Search of human proteins with 194239666

Search of human proteins with 194239666

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|194239666 interferon stimulated exonuclease gene 20kDa-like
1 [Homo sapiens]
         (325 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|194239666 interferon stimulated exonuclease gene 20kDa-like 1...   667   0.0  
gi|13569960 interferon stimulated exonuclease gene 20kDa-like 2 ...   228   4e-60
gi|6857800 interferon stimulated exonuclease [Homo sapiens]           158   5e-39
gi|76781492 XPMC2 prevents mitotic catastrophe 2 homolog [Homo s...   152   3e-37
gi|126273519 exonuclease GOR [Homo sapiens]                            81   1e-15
gi|239743602 PREDICTED: hypothetical protein XP_002342903 [Homo ...    81   1e-15
gi|239743600 PREDICTED: hypothetical protein XP_002342902 [Homo ...    81   1e-15
gi|239743598 PREDICTED: hypothetical protein XP_002342901 [Homo ...    81   1e-15
gi|239743596 PREDICTED: hypothetical protein XP_002342900 [Homo ...    81   1e-15
gi|239743594 PREDICTED: hypothetical protein XP_002342913, parti...    81   1e-15
gi|222136615 exonuclease NEF-sp isoform 2 [Homo sapiens]               77   2e-14
gi|222136613 exonuclease NEF-sp isoform 1 [Homo sapiens]               77   2e-14
gi|145199237 transcription elongation factor B polypeptide 3 bin...    75   1e-13
gi|188536114 PAN2 polyA specific ribonuclease subunit homolog is...    57   2e-08
gi|188536112 PAN2 polyA specific ribonuclease subunit homolog is...    57   2e-08
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]          38   0.014
gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo sa...    37   0.024
gi|130502140 NEZHA isoform 2 [Homo sapiens]                            34   0.20 
gi|122937255 NEZHA isoform 1 [Homo sapiens]                            34   0.20 
gi|150417984 ATP-binding cassette, sub-family A, member 7 [Homo ...    33   0.26 
gi|45643129 guanine nucleotide binding protein-like 3 isoform 2 ...    33   0.35 
gi|45643127 guanine nucleotide binding protein-like 3 isoform 2 ...    33   0.35 
gi|45593130 guanine nucleotide binding protein-like 3 isoform 1 ...    33   0.35 
gi|112421108 capicua homolog [Homo sapiens]                            33   0.35 
gi|49472835 bridging integrator 2 [Homo sapiens]                       33   0.35 
gi|27436927 synoviolin 1 isoform b [Homo sapiens]                      33   0.45 
gi|31542493 D site of albumin promoter (albumin D-box) binding p...    33   0.45 
gi|169173306 PREDICTED: hypothetical protein [Homo sapiens]            33   0.45 
gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens]     33   0.45 
gi|8924258 gamma-aminobutyric acid (GABA) receptor, theta precur...    33   0.45 

>gi|194239666 interferon stimulated exonuclease gene 20kDa-like 1
           [Homo sapiens]
          Length = 325

 Score =  667 bits (1721), Expect = 0.0
 Identities = 325/325 (100%), Positives = 325/325 (100%)

Query: 1   MVPREAPESAQCLCPSLTIPNAKDVLRKRHKRRSRQHQRFMARKALLQEQGLLSMPPEPG 60
           MVPREAPESAQCLCPSLTIPNAKDVLRKRHKRRSRQHQRFMARKALLQEQGLLSMPPEPG
Sbjct: 1   MVPREAPESAQCLCPSLTIPNAKDVLRKRHKRRSRQHQRFMARKALLQEQGLLSMPPEPG 60

Query: 61  SSPLPTPFGAATATEAASSGKQCLRAGSGSAPCSRRPAPGKASGPLPSKCVAIDCEMVGT 120
           SSPLPTPFGAATATEAASSGKQCLRAGSGSAPCSRRPAPGKASGPLPSKCVAIDCEMVGT
Sbjct: 61  SSPLPTPFGAATATEAASSGKQCLRAGSGSAPCSRRPAPGKASGPLPSKCVAIDCEMVGT 120

