSPQ 148
IT AS S + R+ HA L E + T+HG S L P PP PP P+
Sbjct: 1559 ITLASDASSQTRMVHASASTSPLCSPTETQP-TTHGYSQTTPPSVSQLPPEPPGPPGFPR 1617
Query: 149 V 149
V
Sbjct: 1618 V 1618
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 29.6 bits (65), Expect = 3.8
Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 13/109 (11%)
Query: 100 PASAESQERRLCHAQKPEMQLQGQREPERLTSHGSSLVPGPPDPPWSPQVDLHLICYNPD 159
P + ER + AQ+ + ++GQ P+ +PGPP+P P
Sbjct: 537 PLPTVAPERWITPAQREHVGMKGQAGPKGEKGDAGEELPGPPEPSGP---------VGPT 587
Query: 160 IRNRAREEGVLKGHSLSCWRGRGTRPPFLLRGSPARRLRLPAPHDLCGL 208
A G+ G + G LLRG P P P L G+
Sbjct: 588 AGAEAEGSGLGWGSDVGSGSGDLVGSEQLLRGPPGP----PGPPGLPGI 632
>gi|187171277 DNA-directed DNA polymerase gamma [Homo sapiens]
Length = 1239
Score = 29.6 bits (65), Expect = 3.8
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 88 PGPGGCREVSITPAS--AESQERRLCHAQKPEMQLQGQREPERLTSHGSSLVPGPPD 142
P PG S+ PAS ++ Q RR Q+ + Q Q ++P+ L+S G L P D
Sbjct: 20 PAPGRWVSSSV-PASDPSDGQRRRQQQQQQQQQQQQQPQQPQVLSSEGGQLRHNPLD 75
>gi|4505937 DNA-directed DNA polymerase gamma [Homo sapiens]
Length = 1239
Score = 29.6 bits (65), Expect = 3.8
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 88 PGPGGCREVSITPAS--AESQERRLCHAQKPEMQLQGQREPERLTSHGSSLVPGPPD 142
P PG S+ PAS ++ Q RR Q+ + Q Q ++P+ L+S G L P D
Sbjct: 20 PAPGRWVSSSV-PASDPSDGQRRRQQQQQQQQQQQQQPQQPQVLSSEGGQLRHNPLD 75
>gi|239755589 PREDICTED: hypothetical protein [Homo sapiens]
Length = 356
Score = 29.6 bits (65), Expect = 3.8
Identities = 34/113 (30%), Positives = 40/113 (35%), Gaps = 32/113 (28%)
Query: 133 GSSLVPGPPDPPWSPQVDLHLICYNPDIRNRAREEGVLKGHSLSCWRGRGTRPPFLLRG- 191
G S P PP PP P+ +P R R GHS + GRGT+ P R
Sbjct: 183 GGSSPPAPPLPP-PPKPG------SPTQRAREASSWKPPGHSHTAPPGRGTQRPLTQRHS 235
Query: 192 ---------------------SPARRLRLPAPHDLCGLGALSSVAAGLQAGAC 223
SP +RL P P D AL+S Q GAC
Sbjct: 236 SESSSELSSSAWPGTIWTSTLSPGQRLPTPPPPD---PAALTSWGLPQQQGAC 285
>gi|239752992 PREDICTED: hypothetical protein XP_002345322 [Homo
sapiens]
Length = 277
Score = 29.6 bits (65), Expect = 3.8
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 116 PEMQLQGQREPERLTSHGSSLVPGPPD---PPWSPQVDLHLICYNPDIRNRARE--EGVL 170
P Q +G R P R + HG + +PG P+ PP P D I Y R+ E EG
Sbjct: 138 PVCQTRG-RSPSRTSFHGETQIPGAPEGRKPPSCPGKDQRDINYKSSGTPRSLEPDEGAA 196
Query: 171 K-GHSLSCWRGRGTRP 185
S C +G RP
Sbjct: 197 SWASSPVCSPVQGKRP 212
>gi|239747550 PREDICTED: hypothetical protein XP_002347647 [Homo
sapiens]
Length = 277
Score = 29.6 bits (65), Expect = 3.8
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 116 PEMQLQGQREPERLTSHGSSLVPGPPD---PPWSPQVDLHLICYNPDIRNRARE--EGVL 170
P Q +G R P R + HG + +PG P+ PP P D I Y R+ E EG
Sbjct: 138 PVCQTRG-RSPSRTSFHGETQIPGAPEGRKPPSCPGKDQRDINYKSSGTPRSLEPDEGAA 196
Query: 171 K-GHSLSCWRGRGTRP 185
S C +G RP
Sbjct: 197 SWASSPVCSPVQGKRP 212
>gi|239741424 PREDICTED: hypothetical protein XP_002342197 [Homo
sapiens]
Length = 277
Score = 29.6 bits (65), Expect = 3.8
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 116 PEMQLQGQREPERLTSHGSSLVPGPPD---PPWSPQVDLHLICYNPDIRNRARE--EGVL 170
P Q +G R P R + HG + +PG P+ PP P D I Y R+ E EG
Sbjct: 138 PVCQTRG-RSPSRTSFHGETQIPGAPEGRKPPSCPGKDQRDINYKSSGTPRSLEPDEGAA 196
Query: 171 K-GHSLSCWRGRGTRP 185
S C +G RP
Sbjct: 197 SWASSPVCSPVQGKRP 212
>gi|169162878 PREDICTED: hypothetical protein [Homo sapiens]
Length = 169
Score = 29.6 bits (65), Expect = 3.8
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 74 CMGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQKPEMQLQGQREPERLTSHG 133
