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Search of human proteins with 193290128
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|193290128 signal peptidase complex subunit 1 homolog [Homo
sapiens]
(169 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|193290128 signal peptidase complex subunit 1 homolog [Homo sa... 352 1e-97
gi|116235485 delta-notch-like EGF repeat-containing transmembran... 37 0.011
gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens] 33 0.089
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 33 0.12
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 33 0.15
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 32 0.20
gi|21389577 hypothetical protein LOC146705 [Homo sapiens] 32 0.20
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 32 0.34
gi|7019381 fibronectin leucine rich transmembrane protein 2 [Hom... 32 0.34
gi|134031945 SCO-spondin [Homo sapiens] 32 0.34
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 31 0.44
gi|239755832 PREDICTED: hypothetical protein [Homo sapiens] 31 0.44
gi|239744639 PREDICTED: hypothetical protein XP_002343210 [Homo ... 31 0.44
gi|169191513 PREDICTED: hypothetical protein isoform 1 [Homo sap... 31 0.44
gi|57528101 hypothetical protein LOC728130 [Homo sapiens] 31 0.44
gi|190358526 hypothetical protein LOC54785 [Homo sapiens] 31 0.44
gi|150170710 hypothetical protein LOC728118 [Homo sapiens] 31 0.44
gi|20070193 nuclear receptor subfamily 5, group A, member 1 [Hom... 31 0.58
gi|145386517 phostensin [Homo sapiens] 31 0.58
gi|199559805 phostensin [Homo sapiens] 31 0.58
gi|23111007 hypothetical protein LOC79018 [Homo sapiens] 31 0.58
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 30 0.76
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 30 0.76
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 30 0.76
gi|169217659 PREDICTED: similar to ectonucleotide pyrophosphatas... 30 0.99
gi|239752810 PREDICTED: hypothetical protein [Homo sapiens] 30 0.99
gi|169167316 PREDICTED: similar to ectonucleotide pyrophosphatas... 30 0.99
gi|239744425 PREDICTED: hypothetical protein XP_002343141 [Homo ... 30 0.99
gi|239742740 PREDICTED: hypothetical protein XP_002342615 [Homo ... 30 0.99
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 30 0.99
>gi|193290128 signal peptidase complex subunit 1 homolog [Homo
sapiens]
Length = 169
Score = 352 bits (902), Expect = 1e-97
Identities = 169/169 (100%), Positives = 169/169 (100%)
Query: 1 MARGGDTGCTGPSETSASGAAAIALPGLEGPATDAQCQTLPLTVLKSRSPSPRSLPPALS 60
MARGGDTGCTGPSETSASGAAAIALPGLEGPATDAQCQTLPLTVLKSRSPSPRSLPPALS
Sbjct: 1 MARGGDTGCTGPSETSASGAAAIALPGLEGPATDAQCQTLPLTVLKSRSPSPRSLPPALS 60
Query: 61 CPPPQPAMLEHLSSLPTQMDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVM 120
CPPPQPAMLEHLSSLPTQMDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVM
Sbjct: 61 CPPPQPAMLEHLSSLPTQMDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVM 120
Query: 121 AGFAFSCLLTLPPWPIYRRHPLKWLPVQESSTDDKKPGERKIKRHAKNN 169
AGFAFSCLLTLPPWPIYRRHPLKWLPVQESSTDDKKPGERKIKRHAKNN
Sbjct: 121 AGFAFSCLLTLPPWPIYRRHPLKWLPVQESSTDDKKPGERKIKRHAKNN 169
>gi|116235485 delta-notch-like EGF repeat-containing transmembrane
[Homo sapiens]
Length = 737
Score = 36.6 bits (83), Expect = 0.011
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 9 CTGPSETSASGAAAIALPGLEGPATDAQCQTLPLTVLKSRSPSPRSLPPALSCPPPQPAM 68
C+ S +S+ G I G EGP + +LP T + S +PR L P + P +
Sbjct: 108 CSSSSSSSSDGYLCICNEGYEGPNCEQALPSLPATGW-TESMAPRQLQPVPATQEPDKIL 166
Query: 69 --LEHLSSLPTQMDYKGQKLAEQMFQGI 94
+ +LPT GQK+ E + +
Sbjct: 167 PRSQATVTLPTWQPKTGQKVVEMKWDQV 194
>gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens]
Length = 291
Score = 33.5 bits (75), Expect = 0.089
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Query: 4 GGDTGCTGPSETSASGAAAIALPGLEGPATDAQCQTLPLTVLKS---RSPSPRSLPPALS 60
GG G T PS ++ GL P DA ++ L++ + R P+ R LP A+
Sbjct: 49 GGRPGATYPSLPAS-------FAGLGAPFEDAGSYSVNLSLAPAGVIRVPAHRPLPGAV- 100
Query: 61 CPPPQPAMLEHLSSLPT 77
PPP P+ L + S+PT
Sbjct: 101 -PPPLPSALPAMPSVPT 116
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 33.1 bits (74), Expect = 0.12
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 2 ARGGDTGCTGPSETSASGAAAIALPGLEGPATDAQCQTLPLTVLKSRSPSPRSLPPALSC 61
ARG PS+ G A+ P + P DA PL+ +PSP + PP+ S
Sbjct: 250 ARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSA-PPSPSA 308
Query: 62 PPPQPAMLEHLSSLPTQ 78
PP + ++ P+Q
Sbjct: 309 PPSLQTLPSPPATPPSQ 325
Score = 30.0 bits (66), Expect = 0.99
Identities = 23/73 (31%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 24 ALPGLEGPATDAQCQTLPLTVLKSRSPSPRSLPPALSCP----PPQPAMLEHLSSLPTQM 79
A L P A LP L + P PPAL+ P PP P LS L T
Sbjct: 326 ATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPS 385
Query: 80 DYKGQKLAEQMFQ 92
LA + Q
Sbjct: 386 PQAPNALAVHLLQ 398
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 32.7 bits (73), Expect = 0.15
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 11 GPSETSASGAAAIALPGLEGPATDAQCQTLPLTVLKSRSPSPRSLPPALSCPPPQPAML 69
GPS S S ++ P P Q +PL L SP +S+ PA+ PP A L
Sbjct: 823 GPSPASPSPEPPVSKPVASSPTEQVPSQEMPL--LARPSPPVQSVSPAVPTPPSMSAAL 879
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 32.3 bits (72), Expect = 0.20
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 2 ARGGDTGCTGPSETSASGAAAIALPGLEGPATDAQCQTLPLTVLKSRSPSP-----RSLP 56
ARG PS+ G A+ P + P DA PL+ +PSP R +P
Sbjct: 259 ARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSGTKARPVP 318
Query: 57 PALSCPPPQPAMLEHLSSLPTQM 79
P + P PA L L T +