Query: 121 GPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADYRTRWSGITRQHMRKAVPFQVAQKE 180
           GPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADYRTRWSGITRQHMRKAVPFQVAQKE
Sbjct: 121 GPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADYRTRWSGITRQHMRKAVPFQVAQKE 180

Query: 181 ILKLLKGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNFLSEPGLHTRARVSLKDLALQ 240
           ILKLLKGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNFLSEPGLHTRARVSLKDLALQ
Sbjct: 181 ILKLLKGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNFLSEPGLHTRARVSLKDLALQ 240

Query: 241 LLHKKIQVGQHGHSSVEDATTAMELYRLVEVQWEQQEARSLWTCPEDREPDSSTDMEQYM 300
           LLHKKIQVGQHGHSSVEDATTAMELYRLVEVQWEQQEARSLWTCPEDREPDSSTDMEQYM
Sbjct: 241 LLHKKIQVGQHGHSSVEDATTAMELYRLVEVQWEQQEARSLWTCPEDREPDSSTDMEQYM 300

Query: 301 EDQYWPDDLAHGSRGGAREAQDRRN 325
           EDQYWPDDLAHGSRGGAREAQDRRN
Sbjct: 301 EDQYWPDDLAHGSRGGAREAQDRRN 325


>gi|13569960 interferon stimulated exonuclease gene 20kDa-like 2
           [Homo sapiens]
          Length = 353

 Score =  228 bits (582), Expect = 4e-60
 Identities = 110/179 (61%), Positives = 139/179 (77%)

Query: 102 ASGPLPSKCVAIDCEMVGTGPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADYRTRWS 161
           AS  LP K VAIDCEMVGTGP+G VS LARCSIV+Y+G+VLYD+YI P   I DYRTRWS
Sbjct: 171 ASQKLPRKMVAIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWS 230

Query: 162 GITRQHMRKAVPFQVAQKEILKLLKGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNFL 221
           GI +QHM  A PF++A+ +ILK+L GK+VVGHA+HNDF+AL+Y HP+S TRDT+++P   
Sbjct: 231 GIRKQHMVNATPFKIARGQILKILTGKIVVGHAIHNDFKALQYFHPKSLTRDTSHIPPLN 290

Query: 222 SEPGLHTRARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMELYRLVEVQWEQQEARS 280
            +      A +SLK L  +LL++ IQVG+ GHSSVEDA   MELY+LVEV+WE+  AR+
Sbjct: 291 RKADCPENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMELYKLVEVEWEEHLARN 349


>gi|6857800 interferon stimulated exonuclease [Homo sapiens]
          Length = 181

 Score =  158 bits (400), Expect = 5e-39
 Identities = 92/158 (58%), Positives = 107/158 (67%), Gaps = 1/158 (0%)

Query: 111 VAIDCEMVGTGPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADYRTRWSGITRQHMRK 170
           VA+DCEMVG GP  R S LARCS+V+ HG VLYDK+IRPE  I DYRTR SG+T QHM  
Sbjct: 8   VAMDCEMVGLGPH-RESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVG 66

Query: 171 AVPFQVAQKEILKLLKGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNFLSEPGLHTRA 230
           A PF VA+ EIL+LLKGK+VVGH L +DFQALK         DT+       E  L    
Sbjct: 67  ATPFAVARLEILQLLKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCR 126

Query: 231 RVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMELYRL 268
           RVSL+ L+ +LLHK IQ    GHSSVEDA   MELY++
Sbjct: 127 RVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQI 164


>gi|76781492 XPMC2 prevents mitotic catastrophe 2 homolog [Homo
           sapiens]
          Length = 422

 Score =  152 bits (385), Expect = 3e-37
 Identities = 90/230 (39%), Positives = 134/230 (58%), Gaps = 10/230 (4%)

Query: 65  PTPFGAATATEAASSGKQCLRAGSGSAPCSRRPAPGKASGPLPSKCVAIDCEMVGTGPRG 124
           P    AA   EAA   ++ L    GS   S      +A G L ++ +A+DCEMVG GP+G
Sbjct: 201 PADIEAAIGPEAAKIARKQLGQSEGSVSLSL--VKEQAFGGL-TRALALDCEMVGVGPKG 257

