Guide to the Human Genome
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Name: NR5A1 Sequence: fasta or formatted (461aa) NCBI GI: 20070193
Description:

nuclear receptor subfamily 5, group A, member 1

Referenced in:

Adrenals
Nuclear Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         34           2
 C cysteine            3.7         17           1
 D aspartate           4.8         22           1
 E glutamate           5.9         27           1
 F phenylalanine       3.9         18           2
 G glycine             7.2         33           2
 H histidine           2.6         12           1
 I isoleucine          2.8         13           2
 K lysine              5.9         27           2
 L leucine            13.4         62           3
 M methionine          2.6         12           1
 N asparagine          2.6         12           2
 P proline             8.9         41           6
 Q glutamine           6.5         30           2
 R arginine            5.2         24           2
 S serine              3.7         17           1
 T threonine           3.5         16           2
 V valine              5.2         24           1
 W tryptophan          0.4          2           1
 Y tyrosine            3.9         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear receptor subfamily 5, group A, member 1 [Hom... 
NR5A2                 0.574   nuclear receptor subfamily 5, group A, member 2 isof...
NR5A2                 0.574   nuclear receptor subfamily 5, group A, member 2 isofo...
NR6A1                 0.135   nuclear receptor subfamily 6, group A, member 1 isof...
NR6A1                 0.135   nuclear receptor subfamily 6, group A, member 1 isof...
ESRRB                 0.101   estrogen-related receptor beta 
ESRRA                 0.100   estrogen-related receptor alpha 
ESRRG                 0.100   estrogen-related receptor gamma isoform 2 
ESRRG                 0.100   estrogen-related receptor gamma isoform 2 
ESRRG                 0.100   estrogen-related receptor gamma isoform 1 
ESRRG                 0.100   estrogen-related receptor gamma isoform 2 
NR4A1                 0.094   nuclear receptor subfamily 4, group A, member 1 [Hom...
NR4A1                 0.094   nuclear receptor subfamily 4, group A, member 1 [Hom...
RXRA                  0.093   retinoid X receptor, alpha 
NR1D1                 0.093   nuclear receptor subfamily 1, group D, member 1 [Hom...
NR4A2                 0.093   nuclear receptor subfamily 4, group A, member 2 [Homo...
NR4A3                 0.093   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.093   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.093   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.093   nuclear receptor subfamily 4, group A, member 3 isof...
RXRB                  0.092   retinoid X receptor, beta 
RXRG                  0.090   retinoid X receptor, gamma isoform a 
RORB                  0.090   RAR-related orphan receptor B 
RORA                  0.089   RAR-related orphan receptor A isoform d 
RORA                  0.089   RAR-related orphan receptor A isoform c 
RORA                  0.089   RAR-related orphan receptor A isoform b 
RORA                  0.089   RAR-related orphan receptor A isoform a 
RORC                  0.087   RAR-related orphan receptor C isoform b 
RORC                  0.087   RAR-related orphan receptor C isoform a 
THRA                  0.086   thyroid hormone receptor, alpha isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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