Guide to the Human Genome
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Name: GNL3 Sequence: fasta or formatted (537aa) NCBI GI: 45643127
Description:

guanine nucleotide binding protein-like 3 isoform 2

Referenced in:

Additional Guanine Nucleotide-binding Proteins
Small RNAs in RNA Processing

Other entries for this name:
alt prot [549aa] guanine nucleotide binding protein-like 3 isoform 1
alt mRNA [537aa] guanine nucleotide binding protein-like 3 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         34           2
 C cysteine            1.7          9           1
 D aspartate           4.5         24           2
 E glutamate          10.2         55           2
 F phenylalanine       3.0         16           2
 G glycine             5.4         29           2
 H histidine           1.5          8           2
 I isoleucine          5.0         27           2
 K lysine             11.5         62           2
 L leucine             8.8         47           2
 M methionine          1.7          9           1
 N asparagine          4.1         22           2
 P proline             5.2         28           3
 Q glutamine           4.7         25           3
 R arginine            5.2         28           2
 S serine              8.0         43           3
 T threonine           3.9         21           2
 V valine              6.5         35           2
 W tryptophan          0.9          5           1
 Y tyrosine            1.9         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   guanine nucleotide binding protein-like 3 isoform 2 ... 
GNL3                  1.000   guanine nucleotide binding protein-like 3 isoform 2 ...
GNL3                  1.000   guanine nucleotide binding protein-like 3 isoform 1 ...
GNL3L                 0.247   guanine nucleotide binding protein-like 3 (nucleolar)...
GNL2                  0.140   guanine nucleotide binding protein-like 2 (nucleolar)...
MTG1                  0.035   GTP_binding protein 
LSG1                  0.033   large subunit GTPase 1 
GNL1                  0.025   guanine nucleotide binding protein-like 1 
LOC100133599          0.018   PREDICTED: hypothetical protein 
NEFH                  0.018   neurofilament, heavy polypeptide 200kDa 
WDR87                 0.016   NYD-SP11 protein 
SMC1A                 0.016   structural maintenance of chromosomes 1A 
LOC100133599          0.016   PREDICTED: hypothetical protein 
TCHH                  0.016   trichohyalin 
OFD1                  0.015   oral-facial-digital syndrome 1 
MAP1B                 0.015   microtubule-associated protein 1B 
EIF5B                 0.015   eukaryotic translation initiation factor 5B 
LOC283767             0.014   golgi autoantigen, golgin subfamily a-like 
CASZ1                 0.014   castor homolog 1, zinc finger isoform a 
MAP9                  0.014   aster-associated protein 
LOC727832             0.014   golgi autoantigen, golgin subfamily a-like 
CALD1                 0.013   caldesmon 1 isoform 1 
CCDC112               0.013   coiled-coil domain containing 112 isoform 1 
CCDC112               0.013   coiled-coil domain containing 112 isoform 2 
KIAA1407              0.013   hypothetical protein LOC57577 
LOC440243             0.013   PREDICTED: Putative golgin subfamily A member 6-lik...
MYO10                 0.013   myosin X 
BAT2D1                0.013   HBxAg transactivated protein 2 
CGN                   0.012   cingulin 
SFRS11                0.012   splicing factor, arginine/serine-rich 11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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