Query: 125 RVSELARCSIVSYHGNVLYDKYIRPEMPIADYRTRWSGITRQHMRKAVPFQVAQKEILKL 184
             S  AR SIV+ +G  +YDKY++P  P+ DYRT  SGI  +++++    +V QKE+ ++
Sbjct: 258 EESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLKQGEELEVVQKEVAEM 317

Query: 185 LKGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNFLSEPGLHTRARVSLKDLALQLLHK 244
           LKG+++VGHALHND + L   HP+ + RDT     F S+       R SL+ L+ ++L  
Sbjct: 318 LKGRILVGHALHNDLKVLFLDHPKKKIRDTQKYKPFKSQV---KSGRPSLRLLSEKIL-- 372

Query: 245 KIQVGQHGHSSVEDATTAMELYRLVEVQWEQ--QEARSLWTCPEDREPDS 292
            +QV Q  H S++DA  AM LY +V+ +WE   ++ R L T P+    D+
Sbjct: 373 GLQVQQAEHCSIQDAQAAMRLYVMVKKEWESMARDRRPLLTAPDHCSDDA 422


>gi|126273519 exonuclease GOR [Homo sapiens]
          Length = 675

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 56/169 (33%), Positives = 91/169 (53%), Gaps = 18/169 (10%)

Query: 112 AIDCEMVGTGPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADYRTRWSGITRQHMRK- 170
           A+DCEM  T       EL R ++V     V+YD +++P+  I DY TR+SG+T   + K 
Sbjct: 503 ALDCEMCYTT---HGLELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 559

Query: 171 AVPFQVAQKEILKLLKGK-VVVGHALHNDFQALKYVHPRSQTRDTTYV-PNFLSEPGLHT 228
           ++     Q  +L     + +++GH+L +D  ALK +H  S   DT  + P++L  P    
Sbjct: 560 SITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIH--STVVDTAVLFPHYLGFP---- 613

Query: 229 RARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMELYRLVEVQWEQQE 277
             + SL++LA   L + IQ  Q GH+S EDA+  ++L     V W+ ++
Sbjct: 614 -YKRSLRNLAADYLAQIIQDSQDGHNSSEDASACLQL-----VMWKVRQ 656


>gi|239743602 PREDICTED: hypothetical protein XP_002342903 [Homo
           sapiens]
          Length = 675

 Score = 80.9 bits (198), Expect = 1e-15
 Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 18/169 (10%)

Query: 112 AIDCEMVGTGPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADYRTRWSGITRQHMRK- 170
           A+DCEM  T       EL R ++V     V+YD +++P+  I DY TR+SG+T   + K 
Sbjct: 503 ALDCEMCYTT---HGLELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 559

Query: 171 AVPFQVAQKEILKLLKGK-VVVGHALHNDFQALKYVHPRSQTRDTTYV-PNFLSEPGLHT 228
           ++     Q  +L     + +++GH+L +D  ALK +H  S   DT  + P++L  P    
Sbjct: 560 SITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIH--STVVDTAVLFPHYLGFP---- 613

Query: 229 RARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMELYRLVEVQWEQQE 277
             + SL++LA   L + IQ  Q GH+S EDA   ++L     V W+ ++
Sbjct: 614 -YKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQL-----VMWKVRQ 656


>gi|239743600 PREDICTED: hypothetical protein XP_002342902 [Homo
           sapiens]
          Length = 675

 Score = 80.9 bits (198), Expect = 1e-15
 Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 18/169 (10%)

Query: 112 AIDCEMVGTGPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADYRTRWSGITRQHMRK- 170
           A+DCEM  T       EL R ++V     V+YD +++P+  I DY TR+SG+T   + K 
Sbjct: 503 ALDCEMCYTT---HGLELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 559

Query: 171 AVPFQVAQKEILKLLKGK-VVVGHALHNDFQALKYVHPRSQTRDTTYV-PNFLSEPGLHT 228
           ++     Q  +L     + +++GH+L +D  ALK +H  S   DT  + P++L  P    
Sbjct: 560 SITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIH--STVVDTAVLFPHYLGFP---- 613

