Guide to the Human Genome
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Name: REXO4 Sequence: fasta or formatted (422aa) NCBI GI: 76781492
Description:

XPMC2 prevents mitotic catastrophe 2 homolog

Referenced in:

Interferon
RNases and RNA Stability

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         39           2
 C cysteine            0.9          4           1
 D aspartate           5.0         21           2
 E glutamate           7.8         33           2
 F phenylalanine       1.4          6           1
 G glycine             6.6         28           2
 H histidine           1.7          7           1
 I isoleucine          3.6         15           2
 K lysine             13.7         58           4
 L leucine             6.4         27           2
 M methionine          2.4         10           1
 N asparagine          1.9          8           1
 P proline             7.8         33           2
 Q glutamine           5.2         22           2
 R arginine            5.9         25           2
 S serine              7.1         30           2
 T threonine           3.3         14           1
 V valine              7.3         31           2
 W tryptophan          1.2          5           1
 Y tyrosine            1.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   XPMC2 prevents mitotic catastrophe 2 homolog 
AEN                   0.155   interferon stimulated exonuclease gene 20kDa-like 1...
ISG20L2               0.138   interferon stimulated exonuclease gene 20kDa-like 2 ...
ISG20                 0.109   interferon stimulated exonuclease 
PAN2                  0.049   PAN2 polyA specific ribonuclease subunit homolog is...
PAN2                  0.049   PAN2 polyA specific ribonuclease subunit homolog is...
LOC81691              0.048   exonuclease NEF-sp isoform 2 
LOC81691              0.048   exonuclease NEF-sp isoform 1 
REXO1                 0.040   transcription elongation factor B polypeptide 3 bin...
LOC100288562          0.038   PREDICTED: hypothetical protein XP_002342903 
LOC100288527          0.038   PREDICTED: hypothetical protein XP_002342902 
LOC100288500          0.038   PREDICTED: hypothetical protein XP_002342901 
LOC100288470          0.038   PREDICTED: hypothetical protein XP_002342900 
LOC100289448          0.038   PREDICTED: hypothetical protein XP_002342913, parti...
REXO1L1               0.038   exonuclease GOR 
NEFH                  0.031   neurofilament, heavy polypeptide 200kDa 
TRDN                  0.029   triadin 
EIF5B                 0.021   eukaryotic translation initiation factor 5B 
MYST3                 0.021   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.021   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.021   MYST histone acetyltransferase (monocytic leukemia)...
C16orf88              0.020   hypothetical protein LOC400506 
NSBP1                 0.018   nucleosomal binding protein 1 
SRRM2                 0.018   splicing coactivator subunit SRm300 
ZC3H13                0.018   zinc finger CCCH-type containing 13 
MAP1B                 0.018   microtubule-associated protein 1B 
TTN                   0.017   titin isoform N2-A 
TTN                   0.016   titin isoform novex-2 
TTN                   0.016   titin isoform novex-1 
TTN                   0.016   titin isoform N2-B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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