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Search of human proteins with 190358526
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|190358526 hypothetical protein LOC54785 [Homo sapiens]
(357 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|190358526 hypothetical protein LOC54785 [Homo sapiens] 717 0.0
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 53 5e-07
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 49 9e-06
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 49 9e-06
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 49 9e-06
gi|60097902 filaggrin [Homo sapiens] 45 8e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 45 1e-04
gi|6912492 mitogen-activated protein kinase 8 interacting protei... 45 1e-04
gi|7706537 mitogen-activated protein kinase 8 interacting protei... 45 1e-04
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 44 2e-04
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 44 2e-04
gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens] 44 2e-04
gi|41152235 ubiquitin specific protease 51 [Homo sapiens] 44 3e-04
gi|24586686 voltage-dependent calcium channel gamma-8 subunit [H... 44 3e-04
gi|55741677 SET domain containing 1A [Homo sapiens] 43 4e-04
gi|154354974 phosphatase and actin regulator 2 isoform 3 [Homo s... 43 4e-04
gi|154354968 phosphatase and actin regulator 2 isoform 1 [Homo s... 43 4e-04
gi|239753407 PREDICTED: hypothetical protein [Homo sapiens] 43 5e-04
gi|222352122 hypothetical protein LOC284297 [Homo sapiens] 42 6e-04
gi|239508698 PREDICTED: similar to mucin [Homo sapiens] 42 6e-04
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi... 42 8e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens] 42 8e-04
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 42 8e-04
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 42 8e-04
gi|163965366 nascent polypeptide-associated complex alpha subuni... 42 8e-04
gi|239754474 PREDICTED: similar to mucin [Homo sapiens] 42 0.001
gi|153791497 ciliary rootlet coiled-coil [Homo sapiens] 42 0.001
gi|4503355 dedicator of cytokinesis 1 [Homo sapiens] 42 0.001
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 42 0.001
gi|19924097 synapsin I isoform Ib [Homo sapiens] 42 0.001
>gi|190358526 hypothetical protein LOC54785 [Homo sapiens]
Length = 357
Score = 717 bits (1850), Expect = 0.0
Identities = 357/357 (100%), Positives = 357/357 (100%)
Query: 1 MESSRGRPGPETDLLAVAEHQALVFGGGPGRTSSEPPAGLRVSGEEETENVGGANRHPRT 60
MESSRGRPGPETDLLAVAEHQALVFGGGPGRTSSEPPAGLRVSGEEETENVGGANRHPRT
Sbjct: 1 MESSRGRPGPETDLLAVAEHQALVFGGGPGRTSSEPPAGLRVSGEEETENVGGANRHPRT 60
Query: 61 SPKTSSCGVVHRPEREALENEPGPQGTLSGAGSRRGAPGAEHEPSLSSRHKNPAPPEGKP 120
SPKTSSCGVVHRPEREALENEPGPQGTLSGAGSRRGAPGAEHEPSLSSRHKNPAPPEGKP
Sbjct: 61 SPKTSSCGVVHRPEREALENEPGPQGTLSGAGSRRGAPGAEHEPSLSSRHKNPAPPEGKP 120
