Guide to the Human Genome
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Name: PLEKHN1 Sequence: fasta or formatted (611aa) NCBI GI: 237820622
Description:

pleckstrin homology domain containing, family N member 1 isoform a

Referenced in:

Inositol Pathways

Other entries for this name:
alt prot [576aa] pleckstrin homology domain containing, family N member 1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         46           3
 C cysteine            2.1         13           1
 D aspartate           4.1         25           1
 E glutamate           5.7         35           2
 F phenylalanine       2.3         14           1
 G glycine             8.5         52           2
 H histidine           3.9         24           1
 I isoleucine          1.8         11           1
 K lysine              2.8         17           2
 L leucine            11.6         71           2
 M methionine          0.7          4           1
 N asparagine          1.5          9           1
 P proline            10.0         61           2
 Q glutamine           4.6         28           1
 R arginine            8.8         54           3
 S serine             12.1         74           3
 T threonine           4.3         26           1
 V valine              4.6         28           2
 W tryptophan          1.1          7           1
 Y tyrosine            2.0         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pleckstrin homology domain containing, family N mem... 
PLEKHN1               0.900   pleckstrin homology domain containing, family N mem...
ARHGEF7               0.035   PAK-interacting exchange factor beta isoform a [Hom...
ARHGEF7               0.035   PAK-interacting exchange factor beta isoform d [Hom...
ARHGEF7               0.035   PAK-interacting exchange factor beta isoform c [Hom...
ARHGEF7               0.035   PAK-interacting exchange factor beta isoform b [Homo...
ARHGEF7               0.035   PAK-interacting exchange factor beta isoform a 
LOC729569             0.020   PREDICTED: hypothetical protein 
CXorf67               0.018   hypothetical protein LOC340602 
ARHGEF6               0.018   Rac/Cdc42 guanine nucleotide exchange factor 6 [Homo...
MED1                  0.016   mediator complex subunit 1 
MLL4                  0.015   myeloid/lymphoid or mixed-lineage leukemia 4 
FAM83H                0.015   FAM83H 
NACA                  0.015   nascent polypeptide-associated complex alpha subuni...
WNK2                  0.014   WNK lysine deficient protein kinase 2 
SRRM2                 0.014   splicing coactivator subunit SRm300 
SMARCA2               0.013   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.013   SWI/SNF-related matrix-associated actin-dependent re...
FNDC1                 0.013   fibronectin type III domain containing 1 
WIPF1                 0.012   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.012   WAS/WASL interacting protein family, member 1 
NFATC4                0.012   nuclear factor of activated T-cells, cytoplasmic, c...
NFATC4                0.012   nuclear factor of activated T-cells, cytoplasmic, ca...
MAST3                 0.012   microtubule associated serine/threonine kinase 3 [H...
KIAA1539              0.012   hypothetical protein LOC80256 
MUC12                 0.011   PREDICTED: mucin 12 
MUC12                 0.011   PREDICTED: mucin 12, cell surface associated 
KIAA1715              0.011   Lunapark 
KIAA1522              0.011   hypothetical protein LOC57648 
ABL2                  0.011   arg tyrosine kinase isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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