Query: 229 RARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMELYRLVEVQWEQQE 277
             + SL++LA   L + IQ  Q GH+S EDA   ++L     V W+ ++
Sbjct: 614 -YKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQL-----VMWKVRQ 656


>gi|239743598 PREDICTED: hypothetical protein XP_002342901 [Homo
           sapiens]
          Length = 675

 Score = 80.9 bits (198), Expect = 1e-15
 Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 18/169 (10%)

Query: 112 AIDCEMVGTGPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADYRTRWSGITRQHMRK- 170
           A+DCEM  T       EL R ++V     V+YD +++P+  I DY TR+SG+T   + K 
Sbjct: 503 ALDCEMCYTT---HGLELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 559

Query: 171 AVPFQVAQKEILKLLKGK-VVVGHALHNDFQALKYVHPRSQTRDTTYV-PNFLSEPGLHT 228
           ++     Q  +L     + +++GH+L +D  ALK +H  S   DT  + P++L  P    
Sbjct: 560 SITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIH--STVVDTAVLFPHYLGFP---- 613

Query: 229 RARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMELYRLVEVQWEQQE 277
             + SL++LA   L + IQ  Q GH+S EDA   ++L     V W+ ++
Sbjct: 614 -YKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQL-----VMWKVRQ 656


>gi|239743596 PREDICTED: hypothetical protein XP_002342900 [Homo
           sapiens]
          Length = 675

 Score = 80.9 bits (198), Expect = 1e-15
 Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 18/169 (10%)

Query: 112 AIDCEMVGTGPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADYRTRWSGITRQHMRK- 170
           A+DCEM  T       EL R ++V     V+YD +++P+  I DY TR+SG+T   + K 
Sbjct: 503 ALDCEMCYTT---HGLELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 559

Query: 171 AVPFQVAQKEILKLLKGK-VVVGHALHNDFQALKYVHPRSQTRDTTYV-PNFLSEPGLHT 228
           ++     Q  +L     + +++GH+L +D  ALK +H  S   DT  + P++L  P    
Sbjct: 560 SITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIH--STVVDTAVLFPHYLGFP---- 613

Query: 229 RARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMELYRLVEVQWEQQE 277
             + SL++LA   L + IQ  Q GH+S EDA   ++L     V W+ ++
Sbjct: 614 -YKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQL-----VMWKVRQ 656


>gi|239743594 PREDICTED: hypothetical protein XP_002342913, partial
           [Homo sapiens]
          Length = 552

 Score = 80.9 bits (198), Expect = 1e-15
 Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 18/169 (10%)

Query: 112 AIDCEMVGTGPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADYRTRWSGITRQHMRK- 170
           A+DCEM  T       EL R ++V     V+YD +++P+  I DY TR+SG+T   + K 
Sbjct: 380 ALDCEMCYTT---HGLELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 436

Query: 171 AVPFQVAQKEILKLLKGK-VVVGHALHNDFQALKYVHPRSQTRDTTYV-PNFLSEPGLHT 228
           ++     Q  +L     + +++GH+L +D  ALK +H  S   DT  + P++L  P    
Sbjct: 437 SITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIH--STVVDTAVLFPHYLGFP---- 490

Query: 229 RARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMELYRLVEVQWEQQE 277
             + SL++LA   L + IQ  Q GH+S EDA   ++L     V W+ ++
Sbjct: 491 -YKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQL-----VMWKVRQ 533


>gi|222136615 exonuclease NEF-sp isoform 2 [Homo sapiens]
          Length = 743

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 62/166 (37%), Positives = 88/166 (53%), Gaps = 20/166 (12%)

Query: 108 SKCVAIDCEMVGTGPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADYRTRWSGITRQH 167
           S    +DCEM  T  +GR  EL R S+V+  G  + D+ ++PE  I DY T +SGIT++ 
Sbjct: 226 SPLFGLDCEMCLTS-KGR--ELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKI 282

Query: 168 MRKAVPFQVAQKEILKLLKG-----KVVVGHALHNDFQALKYVHPRSQTRDTTYVPNFLS 222
           +    P     K++ + LK       V+VGH+L  D +ALK +HP     DT+ +  ++ 
Sbjct: 283 LN---PVTTKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHP--YVIDTSLL--YVR 335