Sbjct: 319 PPDNAATPLPATLPPSPPLATPL 341
Score = 31.2 bits (69), Expect = 0.44
Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 18 SGAAAIALPGLEGPATDAQCQTL----PLTVLKSRSPS-----PRSLPPALSCPPPQPAM 68
+ +A + P LE P A C PLT +PS P PPAL+ PP Q
Sbjct: 548 TASAPLTTPHLETPPCPAPCPLQAPPSPLTTPPPETPSSIATPPPQAPPALASPPLQGLP 607
Query: 69 LEHLSSLPT 77
LS L T
Sbjct: 608 SPPLSPLAT 616
Score = 30.4 bits (67), Expect = 0.76
Identities = 29/89 (32%), Positives = 34/89 (38%), Gaps = 10/89 (11%)
Query: 10 TGPSETSASGAAAIALPGLEGPATDAQ--CQTLPLTVLKSRSPSPRSLPPALSCP----P 63
T P ET +S IA P + P A Q LP L + P PP L+ P P
Sbjct: 578 TPPPETPSS----IATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAP 633
Query: 64 PQPAMLEHLSSLPTQMDYKGQKLAEQMFQ 92
P P LS L T LA + Q
Sbjct: 634 PSPPASPPLSPLATPSPQAPNALAVHLLQ 662
>gi|21389577 hypothetical protein LOC146705 [Homo sapiens]
Length = 525
Score = 32.3 bits (72), Expect = 0.20
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 15 TSASGAAAIALPGLEGPATDAQ--------CQTLPLTVLKSRSPSPRSLPPALSCPPPQP 66
TSA ALPG TDA Q L T + SRSP+P S P+ P P P
Sbjct: 361 TSAEPGPTAALPGPSDLLTDAVPLPGSQVFLQPLSSTPVSSRSPAPSSGMPSSPVPTPPP 420
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 31.6 bits (70), Expect = 0.34
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 4 GGDTGCTGPSETSASGAAAIALPGLEGPAT-DAQCQTLPLTVLKSRSPSPRSLPPALSCP 62
GG G +G S G G GP D + P K+RS P PP L P
Sbjct: 1402 GGKAGSSGSSSGGGGGGPG----GRTGPGRGDKRSWPSP----KNRSRPPEERPPGLPLP 1453
Query: 63 PPQPA 67
PP P+
Sbjct: 1454 PPPPS 1458
>gi|7019381 fibronectin leucine rich transmembrane protein 2 [Homo
sapiens]
Length = 660
Score = 31.6 bits (70), Expect = 0.34
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 14/84 (16%)
Query: 9 CTGPSETSASGAAAIALPGLEGPATDAQCQTLPLTVLKSRSPSPRSLPPALSCP------ 62
C GP + + + L P T LPL + SP + PP LS P
Sbjct: 339 CQGPEQVRGMAVRELNMNLLSCPTTTPG---LPLFTPAPSTASPTTQPPTLSIPNPSRSY 395
Query: 63 -PPQPAMLEHLSSLPTQMDYKGQK 85
PP P S LPT D+ G++
Sbjct: 396 TPPTPT----TSKLPTIPDWDGRE 415
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 31.6 bits (70), Expect = 0.34
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 20/90 (22%)
Query: 8 GCTGPSE-----TSASGAAAIALPG--LEGPATDAQCQT-------------LPLTVLKS 47
GC P E TSA+GA PG L+ + +C+ LPL+
Sbjct: 4471 GCIPPEECNCWHTSAAGAGMTLAPGDRLQLGCKECECRRGELHCTSQGCQGLLPLSEWSE 4530
Query: 48 RSPSPRSLPPALSCPPPQPAMLEHLSSLPT 77
SP LPP+ P + A+ EH PT
Sbjct: 4531 WSPCGPCLPPSALAPASRTALEEHWLRDPT 4560
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 31.2 bits (69), Expect = 0.44
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 2 ARGGDTGCTGPSETSASGAAAIALPGLEGPATDAQCQTLPLTVLKSRSPSPRSLPPALSC 61
ARG PS+ G A+ P + P DA PL+ +PSP S
Sbjct: 259 ARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSP-SAALQSQA 317
