Guide to the Human Genome
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Name: LOC100293073 Sequence: fasta or formatted (207aa) NCBI GI: 239752810
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.5         28           3
 C cysteine            2.4          5           1
 D aspartate           1.9          4           2
 E glutamate           5.8         12           2
 F phenylalanine       1.4          3           1
 G glycine            10.6         22           2
 H histidine           2.4          5           1
 I isoleucine          1.4          3           1
 K lysine              2.9          6           2
 L leucine            10.1         21           4
 M methionine          1.0          2           1
 N asparagine          0.5          1           1
 P proline            11.6         24           2
 Q glutamine           5.8         12           3
 R arginine            8.7         18           2
 S serine              4.8         10           1
 T threonine           5.3         11           2
 V valine              8.2         17           3
 W tryptophan          1.0          2           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291378          0.689   PREDICTED: hypothetical protein XP_002346429 
LOC100288348          0.462   PREDICTED: hypothetical protein XP_002342127 
LOC100293935          0.038   PREDICTED: hypothetical protein 
LOC100287289          0.038   PREDICTED: hypothetical protein 
LOC100287289          0.038   PREDICTED: hypothetical protein XP_002343656 
OTOG                  0.033   PREDICTED: otogelin isoform 2 
OTOG                  0.033   PREDICTED: otogelin isoform 1 
OTOG                  0.025   PREDICTED: otogelin isoform 1 
OTOG                  0.025   PREDICTED: otogelin isoform 2 
OTOG                  0.025   PREDICTED: otogelin isoform 2 
OTOG                  0.025   PREDICTED: otogelin isoform 1 
LOC100130255          0.023   PREDICTED: hypothetical protein 
LOC100130255          0.023   PREDICTED: hypothetical protein 
LOC100130255          0.023   PREDICTED: hypothetical protein 
GGN                   0.023   gametogenetin 
ANO8                  0.023   anoctamin 8 
LOC100291634          0.023   PREDICTED: hypothetical protein XP_002346062 
LOC100291096          0.023   PREDICTED: hypothetical protein XP_002346952 
LOC100287232          0.023   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.023   PREDICTED: hypothetical protein 
NET1                  0.020   neuroepithelial cell transforming gene 1 isoform 1 ...
NET1                  0.020   neuroepithelial cell transforming gene 1 isoform 2 [...
WIPF3                 0.020   WAS/WASL interacting protein family, member 3 [Homo...
LOC100293975          0.018   PREDICTED: hypothetical protein 
WIPF1                 0.018   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.018   WAS/WASL interacting protein family, member 1 
ZBTB3                 0.018   zinc finger and BTB domain containing 3 
CNOT3                 0.018   CCR4-NOT transcription complex, subunit 3 
MPND                  0.018   MPN domain containing isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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