Query: 223 EPGLHTRARVSLKDLALQLLHKKIQVGQH-GHSSVEDATTAMELYR 267
           E G     R  LK LA  +L K IQ     GH + EDA T +EL R
Sbjct: 336 EQG----RRFKLKFLAKVILGKDIQCPDRLGHDATEDARTILELAR 377


>gi|222136613 exonuclease NEF-sp isoform 1 [Homo sapiens]
          Length = 774

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 62/166 (37%), Positives = 88/166 (53%), Gaps = 20/166 (12%)

Query: 108 SKCVAIDCEMVGTGPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADYRTRWSGITRQH 167
           S    +DCEM  T  +GR  EL R S+V+  G  + D+ ++PE  I DY T +SGIT++ 
Sbjct: 226 SPLFGLDCEMCLTS-KGR--ELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKI 282

Query: 168 MRKAVPFQVAQKEILKLLKG-----KVVVGHALHNDFQALKYVHPRSQTRDTTYVPNFLS 222
           +    P     K++ + LK       V+VGH+L  D +ALK +HP     DT+ +  ++ 
Sbjct: 283 LN---PVTTKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHP--YVIDTSLL--YVR 335

Query: 223 EPGLHTRARVSLKDLALQLLHKKIQVGQH-GHSSVEDATTAMELYR 267
           E G     R  LK LA  +L K IQ     GH + EDA T +EL R
Sbjct: 336 EQG----RRFKLKFLAKVILGKDIQCPDRLGHDATEDARTILELAR 377


>gi|145199237 transcription elongation factor B polypeptide 3 binding
            protein 1 [Homo sapiens]
          Length = 1221

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 18/178 (10%)

Query: 103  SGPLPSKCVAIDCEMVGTGPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADYRTRWSG 162
            SG       A+DCEM  T       EL R ++V    +V+YD +++P+  I DY TR+SG
Sbjct: 1053 SGDTHPGIYALDCEMSYTTYG---LELTRVTVVDTDVHVVYDTFVKPDNEIVDYNTRFSG 1109

Query: 163  ITRQHMR-KAVPFQVAQKEILKLLKG-KVVVGHALHNDFQALKYVHPRSQTRDTTYV-PN 219
            +T   +   +V  +  Q  +L +     +++GH+L +D  ALK +H  S   DT+ + P+
Sbjct: 1110 VTEADLADTSVTLRDVQAVLLSMFSADTILIGHSLESDLLALKVIH--STVVDTSVLFPH 1167

Query: 220  FLSEPGLHTRARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMELYRLVEVQWEQQE 277
             L  P      + SL++L    L + IQ    GHSS EDA   M L     V W+ +E
Sbjct: 1168 RLGLP-----YKRSLRNLMADYLRQIIQDNVDGHSSSEDAGACMHL-----VIWKVRE 1215


>gi|188536114 PAN2 polyA specific ribonuclease subunit homolog isoform
            2 [Homo sapiens]
          Length = 1202

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 19/133 (14%)

Query: 144  DKYIRPEMPIADYRTRWSGI---------TRQHMRKAVPFQVAQKEILKLLKGKVVVGHA 194
            D YI  +  + DY T++SGI         + +H+       +  + ++ +  G   VGH 
Sbjct: 1026 DDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDI--GVKFVGHG 1083

Query: 195  LHNDFQALKYVHPRSQTRDTTYVPNFLSEPGLHTRARVSLKDLALQLLHKKIQVGQHGHS 254
            L  DF+ +  + P+ Q  DT Y+ +      +  +  +SL+ LA   L  KIQ     H 
Sbjct: 1084 LQKDFRVINLMVPKDQVLDTVYLFH------MPRKRMISLRFLAWYFLDLKIQ--GETHD 1135

Query: 255  SVEDATTAMELYR 267
            S+EDA TA++LYR
Sbjct: 1136 SIEDARTALQLYR 1148


>gi|188536112 PAN2 polyA specific ribonuclease subunit homolog isoform
            1 [Homo sapiens]
          Length = 1198

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 19/133 (14%)

