Guide to the Human Genome
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Name: LOC100289011 Sequence: fasta or formatted (258aa) NCBI GI: 239744639
Description:

PREDICTED: hypothetical protein XP_002343210

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4         32           6
 C cysteine            2.7          7           1
 D aspartate           3.1          8           1
 E glutamate           0.8          2           1
 F phenylalanine       1.6          4           1
 G glycine             8.5         22           2
 H histidine           3.5          9           1
 I isoleucine          1.9          5           1
 K lysine              1.9          5           1
 L leucine            10.5         27           3
 M methionine          1.2          3           1
 N asparagine          0.8          2           1
 P proline             8.1         21           2
 Q glutamine           4.7         12           1
 R arginine           10.9         28           3
 S serine             19.0         49           4
 T threonine           3.5          9           1
 V valine              2.3          6           1
 W tryptophan          1.9          5           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343210 
LOC100292681          1.000   PREDICTED: hypothetical protein 
LOC100293268          0.030   PREDICTED: hypothetical protein 
MUC16                 0.028   mucin 16 
TNRC18                0.026   trinucleotide repeat containing 18 
LOC100133915          0.024   PREDICTED: hypothetical protein 
KRTAP4-6              0.024   PREDICTED: keratin associated protein 4.6 
SRRM2                 0.024   splicing coactivator subunit SRm300 
CCAR1                 0.024   cell-cycle and apoptosis regulatory protein 1 
LOC643355             0.024   PREDICTED: hypothetical protein 
LOC643355             0.024   PREDICTED: hypothetical protein 
FLJ22184              0.022   PREDICTED: hypothetical protein FLJ22184 
LOC388279             0.022   PREDICTED: hypothetical protein 
KDM6B                 0.020   lysine (K)-specific demethylase 6B 
NKX6-1                0.020   NK6 transcription factor related, locus 1 
MUC21                 0.020   mucin 21 
GATA4                 0.018   GATA binding protein 4 
PSRC1                 0.018   proline/serine-rich coiled-coil 1 isoform a 
PSRC1                 0.018   proline/serine-rich coiled-coil 1 isoform a 
ZDHHC8                0.018   zinc finger, DHHC domain containing 8 
NACAD                 0.016   NAC alpha domain containing 
SHOX                  0.016   short stature homeobox isoform SHOXa 
WNK4                  0.016   WNK lysine deficient protein kinase 4 
NACAD                 0.016   PREDICTED: NAC alpha domain containing 
LOC399829             0.016   PREDICTED: FLJ43861 protein 
NACAD                 0.016   PREDICTED: NAC alpha domain containing 
NACAD                 0.016   PREDICTED: NAC alpha domain containing 
NACAD                 0.016   PREDICTED: NAC alpha domain containing 
CHD9                  0.016   chromodomain helicase DNA binding protein 9 
HCN4                  0.016   hyperpolarization activated cyclic nucleotide-gated p...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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