Query: 121 SSGRDCRRGGPGGGMDVEQQEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAG 180
SSGRDCRRGGPGGGMDVEQQEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAG
Sbjct: 121 SSGRDCRRGGPGGGMDVEQQEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAG 180
Query: 181 SSGSAESGAGGGRRATISSPLELEGTVSRHGDLTHFVANNLQLKIRLSGAPPPPPSAPAR 240
SSGSAESGAGGGRRATISSPLELEGTVSRHGDLTHFVANNLQLKIRLSGAPPPPPSAPAR
Sbjct: 181 SSGSAESGAGGGRRATISSPLELEGTVSRHGDLTHFVANNLQLKIRLSGAPPPPPSAPAR 240
Query: 241 PCPAPAPTPTPAIPPIDPEVLRDLERLSRELGGRVDRLLRGLGGAVQELTALSVGCIQTY 300
PCPAPAPTPTPAIPPIDPEVLRDLERLSRELGGRVDRLLRGLGGAVQELTALSVGCIQTY
Sbjct: 241 PCPAPAPTPTPAIPPIDPEVLRDLERLSRELGGRVDRLLRGLGGAVQELTALSVGCIQTY 300
Query: 301 RDAVDSLGEAVDMSIKGMYTLLARCEELERALQPVQGLARQVRDIRRTLEVLEALCK 357
RDAVDSLGEAVDMSIKGMYTLLARCEELERALQPVQGLARQVRDIRRTLEVLEALCK
Sbjct: 301 RDAVDSLGEAVDMSIKGMYTLLARCEELERALQPVQGLARQVRDIRRTLEVLEALCK 357
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 52.8 bits (125), Expect = 5e-07
Identities = 75/264 (28%), Positives = 86/264 (32%), Gaps = 42/264 (15%)
Query: 3 SSRGRPGPETDLLAVAEHQ-ALVFGGGPGRTSS---EPPAGLRVSGEEETENVGGANRHP 58
SS G G E L+ A A PGR S PP G GGA
Sbjct: 81 SSAGTGGAEPPALSPAPASPARPVSPAPGRRLSLWAVPPGPPLSGGLSPDPKPGGAPTSS 140
Query: 59 RTSPKTSSCGVVHRPEREALENEPGPQGTLSGAGSRRGAPGAEHEPSLSSRHKNPAPPEG 118
R +S PE A PG G GSRR P PP
Sbjct: 141 RRPLLSSPSWGGPEPEGRAGGGIPGSSSPHPGTGSRRLKVA-------------PPPPAP 187
Query: 119 KP-----SSGRDCRRGGPGGGMDVEQQEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLS 173
KP +SG GG G G + E E + S AG S S +
Sbjct: 188 KPCKTVTTSGAKAG-GGKGAGSRLSWPESEGKPRVKGSKSSAGTGASV------SAAATA 240
Query: 174 EACGGAGSSGSAESG--AGGGRRATISSPLELEGTVSRHGDLTHFVANNLQLKIRLSGAP 231
A GG GS+ S G AG G R +S T+ +N L
Sbjct: 241 AAAGGGGSTASTSGGVGAGAGARGKLSPRKGKSKTL-----------DNSDLHPGPPAGS 289
Query: 232 PPPPSAPARPCPAPAPTPTPAIPP 255
PPP + P P PA A T A PP
Sbjct: 290 PPPLTLPPTPSPATAVTAASAQPP 313
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 48.5 bits (114), Expect = 9e-06
Identities = 50/188 (26%), Positives = 66/188 (35%), Gaps = 22/188 (11%)
Query: 27 GGPGRTSSEPPAGLRVSGEEETENVG--GANRHPRTSPKTSSCGVVHRPEREALENEPGP 84
G G+T P G+ V + T G G HP G+ +E + +PGP
Sbjct: 967 GFQGKTGPPGPGGV-VGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGP 1025
Query: 85 QGT--------LSGAGSRRGAPGAEHEPSLSSRH--KNPAPPEGKPSSGRDCRRGGPGG- 133
QG L G RG PGA+ P L + P P G P GP G
Sbjct: 1026 QGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGL 1085
Query: 134 -GMDVEQQEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSSGSAESGAGGG 192
G Q E+ A G + + + R DG+ G G +G A S G
Sbjct: 1086 PGRPGPQGPPGPAGEKGAPGEKGPQGPAGR-------DGVQGPVGLPGPAGPAGSPGEDG 1138
Query: 193 RRATISSP 200
+ I P
Sbjct: 1139 DKGEIGEP 1146
Score = 40.4 bits (93), Expect = 0.002
Identities = 58/227 (25%), Positives = 72/227 (31%), Gaps = 40/227 (17%)
Query: 27 GGPGRTSSEPPAGLRV-SGEEETENVGGANRHPRTSPKTSSCGVVHRPEREALENEPGPQ 85