Query: 144  DKYIRPEMPIADYRTRWSGI---------TRQHMRKAVPFQVAQKEILKLLKGKVVVGHA 194
            D YI  +  + DY T++SGI         + +H+       +  + ++ +  G   VGH 
Sbjct: 1022 DDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDI--GVKFVGHG 1079

Query: 195  LHNDFQALKYVHPRSQTRDTTYVPNFLSEPGLHTRARVSLKDLALQLLHKKIQVGQHGHS 254
            L  DF+ +  + P+ Q  DT Y+ +      +  +  +SL+ LA   L  KIQ     H 
Sbjct: 1080 LQKDFRVINLMVPKDQVLDTVYLFH------MPRKRMISLRFLAWYFLDLKIQ--GETHD 1131

Query: 255  SVEDATTAMELYR 267
            S+EDA TA++LYR
Sbjct: 1132 SIEDARTALQLYR 1144


>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
          Length = 887

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 54  SMPPEPGSSPLPTPFGAATATEAASSGKQCLRAGSGSAPCSRRPAPGKASGPLPSKCVA 112
           S PP+   SPL  PF AA A  AA++      A + +A  +  PAP  A+   P+   A
Sbjct: 479 SFPPQQAGSPLKRPFSAAAAIAAAAAA----AAAAAAAAAAAAPAPALAAAAAPALAAA 533


>gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo
           sapiens]
          Length = 601

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 57  PEPGSSPLPTPFGAATATEAASSGKQCLRAGSGSAPCS-RRPAPGKASGPLPSKCVAI 113
           P+P S+P  TP   AT  + ++SG     AGSGS   S   P+PG   G  PS   +I
Sbjct: 102 PDPASAPSTTPASPATPAQPSTSGSASSDAGSGSRRSSGGGPSPGAGEGS-PSATASI 158


>gi|130502140 NEZHA isoform 2 [Homo sapiens]
          Length = 1249

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 14/65 (21%)

Query: 48  QEQGLLSMPPEPGSSPLPTPF---GAATATEAASSGKQCLRAGSGSAPCSRRPAPGKASG 104
           Q+Q LL+ P  PGS+P P  +   G  T  +AAS            +P  R PA  ++ G
Sbjct: 723 QQQRLLAPPEAPGSAPPPAAWVIPGPTTGPKAAS-----------PSPARRVPATRRSPG 771

Query: 105 PLPSK 109
           P PS+
Sbjct: 772 PGPSQ 776


>gi|122937255 NEZHA isoform 1 [Homo sapiens]
          Length = 1276

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 14/65 (21%)

Query: 48  QEQGLLSMPPEPGSSPLPTPF---GAATATEAASSGKQCLRAGSGSAPCSRRPAPGKASG 104
           Q+Q LL+ P  PGS+P P  +   G  T  +AAS            +P  R PA  ++ G
Sbjct: 750 QQQRLLAPPEAPGSAPPPAAWVIPGPTTGPKAAS-----------PSPARRVPATRRSPG 798

Query: 105 PLPSK 109
           P PS+
Sbjct: 799 PGPSQ 803


>gi|150417984 ATP-binding cassette, sub-family A, member 7 [Homo
            sapiens]
          Length = 2146

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 7/82 (8%)

Query: 44   KALLQEQGLLSMPPEPGSSPLPTPFGAATATEAASSGKQCLRAGSGSAPCSRRPA----- 98
            +ALLQE GL   P +  S     P   A   +  +SG     + S +  CSR  A     
Sbjct: 1298 EALLQEAGLEEPPVQHSSHRFSAPEVPAEVAKVLASGNWTPESPSPACQCSRPGARRLLP 1357

Query: 99   --PGKASGPLPSKCVAIDCEMV 118
              P  A GP P + V    E+V
Sbjct: 1358 DCPAAAGGPPPPQAVTGSGEVV 1379


>gi|45643129 guanine nucleotide binding protein-like 3 isoform 2
           [Homo sapiens]
          Length = 537

 Score = 33.1 bits (74), Expect = 0.35
 Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 16/144 (11%)

Query: 26  LRKRHKRRSRQHQRFMARKALLQEQGLLSMPPEPGSS--PLPTPFGAATATEAASSGKQC 83
           LRK+     +Q Q+   +K L +++ L + P    S+  P+   FG       A SGKQ 
Sbjct: 54  LRKQRLEELKQQQKLDRQKELEKKRKLETNPDIKPSNVEPMEKEFGLCKTENKAKSGKQ- 112