Query: 62 PPPQPAMLEHLSSLPTQM 79
PP PA H SSL Q+
Sbjct: 318 PPTLPA-TPHSSSLTCQL 334
Score = 30.0 bits (66), Expect = 0.99
Identities = 23/73 (31%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 24 ALPGLEGPATDAQCQTLPLTVLKSRSPSPRSLPPALSCP----PPQPAMLEHLSSLPTQM 79
A L P A LP L + P PPAL+ P PP P LS L T
Sbjct: 365 ATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPS 424
Query: 80 DYKGQKLAEQMFQ 92
LA + Q
Sbjct: 425 PQAPNALAVHLLQ 437
>gi|239755832 PREDICTED: hypothetical protein [Homo sapiens]
Length = 258
Score = 31.2 bits (69), Expect = 0.44
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 13/82 (15%)
Query: 16 SASGAAAIALPGLEGPATDAQCQTLPLTVLKSRSPSPRSLPPALSCPPPQPA---MLEHL 72
+A+ AAA A A A+CQ+ L L P P S P LS P PQPA + H
Sbjct: 166 TAAAAAATA-------AAAARCQSRLLASLLL--PRPGSPLPLLSLPSPQPARQSLTPHS 216
Query: 73 SSLPTQM-DYKGQKLAEQMFQG 93
S P+Q D+K ++ QG
Sbjct: 217 HSSPSQRNDWKPGAHTDRSAQG 238
>gi|239744639 PREDICTED: hypothetical protein XP_002343210 [Homo
sapiens]
Length = 258
Score = 31.2 bits (69), Expect = 0.44
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 13/82 (15%)
Query: 16 SASGAAAIALPGLEGPATDAQCQTLPLTVLKSRSPSPRSLPPALSCPPPQPA---MLEHL 72
+A+ AAA A A A+CQ+ L L P P S P LS P PQPA + H
Sbjct: 166 TAAAAAATA-------AAAARCQSRLLASLLL--PRPGSPLPLLSLPSPQPARQSLTPHS 216
Query: 73 SSLPTQM-DYKGQKLAEQMFQG 93
S P+Q D+K ++ QG
Sbjct: 217 HSSPSQRNDWKPGAHTDRSAQG 238
>gi|169191513 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 878
Score = 31.2 bits (69), Expect = 0.44
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 8 GCTGPSETSASGAAAIALPGLEGPATDAQCQTLPLTVLKSRSPSPRSLPPALSCPPP 64
GC GPS AS + + GP AQ QTL LT +P +L + CPPP
Sbjct: 192 GC-GPSGAGASNVF-VQMRTEVGPVKAAQAQTLVLTQAPLVWQAPGALCGGVVCPPP 246
>gi|57528101 hypothetical protein LOC728130 [Homo sapiens]
Length = 557
Score = 31.2 bits (69), Expect = 0.44
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 8 GCTGPSETSASGAAAIALPGLEGPATDAQCQTLPLTVLKSRSPSPRSLPPALSCPPP 64
GC GPS AS + + GP AQ QTL LT +P +L + CPPP
Sbjct: 120 GC-GPSGAGASNVF-VQMRTEVGPVKAAQAQTLVLTQTPLVWQAPGALCGGVVCPPP 174
>gi|190358526 hypothetical protein LOC54785 [Homo sapiens]
Length = 357
Score = 31.2 bits (69), Expect = 0.44
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 9/71 (12%)
Query: 5 GDTGCTGPSETSASGA--AAIALP-------GLEGPATDAQCQTLPLTVLKSRSPSPRSL 55
G G +G +E+ A G A I+ P G T L L + S +P P
Sbjct: 177 GGAGSSGSAESGAGGGRRATISSPLELEGTVSRHGDLTHFVANNLQLKIRLSGAPPPPPS 236
Query: 56 PPALSCPPPQP 66
PA CP P P
Sbjct: 237 APARPCPAPAP 247
>gi|150170710 hypothetical protein LOC728118 [Homo sapiens]
Length = 878
Score = 31.2 bits (69), Expect = 0.44
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 8 GCTGPSETSASGAAAIALPGLEGPATDAQCQTLPLTVLKSRSPSPRSLPPALSCPPP 64
