Guide to the Human Genome
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Name: LOC100288131 Sequence: fasta or formatted (317aa) NCBI GI: 239750710
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {317aa} PREDICTED: hypothetical protein XP_002343331
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.6         40           4
 C cysteine            2.8          9           1
 D aspartate           2.8          9           1
 E glutamate           4.7         15           2
 F phenylalanine       2.2          7           2
 G glycine            10.1         32           2
 H histidine           3.5         11           1
 I isoleucine          1.3          4           1
 K lysine              3.2         10           1
 L leucine             7.3         23           2
 M methionine          0.3          1           1
 N asparagine          1.6          5           1
 P proline            11.0         35           4
 Q glutamine           5.4         17           1
 R arginine            7.6         24           3
 S serine              9.5         30           3
 T threonine           6.0         19           2
 V valine              4.1         13           1
 W tryptophan          2.2          7           1
 Y tyrosine            1.9          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288131          1.000   PREDICTED: hypothetical protein XP_002343331 
LOC100292877          0.025   PREDICTED: hypothetical protein 
LOC100291270          0.025   PREDICTED: hypothetical protein XP_002346869 
LOC100287955          0.025   PREDICTED: hypothetical protein XP_002342711 
LOC100291674          0.017   PREDICTED: hypothetical protein XP_002345936 
LOC100290526          0.017   PREDICTED: hypothetical protein XP_002346804 
LOC100288875          0.017   PREDICTED: hypothetical protein XP_002342673 
DVL2                  0.016   dishevelled 2 
ZNF831                0.014   zinc finger protein 831 
ARMCX2                0.014   ALEX2 protein 
PDCD7                 0.014   programmed cell death 7 
ARMCX2                0.014   ALEX2 protein 
LOC645321             0.014   PREDICTED: hypothetical protein 
LOC645321             0.014   PREDICTED: hypothetical protein 
LOC100292591          0.012   PREDICTED: hypothetical protein 
C6orf132              0.012   PREDICTED: chromosome 6 open reading frame 132 [Hom...
LOC100287994          0.012   PREDICTED: hypothetical protein 
C6orf132              0.012   PREDICTED: chromosome 6 open reading frame 132 [Hom...
LOC100287994          0.012   PREDICTED: hypothetical protein XP_002342988 
C6orf132              0.012   PREDICTED: hypothetical protein LOC647024 
MAGI2                 0.012   membrane associated guanylate kinase, WW and PDZ dom...
APC2                  0.012   adenomatosis polyposis coli 2 
CHCHD2                0.012   coiled-coil-helix-coiled-coil-helix domain containing...
MYO15A                0.012   myosin XV 
LOC100293935          0.012   PREDICTED: hypothetical protein 
LOC100287289          0.012   PREDICTED: hypothetical protein 
LOC100287289          0.012   PREDICTED: hypothetical protein XP_002343656 
BPTF                  0.012   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.012   bromodomain PHD finger transcription factor isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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