Query: 84  LRAGSGSAPCSRRPAPGKASG----------PLPSKCVAIDCEMVGTGPRGRVSELARCS 133
               S    C       +AS           PL  +C  ++  +V +G +  V  L +  
Sbjct: 113 ---NSKKLYCQELKKVIEASDVVLEVLDARDPLGCRCPQVEEAIVQSGQKKLVLILNKSD 169

Query: 134 IVSYHGNVLYDKYIRPEMPIADYR 157
           +V       +  Y++ E+P   +R
Sbjct: 170 LVPKENLESWLNYLKKELPTVVFR 193


>gi|45643127 guanine nucleotide binding protein-like 3 isoform 2
           [Homo sapiens]
          Length = 537

 Score = 33.1 bits (74), Expect = 0.35
 Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 16/144 (11%)

Query: 26  LRKRHKRRSRQHQRFMARKALLQEQGLLSMPPEPGSS--PLPTPFGAATATEAASSGKQC 83
           LRK+     +Q Q+   +K L +++ L + P    S+  P+   FG       A SGKQ 
Sbjct: 54  LRKQRLEELKQQQKLDRQKELEKKRKLETNPDIKPSNVEPMEKEFGLCKTENKAKSGKQ- 112

Query: 84  LRAGSGSAPCSRRPAPGKASG----------PLPSKCVAIDCEMVGTGPRGRVSELARCS 133
               S    C       +AS           PL  +C  ++  +V +G +  V  L +  
Sbjct: 113 ---NSKKLYCQELKKVIEASDVVLEVLDARDPLGCRCPQVEEAIVQSGQKKLVLILNKSD 169

Query: 134 IVSYHGNVLYDKYIRPEMPIADYR 157
           +V       +  Y++ E+P   +R
Sbjct: 170 LVPKENLESWLNYLKKELPTVVFR 193


>gi|45593130 guanine nucleotide binding protein-like 3 isoform 1
           [Homo sapiens]
          Length = 549

 Score = 33.1 bits (74), Expect = 0.35
 Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 16/144 (11%)

Query: 26  LRKRHKRRSRQHQRFMARKALLQEQGLLSMPPEPGSS--PLPTPFGAATATEAASSGKQC 83
           LRK+     +Q Q+   +K L +++ L + P    S+  P+   FG       A SGKQ 
Sbjct: 66  LRKQRLEELKQQQKLDRQKELEKKRKLETNPDIKPSNVEPMEKEFGLCKTENKAKSGKQ- 124

Query: 84  LRAGSGSAPCSRRPAPGKASG----------PLPSKCVAIDCEMVGTGPRGRVSELARCS 133
               S    C       +AS           PL  +C  ++  +V +G +  V  L +  
Sbjct: 125 ---NSKKLYCQELKKVIEASDVVLEVLDARDPLGCRCPQVEEAIVQSGQKKLVLILNKSD 181

Query: 134 IVSYHGNVLYDKYIRPEMPIADYR 157
           +V       +  Y++ E+P   +R
Sbjct: 182 LVPKENLESWLNYLKKELPTVVFR 205


>gi|112421108 capicua homolog [Homo sapiens]
          Length = 1608

 Score = 33.1 bits (74), Expect = 0.35
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 50  QGLLSMPPEPGSSPLPTPFGAATATEAASSGKQCLRAGSGSAPCSRRPAPGKASGP-LPS 108
           +G  S P    SSP  +   AAT+    S   +   +G GS     RP P  A GP  PS
Sbjct: 526 KGYGSAPSSSASSPASSSASAATSFSLGSGTFKAQESGQGSTAGPLRPPPPGAGGPATPS 585

Query: 109 K 109
           K
Sbjct: 586 K 586


>gi|49472835 bridging integrator 2 [Homo sapiens]
          Length = 565

 Score = 33.1 bits (74), Expect = 0.35
 Identities = 21/76 (27%), Positives = 30/76 (39%)