C G + +R G G RE QERRL H+ G E E G
Sbjct: 46 CTGRHPSLSVRAQRAGTGASREEGTFWTECVGQERRLIHS--------GSSENESQEDEG 97
Query: 134 SSLVP 138
+ L+P
Sbjct: 98 ADLIP 102
>gi|5902104 SRY (sex determining region Y)-box 10 [Homo sapiens]
Length = 466
Score = 29.6 bits (65), Expect = 3.8
Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 90 PGGCREVSITPA-SAESQERRLCHAQKPEMQLQGQREPERLTSHGSSLVPGPPDPPWSPQ 148
PGG E T A A + L H E PE H S GPP PP +P+
Sbjct: 191 PGGEAEQGGTAAIQAHYKSAHLDHRHPGEGSPMSDGNPE----HPSGQSHGPPTPPTTPK 246
Query: 149 VDLHLICYNPDIRNRAREEG 168
+L +P R+ EG
Sbjct: 247 TELQSGKADPKRDGRSMGEG 266
>gi|22749021 beta-1,3-N-acetylgalactosaminyltransferase 2 [Homo
sapiens]
Length = 500
Score = 29.6 bits (65), Expect = 3.8
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 35 HILAFVSCLSPLECKLQRNCIRSTWLR----RPRASRHTRTGICMGAQKFQDLTLERPGP 90
H V LS RN IRSTW+R P S+ +GA + +R P
Sbjct: 50 HYDVVVGVLSARNNHELRNVIRSTWMRHLLQHPTLSQRVLVKFIIGAHGCEVPVEDREDP 109
Query: 91 GGCREVSIT 99
C+ ++IT
Sbjct: 110 YSCKLLNIT 118
>gi|194239681 tubulin tyrosine ligase-like family, member 10 isoform
1 [Homo sapiens]
Length = 673
Score = 29.6 bits (65), Expect = 3.8
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 61 RRPRASRHTRTGIC--MGAQKFQDLTLERPGP----GGCR--EVSITPASAESQERRLCH 112
+RPR + R + + A + +PGP G C P + +E C
Sbjct: 26 KRPRIQQRPRARVSGTIPASRLHPAPASQPGPCPAPGHCPVGPAHERPMGSSQEEGLRCQ 85
Query: 113 AQKPEMQLQGQREPERLTSHGSSLVPGPP 141
+P+ G P+ + +S PGPP
Sbjct: 86 PSQPDHDADGHCGPDLEGAERASATPGPP 114
>gi|37537554 hypothetical protein FLJ37538 [Homo sapiens]
Length = 841
Score = 29.6 bits (65), Expect = 3.8
Identities = 38/147 (25%), Positives = 52/147 (35%), Gaps = 31/147 (21%)
Query: 69 TRTGICMGAQKFQDLTLERP---GPGGCREVSITPASAESQERRLCHAQKPEMQLQGQRE 125
T+T C F +L RP + S TP S+ LCH+++P +
Sbjct: 316 TKTTPCEIPPPFPNLLQHRPPLLAFPQAKSASRTPGDGVSRLPVLCHSKEPAGSTPAPQV 375
Query: 126 PERLTSHGSSLVPGPPDPPWSPQVDLHLICYNPDIRNRAR--------------EEGVLK 171
P R P PP PP P +L L+ P R R+ E +
Sbjct: 376 PAR-----ERETPPPPPPP--PAANLLLL--GPSGRARSHSTPLPPQGSGQPRGERELPN 426
Query: 172 GHSLSCWRGRGT-----RPPFLLRGSP 193
HS+ C + G P LL G P
Sbjct: 427 SHSMICPKAAGAPAAPPAPAALLPGPP 453
>gi|239750710 PREDICTED: hypothetical protein [Homo sapiens]
Length = 317
Score = 29.3 bits (64), Expect = 4.9
Identities = 54/198 (27%), Positives = 75/198 (37%), Gaps = 20/198 (10%)
Query: 107 ERRLCHAQKPEMQLQGQREPERLTSHGSSLVPGPPDPPWSPQVDLHLICYNP-DIRNRAR 165
+ + C A+ + L+G R+P + + GP PP S D C P + AR
Sbjct: 5 KEKTCQAEGAD--LEGPRDPGGVLRFAAVACSGPTCPPTSENADRSCGCPPPAPPISPAR 62
Query: 166 EEGVLKGHSLSCWRGRGTRPPFLLRG-----SPARRLRLPAPHDLCGLGALSSVAA---G 217
L+G + G P F L + A L+ + L L LSS G
Sbjct: 63 PTSFLQGPGSCLLQRSGQAPYFFLPDFTTPQASAWPLQAASEEPLYYLQTLSSSQNPFWG 122
Query: 218 LQAG--ACAENDCGRGSRAQHCTARRPTADMWGDWVDRKTRRAFVAAGRDSLGSLNQARV 275
LQAG + E + SR++ R A + G R R+ GR GS + R
Sbjct: 123 LQAGKHSAPEVLWPKASRSKRTRRRASVAVISG----RPGSRSRERCGR---GSGSWRRT 175
Query: 276 GGDPVPVHRPASAQPGES 293
G A AQ GES
Sbjct: 176 GLLVADAKGGAGAQRGES 193
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,100,144
Number of Sequences: 37866
Number of extensions: 888236
Number of successful extensions: 3304
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 3281
Number of HSP's gapped (non-prelim): 63
length of query: 322
length of database: 18,247,518
effective HSP length: 102
effective length of query: 220
effective length of database: 14,385,186
effective search space: 3164740920
effective search space used: 3164740920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.