GC GPS AS + + GP AQ QTL LT +P +L + CPPP
Sbjct: 192 GC-GPSGAGASNVF-VQMRTEVGPVKAAQAQTLVLTQAPLVWQAPGALCGGVVCPPP 246
>gi|20070193 nuclear receptor subfamily 5, group A, member 1 [Homo
sapiens]
Length = 461
Score = 30.8 bits (68), Expect = 0.58
Identities = 17/56 (30%), Positives = 22/56 (39%)
Query: 11 GPSETSASGAAAIALPGLEGPATDAQCQTLPLTVLKSRSPSPRSLPPALSCPPPQP 66
GP + A +A+PG GP P +KS P P + PP P P
Sbjct: 159 GPLGDFGAPALPMAVPGAHGPLAGYLYPAFPGRAIKSEYPEPYASPPQPGLPYGYP 214
>gi|145386517 phostensin [Homo sapiens]
Length = 613
Score = 30.8 bits (68), Expect = 0.58
Identities = 27/104 (25%), Positives = 37/104 (35%), Gaps = 19/104 (18%)
Query: 10 TGPSETSASGAAAIALPGLEGPATDAQ-----CQTLPLTVLKSRSPSPRSLPP------- 57
T E S + PG+E +A+ Q PL L++ P LPP
Sbjct: 353 TQKPEPPESAEKLLESPGVEAGEGEAEKEEAGAQGRPLRALQNCCSVPSPLPPEDAGTGG 412
Query: 58 -------ALSCPPPQPAMLEHLSSLPTQMDYKGQKLAEQMFQGI 94
A+ PP PA L PT G L ++F G+
Sbjct: 413 LRQQEEEAVELQPPPPAPLSPPPPAPTAPQPPGDPLMSRLFYGV 456
>gi|199559805 phostensin [Homo sapiens]
Length = 613
Score = 30.8 bits (68), Expect = 0.58
Identities = 27/104 (25%), Positives = 37/104 (35%), Gaps = 19/104 (18%)
Query: 10 TGPSETSASGAAAIALPGLEGPATDAQ-----CQTLPLTVLKSRSPSPRSLPP------- 57
T E S + PG+E +A+ Q PL L++ P LPP
Sbjct: 353 TQKPEPPESAEKLLESPGVEAGEGEAEKEEAGAQGRPLRALQNCCSVPSPLPPEDAGTGG 412
Query: 58 -------ALSCPPPQPAMLEHLSSLPTQMDYKGQKLAEQMFQGI 94
A+ PP PA L PT G L ++F G+
Sbjct: 413 LRQQEEEAVELQPPPPAPLSPPPPAPTAPQPPGDPLMSRLFYGV 456
>gi|23111007 hypothetical protein LOC79018 [Homo sapiens]
Length = 300
Score = 30.8 bits (68), Expect = 0.58
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 22 AIALPGLEGPAT---DAQCQTLPLTVLKSRSPSPRSLPPALSCPPPQPAMLEHLSSL 75
A A PGL PAT +PL + + +P ++P CPPP A +SL
Sbjct: 48 ARARPGLSLPATLLGSRAAAAVPLPLPPALAPGDPAMPVRTECPPPAGASAASAASL 104
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 30.4 bits (67), Expect = 0.76
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 9 CTGPSETSASGAAAIALPGLEGPATDAQCQTLPLTVLKSRSPSPRSLPPALSCPPPQP 66
C + G A P L G AT LP V PSP SLP + PPP P
Sbjct: 617 CISSPPSLPGGTAISPPPPLSGDATIPPPPPLPEGV---GIPSPSSLPGGTAIPPPPP 671
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 30.4 bits (67), Expect = 0.76
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 9 CTGPSETSASGAAAIALPGLEGPATDAQCQTLPLTVLKSRSPSPRSLPPALSCPPPQP 66
C + G A P L G AT LP V PSP SLP + PPP P
Sbjct: 626 CISSPPSLPGGTAISPPPPLSGDATIPPPPPLPEGV---GIPSPSSLPGGTAIPPPPP 680
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 30.4 bits (67), Expect = 0.76
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 15 TSASGAAAIALPGLEGPATDAQCQTLPLTVLKSRSPSPRSLPPALSCP---PPQPAMLEH 71
T A A++ A P + P A T + + + + +P P +S P PP PA +
Sbjct: 1875 TPAPAASSPAAPVITAPTIPASAPTASVPLAPASASAPAPAPTPVSAPNPAPPAPAQTQA 1934