G PG+ AG GE+ + GA P + G +P E L PGP
Sbjct: 1369 GPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPV 1428
Query: 86 GT--LSGAGSRRGAPGAEHEPSLSSRHKNPAPPEGKPSSGRDCRRGGPGGGMDVEQQEEE 143
G L GA + G PG P L +P K G G PG EQ E+
Sbjct: 1429 GEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPG-----EQGEKG 1483
Query: 144 DNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSSG-SAESGAGGGRRATISSPLE 202
D GS + + G + G G G G G + +T
Sbjct: 1484 DRGLPGTQGSPGAKG-------DGGIPGPAGPLGPPGPPGLPGPQGPKGNKGST------ 1530
Query: 203 LEGTVSRHGDLTHFVANNLQLKIRLSGAPPPPPSAPARPCPAPAPTP 249
G + GD SG P PP S P P P P
Sbjct: 1531 --GPAGQKGD---------------SGLPGPPGS-PGPPGEVIQPLP 1559
Score = 35.4 bits (80), Expect = 0.079
Identities = 56/226 (24%), Positives = 76/226 (33%), Gaps = 38/226 (16%)
Query: 52 GGANRHPRTSPKTSSCGVVHRPEREALENEPGPQ------GTLSGAGSRRGAPGAEHEPS 105
G ++ P S + + + + R AL PGP G + G GS GA G +P
Sbjct: 513 GDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGS-SGAKGESGDPG 571
Query: 106 LSSRH--KNPAPPEGKPSSGRDCRRGGPGG-GMDVEQQEEEDNDEEAAAG-----SRAGR 157
+ P P GKP G+ R G GG GM E + D + G G
Sbjct: 572 PQGPRGVQGPPGPTGKP--GKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGE 629
Query: 158 SFSSRLQDSRSLDGLSEACGGAGSSG-SAESGAGG--GRRATISSPLE-----LEGTVSR 209
DG+ G G G E+G G G R T +P + ++G
Sbjct: 630 RGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGP 689
Query: 210 HGDLTHFVANNLQLKIRLSGAPPPPPSAPARPCPAPAPTPTPAIPP 255
G++ P PP P P P P I P
Sbjct: 690 KGNMG-------------PQGEPGPPGQQGNPGPQGLPGPQGPIGP 722
Score = 33.5 bits (75), Expect = 0.30
Identities = 58/253 (22%), Positives = 81/253 (32%), Gaps = 14/253 (5%)
Query: 6 GRPGPETDLLAVAEHQALVFGGGPGRTSSEPPAGLRVSGEEETENVGGANRHPRTSPKTS 65
G PG + D + E G G P GL+ G + G + P P+
Sbjct: 1132 GSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQ--GPVGAPGIAGGDGEP--GPRGQ 1187
Query: 66 SCGVVHRPEREALENEPGPQGTLSGAGSRRGAPGAEHEPSLSSRHKNPAPPEGKPS---S 122
G+ + E PGP G + G G PG + E P PP + +
Sbjct: 1188 Q-GMFGQKGDEGARGFPGPPGPI-GLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPN 1245
Query: 123 GRDCRRGGPGGGMDVEQQEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSS 182
G D +G PG V E+ EA G + + R G + G AG
Sbjct: 1246 GADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPP 1305
Query: 183 GSAESGAGGGRRATISSPLELEGTVSRHGDLTHFVANNLQLKIRLSGAP----PPPPSAP 238
G+ G + P+ G G+ + + G P PP PS
Sbjct: 1306 GAKGPPGDDGPKGN-PGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGE 1364
Query: 239 ARPCPAPAPTPTP 251
A P P P
Sbjct: 1365 AGPPGPPGKRGPP 1377
Score = 32.7 bits (73), Expect = 0.51
Identities = 37/140 (26%), Positives = 43/140 (30%), Gaps = 19/140 (13%)
Query: 27 GGPGRTSSEPPAGLRVSGEEETENVGGANRHPRTSPKTSSCGVVHRPEREALENEPGPQG 86
G PG P G R GE+ GA P G P +PGP G
Sbjct: 1276 GPPGEAGVGGPKGER--GEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPG 1333
Query: 87 TLSGAGS--------RRGAPGAEHEPSLSSRHKNPAPPEGKPSSGRDCRRGGPGGGMDVE 138