Query: 33  RSRQHQRFMARKALLQEQGLLSMPPEPGSSPLPTPFGAATATEAASSGKQCLRAGSGSAP 92
           R++  +  +         G LS   +P SS         TA+E +   K+       SAP
Sbjct: 354 RAKSQEEVLPSSTTPSPGGALSPSGQPSSSATEVVLRTRTASEGSEQPKKRASIQRTSAP 413

Query: 93  CSRRPAPGKASGPLPS 108
            SR P P   + P PS
Sbjct: 414 PSRPPPPRATASPRPS 429


>gi|27436927 synoviolin 1 isoform b [Homo sapiens]
          Length = 617

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 56  PPEPGSSPLPTPFGAATATEAASSGKQCLRA----GSGSAPCSRRPAPG 100
           PP   ++ L  P GAAT T A +S           GSGSAP    PAPG
Sbjct: 406 PPSTSAAALSRPSGAATTTAAGTSATAASATASGPGSGSAP-EAGPAPG 453


>gi|31542493 D site of albumin promoter (albumin D-box) binding
           protein [Homo sapiens]
          Length = 325

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 26/62 (41%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 45  ALLQEQGLLSMPPEPGS-SPLPTPFGA-ATATEAASSGKQCLRAGSGSAPCSRRPAPGKA 102
           A L E GL   PP PG  SP P+P    A +    S G    R+  G AP   R A G A
Sbjct: 121 AFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPA--RAALGTA 178

Query: 103 SG 104
           SG
Sbjct: 179 SG 180


>gi|169173306 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 281

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 31/113 (27%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 3   PREAPESAQCLCPSLTIPNAKDVLRKRHKRRSRQHQRFMARKALLQEQGLLSMPPE---P 59
           P   P   + L   L +P     L  R   +  +H+R  A    L   G+  + P    P
Sbjct: 86  PWLGPRPRRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVTGVSRIRPAHGAP 145

Query: 60  GSSPLPTPFGAATATEAASSGKQCLRAGSGSAPCSRRPAPGKASGPLPSKCVA 112
           G    P P       E    G + LR   GS   +R P     SGP+P+  VA
Sbjct: 146 GLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRPNRHP----RSGPVPAHGVA 194


>gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens]
          Length = 1388

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 18/104 (17%)

Query: 51  GLLSMP----PEPGSSPLP---TPFGAATATEA---ASSGKQCL------RAGSGSAPCS 94
           G +SMP       G   +P    P    T+T      +SG  C        +G  S+P  
Sbjct: 843 GAMSMPLTRSTASGGMSMPLMRAPDSRVTSTSQMMPTASGDMCTLPVRAPASGGVSSPLV 902

Query: 95  RRPAPGKASGPL--PSKCVAIDCEMVGTGPRGRVSELARCSIVS 136
           R PA G  S PL  PS C  +  E++     G +S     ++VS
Sbjct: 903 RAPASGTMSTPLRRPSACETVSTELMRASASGHMSTAQTTAMVS 946


>gi|8924258 gamma-aminobutyric acid (GABA) receptor, theta precursor
           [Homo sapiens]
          Length = 632

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 24/101 (23%)

Query: 28  KRHKRRSRQHQRFMARKALLQ-------------EQGLLSMPPEPGSSPLPTP--FGAAT 72
           +R  RR R+ +R +AR    Q             E G+ S+P  P  +PL +P   G+ T
Sbjct: 359 RRQPRRHRRPRRVIARYRYQQVVVGNVQDGLINVEDGVSSLPITPAQAPLASPESLGSLT 418

Query: 73  ATE-----AASSGKQCLRAGSGSAPCSRRPAPGKASGPLPS 108
           +T      A S     L + SG AP     A G++   LPS
Sbjct: 419 STSEQAQLATSESLSPLTSLSGQAPL----ATGESLSDLPS 455


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.131    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,211,154
Number of Sequences: 37866
Number of extensions: 715118
Number of successful extensions: 4264
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 137
Number of HSP's that attempted gapping in prelim test: 4030
Number of HSP's gapped (non-prelim): 334
length of query: 325
length of database: 18,247,518
effective HSP length: 102
effective length of query: 223
effective length of database: 14,385,186
effective search space: 3207896478
effective search space used: 3207896478
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.