Query: 72 LSSLPTQ 78
+ P Q
Sbjct: 1935 QTHKPVQ 1941
>gi|169217659 PREDICTED: similar to ectonucleotide
pyrophosphatase/phosphodiesterase 5 [Homo sapiens]
Length = 542
Score = 30.0 bits (66), Expect = 0.99
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 39 TLPLTVLKSRSPSPRSLPPALSC--PPPQPAMLEH 71
TL LT SR+P+P S PP L P P PA +H
Sbjct: 242 TLDLTGPASRAPNPDSAPPKLRILGPAPGPASEDH 276
>gi|239752810 PREDICTED: hypothetical protein [Homo sapiens]
Length = 207
Score = 30.0 bits (66), Expect = 0.99
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 2 ARGGDTGCTGPSETSASGAAAIALPGLEGPATDAQ 36
A+ GC GP E +A AA+ PGLE D Q
Sbjct: 86 AKAPQEGCGGPPELTARRGAALRGPGLEEVEADEQ 120
>gi|169167316 PREDICTED: similar to ectonucleotide
pyrophosphatase/phosphodiesterase 5 [Homo sapiens]
Length = 542
Score = 30.0 bits (66), Expect = 0.99
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 39 TLPLTVLKSRSPSPRSLPPALSC--PPPQPAMLEH 71
TL LT SR+P+P S PP L P P PA +H
Sbjct: 242 TLDLTGPASRAPNPDSAPPKLRILGPAPGPASEDH 276
>gi|239744425 PREDICTED: hypothetical protein XP_002343141 [Homo
sapiens]
Length = 228
Score = 30.0 bits (66), Expect = 0.99
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 15 TSASGAAAIALPGLEGPA---------TDAQCQTLPLTVLKSRSPSPRSLPPALSCPPP 64
+S A A++ P + P+ T+AQ P + SR+ RS P LSCPPP
Sbjct: 12 SSVLQATAVSKPDPDCPSCHLYFIDEETEAQGLREPCSEAHSRAAGLRSSLPVLSCPPP 70
>gi|239742740 PREDICTED: hypothetical protein XP_002342615 [Homo
sapiens]
Length = 159
Score = 30.0 bits (66), Expect = 0.99
Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 10 TGPSETSASG---AAAIALPGLEGPA---TDAQCQTLPLTVLKSRSPSPRSLPPALSCPP 63
+G E SG AAA +LP + P + AQ Q L T+ P P SLP AL P
Sbjct: 79 SGSPEEGVSGHGPAAAASLPRAQVPTPPPSHAQPQPLQRTL-----PPPTSLPAALDPAP 133
Query: 64 PQPA 67
+PA
Sbjct: 134 SRPA 137
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo
sapiens]
Length = 2462
Score = 30.0 bits (66), Expect = 0.99
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 6 DTGCTGPSETSASGAAAIALPGLEGPATDAQCQTLPLTVLKSR-SPSPRSLPPALSCPPP 64
DTG GP + GA P D T P ++ +P+P PP+ S PPP
Sbjct: 744 DTGQNGPKPPATLGADGPPPGPPTPPPEDIPAPTEPTPASEATGAPTPPPAPPSPSAPPP 803
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,086,784
Number of Sequences: 37866
Number of extensions: 413281
Number of successful extensions: 3546
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 166
Number of HSP's that attempted gapping in prelim test: 3254
Number of HSP's gapped (non-prelim): 423
length of query: 169
length of database: 18,247,518
effective HSP length: 95
effective length of query: 74
effective length of database: 14,650,248
effective search space: 1084118352
effective search space used: 1084118352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.