AG G PG P S P PP RG PG
Sbjct: 1334 EPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGK---------RGPPGAAGAEG 1384
Query: 139 QQEEEDNDEEAAAGSRAGRS 158
+Q E+ EA A G++
Sbjct: 1385 RQGEKGAKGEAGAEGPPGKT 1404
Score = 29.3 bits (64), Expect = 5.7
Identities = 40/155 (25%), Positives = 55/155 (35%), Gaps = 23/155 (14%)
Query: 2 ESSRGRPGPETD---LLAVAEHQALVFGGGPGRTSSEPPAGLR-------VSGEEETENV 51
E +GR GP D E L G PG + P G +GE+ V
Sbjct: 825 EGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGV 884
Query: 52 GG-----ANRHPRTSPKTS--SCGVVHRPEREAL---ENEPGPQGTLSGAGSRR--GAPG 99
G R P T P+ S + G +P + + PGP G G + G PG
Sbjct: 885 AGKPGPRGQRGP-TGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPG 943
Query: 100 AEHEPSLSSRHKNPAPPEGKPSSGRDCRRGGPGGG 134
+ P + P P + +G + G PG G
Sbjct: 944 PKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPG 978
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 48.5 bits (114), Expect = 9e-06
Identities = 50/188 (26%), Positives = 66/188 (35%), Gaps = 22/188 (11%)
Query: 27 GGPGRTSSEPPAGLRVSGEEETENVG--GANRHPRTSPKTSSCGVVHRPEREALENEPGP 84
G G+T P G+ V + T G G HP G+ +E + +PGP
Sbjct: 916 GFQGKTGPPGPGGV-VGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGP 974
Query: 85 QGT--------LSGAGSRRGAPGAEHEPSLSSRH--KNPAPPEGKPSSGRDCRRGGPGG- 133
QG L G RG PGA+ P L + P P G P GP G
Sbjct: 975 QGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGL 1034
Query: 134 -GMDVEQQEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSSGSAESGAGGG 192
G Q E+ A G + + + R DG+ G G +G A S G
Sbjct: 1035 PGRPGPQGPPGPAGEKGAPGEKGPQGPAGR-------DGVQGPVGLPGPAGPAGSPGEDG 1087
Query: 193 RRATISSP 200
+ I P
Sbjct: 1088 DKGEIGEP 1095
Score = 40.4 bits (93), Expect = 0.002
Identities = 58/227 (25%), Positives = 72/227 (31%), Gaps = 40/227 (17%)
Query: 27 GGPGRTSSEPPAGLRV-SGEEETENVGGANRHPRTSPKTSSCGVVHRPEREALENEPGPQ 85
G PG+ AG GE+ + GA P + G +P E L PGP
Sbjct: 1318 GPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPV 1377
Query: 86 GT--LSGAGSRRGAPGAEHEPSLSSRHKNPAPPEGKPSSGRDCRRGGPGGGMDVEQQEEE 143
G L GA + G PG P L +P K G G PG EQ E+
Sbjct: 1378 GEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPG-----EQGEKG 1432
Query: 144 DNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSSG-SAESGAGGGRRATISSPLE 202
D GS + + G + G G G G G + +T
Sbjct: 1433 DRGLPGTQGSPGAKG-------DGGIPGPAGPLGPPGPPGLPGPQGPKGNKGST------ 1479
Query: 203 LEGTVSRHGDLTHFVANNLQLKIRLSGAPPPPPSAPARPCPAPAPTP 249
G + GD SG P PP S P P P P
Sbjct: 1480 --GPAGQKGD---------------SGLPGPPGS-PGPPGEVIQPLP 1508
Score = 35.4 bits (80), Expect = 0.079
Identities = 56/226 (24%), Positives = 76/226 (33%), Gaps = 38/226 (16%)
Query: 52 GGANRHPRTSPKTSSCGVVHRPEREALENEPGPQ------GTLSGAGSRRGAPGAEHEPS 105
G ++ P S + + + + R AL PGP G + G GS GA G +P
Sbjct: 462 GDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGS-SGAKGESGDPG 520
Query: 106 LSSRH--KNPAPPEGKPSSGRDCRRGGPGG-GMDVEQQEEEDNDEEAAAG-----SRAGR 157
