Guide to the Human Genome
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Name: GABRQ Sequence: fasta or formatted (632aa) NCBI GI: 8924258
Description:

gamma-aminobutyric acid (GABA) receptor, theta precursor

Referenced in:

GABA and Glycine

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         31           2
 C cysteine            1.7         11           1
 D aspartate           6.2         39           2
 E glutamate           5.5         35           2
 F phenylalanine       5.1         32           2
 G glycine             5.4         34           2
 H histidine           3.3         21           2
 I isoleucine          5.9         37           2
 K lysine              3.2         20           1
 L leucine             9.7         61           3
 M methionine          2.1         13           1
 N asparagine          4.4         28           2
 P proline             5.1         32           2
 Q glutamine           3.5         22           2
 R arginine            5.5         35           2
 S serine              9.0         57           3
 T threonine           6.2         39           3
 V valine              7.1         45           3
 W tryptophan          1.7         11           1
 Y tyrosine            4.6         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   gamma-aminobutyric acid (GABA) receptor, theta precur... 
GABRB2                0.271   gamma-aminobutyric acid (GABA) A receptor, beta 2 iso...
GABRB2                0.271   gamma-aminobutyric acid (GABA) A receptor, beta 2 is...
GABRB3                0.270   gamma-aminobutyric acid (GABA) A receptor, beta 3 is...
GABRB3                0.270   gamma-aminobutyric acid (GABA) A receptor, beta 3 iso...
GABRB1                0.270   gamma-aminobutyric acid (GABA) A receptor, beta 1 p...
GABRD                 0.199   gamma-aminobutyric acid (GABA) A receptor, delta pre...
GLRA1                 0.187   glycine receptor, alpha 1 isoform 2 precursor [Homo...
GABRR1                0.186   gamma-aminobutyric acid (GABA) receptor, rho 1 [Hom...
GLRA1                 0.184   glycine receptor, alpha 1 isoform 1 precursor [Homo...
GLRA2                 0.184   glycine receptor, alpha 2 isoform B 
GLRA2                 0.184   glycine receptor, alpha 2 isoform A 
GLRA2                 0.184   glycine receptor, alpha 2 isoform A 
GABRR3                0.182   gamma-aminobutyric acid (GABA) receptor, rho 3 [Hom...
GLRA4                 0.181   glycine receptor, alpha 4 precursor 
GABRR2                0.180   gamma-aminobutyric acid (GABA) receptor, rho 2 prec...
GLRA3                 0.178   glycine receptor, alpha 3 isoform b 
GLRA3                 0.178   glycine receptor, alpha 3 isoform a 
GABRP                 0.178   gamma-aminobutyric acid (GABA) A receptor, pi 
GABRG3                0.174   gamma-aminobutyric acid (GABA) A receptor, gamma 3 ...
GABRG2                0.170   gamma-aminobutyric acid A receptor, gamma 2 isoform ...
GABRG2                0.170   gamma-aminobutyric acid A receptor, gamma 2 isoform ...
GABRA6                0.166   gamma-aminobutyric acid A receptor, alpha 6 precurs...
GABRG1                0.162   gamma-aminobutyric acid A receptor, gamma 1 precurso...
GABRE                 0.161   gamma-aminobutyric acid (GABA) A receptor, epsilon p...
GLRB                  0.160   glycine receptor, beta 
GABRA1                0.160   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.160   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.160   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.160   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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