+ P P GKP G+ R G GG GM E + D + G G
Sbjct: 521 PQGPRGVQGPPGPTGKP--GKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGE 578
Query: 158 SFSSRLQDSRSLDGLSEACGGAGSSG-SAESGAGG--GRRATISSPLE-----LEGTVSR 209
DG+ G G G E+G G G R T +P + ++G
Sbjct: 579 RGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGP 638
Query: 210 HGDLTHFVANNLQLKIRLSGAPPPPPSAPARPCPAPAPTPTPAIPP 255
G++ P PP P P P P I P
Sbjct: 639 KGNMG-------------PQGEPGPPGQQGNPGPQGLPGPQGPIGP 671
Score = 33.5 bits (75), Expect = 0.30
Identities = 58/253 (22%), Positives = 81/253 (32%), Gaps = 14/253 (5%)
Query: 6 GRPGPETDLLAVAEHQALVFGGGPGRTSSEPPAGLRVSGEEETENVGGANRHPRTSPKTS 65
G PG + D + E G G P GL+ G + G + P P+
Sbjct: 1081 GSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQ--GPVGAPGIAGGDGEP--GPRGQ 1136
Query: 66 SCGVVHRPEREALENEPGPQGTLSGAGSRRGAPGAEHEPSLSSRHKNPAPPEGKPS---S 122
G+ + E PGP G + G G PG + E P PP + +
Sbjct: 1137 Q-GMFGQKGDEGARGFPGPPGPI-GLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPN 1194
Query: 123 GRDCRRGGPGGGMDVEQQEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSS 182
G D +G PG V E+ EA G + + R G + G AG
Sbjct: 1195 GADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPP 1254
Query: 183 GSAESGAGGGRRATISSPLELEGTVSRHGDLTHFVANNLQLKIRLSGAP----PPPPSAP 238
G+ G + P+ G G+ + + G P PP PS
Sbjct: 1255 GAKGPPGDDGPKGN-PGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGE 1313
Query: 239 ARPCPAPAPTPTP 251
A P P P
Sbjct: 1314 AGPPGPPGKRGPP 1326
Score = 32.7 bits (73), Expect = 0.51
Identities = 37/140 (26%), Positives = 43/140 (30%), Gaps = 19/140 (13%)
Query: 27 GGPGRTSSEPPAGLRVSGEEETENVGGANRHPRTSPKTSSCGVVHRPEREALENEPGPQG 86
G PG P G R GE+ GA P G P +PGP G
Sbjct: 1225 GPPGEAGVGGPKGER--GEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPG 1282
Query: 87 TLSGAGS--------RRGAPGAEHEPSLSSRHKNPAPPEGKPSSGRDCRRGGPGGGMDVE 138
AG G PG P S P PP RG PG
Sbjct: 1283 EPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGK---------RGPPGAAGAEG 1333
Query: 139 QQEEEDNDEEAAAGSRAGRS 158
+Q E+ EA A G++
Sbjct: 1334 RQGEKGAKGEAGAEGPPGKT 1353
Score = 29.3 bits (64), Expect = 5.7
Identities = 40/155 (25%), Positives = 55/155 (35%), Gaps = 23/155 (14%)
Query: 2 ESSRGRPGPETD---LLAVAEHQALVFGGGPGRTSSEPPAGLR-------VSGEEETENV 51
E +GR GP D E L G PG + P G +GE+ V
Sbjct: 774 EGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGV 833
Query: 52 GG-----ANRHPRTSPKTS--SCGVVHRPEREAL---ENEPGPQGTLSGAGSRR--GAPG 99
G R P T P+ S + G +P + + PGP G G + G PG
Sbjct: 834 AGKPGPRGQRGP-TGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPG 892
Query: 100 AEHEPSLSSRHKNPAPPEGKPSSGRDCRRGGPGGG 134
+ P + P P + +G + G PG G
Sbjct: 893 PKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPG 927
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 48.5 bits (114), Expect = 9e-06
Identities = 50/188 (26%), Positives = 66/188 (35%), Gaps = 22/188 (11%)
Query: 27 GGPGRTSSEPPAGLRVSGEEETENVG--GANRHPRTSPKTSSCGVVHRPEREALENEPGP 84
G G+T P G+ V + T G G HP G+ +E + +PGP
Sbjct: 955 GFQGKTGPPGPGGV-VGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGP 1013
Query: 85 QGT--------LSGAGSRRGAPGAEHEPSLSSRH--KNPAPPEGKPSSGRDCRRGGPGG- 133
QG L G RG PGA+ P L + P P G P GP G
Sbjct: 1014 QGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGL 1073
Query: 134 -GMDVEQQEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSSGSAESGAGGG 192
G Q E+ A G + + + R DG+ G G +G A S G
Sbjct: 1074 PGRPGPQGPPGPAGEKGAPGEKGPQGPAGR-------DGVQGPVGLPGPAGPAGSPGEDG 1126
Query: 193 RRATISSP 200
+ I P
Sbjct: 1127 DKGEIGEP 1134
Score = 40.4 bits (93), Expect = 0.002
Identities = 58/227 (25%), Positives = 72/227 (31%), Gaps = 40/227 (17%)
Query: 27 GGPGRTSSEPPAGLRV-SGEEETENVGGANRHPRTSPKTSSCGVVHRPEREALENEPGPQ 85
G PG+ AG GE+ + GA P + G +P E L PGP
Sbjct: 1357 GPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPV 1416
Query: 86 GT--LSGAGSRRGAPGAEHEPSLSSRHKNPAPPEGKPSSGRDCRRGGPGGGMDVEQQEEE 143
G L GA + G PG P L +P K G G PG EQ E+
Sbjct: 1417 GEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPG-----EQGEKG 1471
Query: 144 DNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSSG-SAESGAGGGRRATISSPLE 202
D GS + + G + G G G G G + +T
Sbjct: 1472 DRGLPGTQGSPGAKG-------DGGIPGPAGPLGPPGPPGLPGPQGPKGNKGST------ 1518
Query: 203 LEGTVSRHGDLTHFVANNLQLKIRLSGAPPPPPSAPARPCPAPAPTP 249
G + GD SG P PP S P P P P
Sbjct: 1519 --GPAGQKGD---------------SGLPGPPGS-PGPPGEVIQPLP 1547
Score = 35.4 bits (80), Expect = 0.079
Identities = 56/226 (24%), Positives = 76/226 (33%), Gaps = 38/226 (16%)
Query: 52 GGANRHPRTSPKTSSCGVVHRPEREALENEPGPQ------GTLSGAGSRRGAPGAEHEPS 105
G ++ P S + + + + R AL PGP G + G GS GA G +P
Sbjct: 501 GDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGS-SGAKGESGDPG 559
Query: 106 LSSRH--KNPAPPEGKPSSGRDCRRGGPGG-GMDVEQQEEEDNDEEAAAG-----SRAGR 157
+ P P GKP G+ R G GG GM E + D + G G
Sbjct: 560 PQGPRGVQGPPGPTGKP--GKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGE 617
Query: 158 SFSSRLQDSRSLDGLSEACGGAGSSG-SAESGAGG--GRRATISSPLE-----LEGTVSR 209
DG+ G G G E+G G G R T +P + ++G
Sbjct: 618 RGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGP 677
Query: 210 HGDLTHFVANNLQLKIRLSGAPPPPPSAPARPCPAPAPTPTPAIPP 255
G++ P PP P P P P I P
Sbjct: 678 KGNMG-------------PQGEPGPPGQQGNPGPQGLPGPQGPIGP 710
Score = 33.5 bits (75), Expect = 0.30
Identities = 58/253 (22%), Positives = 81/253 (32%), Gaps = 14/253 (5%)
Query: 6 GRPGPETDLLAVAEHQALVFGGGPGRTSSEPPAGLRVSGEEETENVGGANRHPRTSPKTS 65
G PG + D + E G G P GL+ G + G + P P+
Sbjct: 1120 GSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQ--GPVGAPGIAGGDGEP--GPRGQ 1175
Query: 66 SCGVVHRPEREALENEPGPQGTLSGAGSRRGAPGAEHEPSLSSRHKNPAPPEGKPS---S 122
G+ + E PGP G + G G PG + E P PP + +
Sbjct: 1176 Q-GMFGQKGDEGARGFPGPPGPI-GLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPN 1233
Query: 123 GRDCRRGGPGGGMDVEQQEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSS 182
G D +G PG V E+ EA G + + R G + G AG
Sbjct: 1234 GADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPP 1293
Query: 183 GSAESGAGGGRRATISSPLELEGTVSRHGDLTHFVANNLQLKIRLSGAP----PPPPSAP 238
G+ G + P+ G G+ + + G P PP PS
Sbjct: 1294 GAKGPPGDDGPKGN-PGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGE 1352
Query: 239 ARPCPAPAPTPTP 251
A P P P
Sbjct: 1353 AGPPGPPGKRGPP 1365
Score = 32.7 bits (73), Expect = 0.51
Identities = 37/140 (26%), Positives = 43/140 (30%), Gaps = 19/140 (13%)
Query: 27 GGPGRTSSEPPAGLRVSGEEETENVGGANRHPRTSPKTSSCGVVHRPEREALENEPGPQG 86
G PG P G R GE+ GA P G P +PGP G
Sbjct: 1264 GPPGEAGVGGPKGER--GEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPG 1321
Query: 87 TLSGAGS--------RRGAPGAEHEPSLSSRHKNPAPPEGKPSSGRDCRRGGPGGGMDVE 138
AG G PG P S P PP RG PG
Sbjct: 1322 EPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGK---------RGPPGAAGAEG 1372
Query: 139 QQEEEDNDEEAAAGSRAGRS 158
+Q E+ EA A G++
Sbjct: 1373 RQGEKGAKGEAGAEGPPGKT 1392
Score = 29.3 bits (64), Expect = 5.7
Identities = 40/155 (25%), Positives = 55/155 (35%), Gaps = 23/155 (14%)
Query: 2 ESSRGRPGPETD---LLAVAEHQALVFGGGPGRTSSEPPAGLR-------VSGEEETENV 51
E +GR GP D E L G PG + P G +GE+ V
Sbjct: 813 EGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGV 872
Query: 52 GG-----ANRHPRTSPKTS--SCGVVHRPEREAL---ENEPGPQGTLSGAGSRR--GAPG 99
G R P T P+ S + G +P + + PGP G G + G PG
Sbjct: 873 AGKPGPRGQRGP-TGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPG 931
Query: 100 AEHEPSLSSRHKNPAPPEGKPSSGRDCRRGGPGGG 134
+ P + P P + +G + G PG G
Sbjct: 932 PKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPG 966
>gi|60097902 filaggrin [Homo sapiens]
Length = 4061
Score = 45.4 bits (106), Expect = 8e-05
Identities = 52/198 (26%), Positives = 76/198 (38%), Gaps = 23/198 (11%)
Query: 3 SSRGRPGPETDLLAVAEHQALVFGGGPGRTSSEPPAGLRVSGEEETENVGGANRHPRTSP 62
S+ G+ GP HQ G GR+ +VS E++E+ H R P
Sbjct: 3680 SAHGQAGPHQQ-----SHQESTRGRSAGRSGRSGSFLYQVSTHEQSESA-----HGRAGP 3729
Query: 63 KTSSC-GVVHRPEREALENEPGPQG--TLSG-AGSRRGA-PGAEHEPSLSSRHKNPAPPE 117
T G H R++ + +G T+ G GSRRG G+ HE S+ + +
Sbjct: 3730 STGGRQGSRHEQARDSSRHSASQEGQDTIRGHPGSRRGGRQGSYHEQSVDRSGHSGSHHS 3789
Query: 118 GKPSSGRDCRRGGPGGGMDVEQQ---EEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLSE 174
S GR G G ++ EE+ D +GSR + + S G E
Sbjct: 3790 HTTSQGRSDASHGQSGSRSASRETRNEEQSGDGSRHSGSRHHEASTQADSSRHSQSGQGE 3849
Query: 175 ACGG-----AGSSGSAES 187
+ G GSS S +S
Sbjct: 3850 SAGSRRSRRQGSSVSQDS 3867
Score = 44.3 bits (103), Expect = 2e-04
Identities = 51/208 (24%), Positives = 79/208 (37%), Gaps = 21/208 (10%)
Query: 3 SSRGRPGPETDLLAVAEHQALVFGGGPGRTSSEPPAGLRVSGEEETENVGGANRHPRTSP 62
S G+ GP HQ GR+ +VS E++E+ H RT
Sbjct: 3356 SGHGQAGPHQQ-----SHQESARDRSGGRSGRSGSFLYQVSTHEQSESA-----HGRTRT 3405
Query: 63 KTSSC-GVVHRPEREALENEPGPQG--TLSG--AGSRRGAPGAEHEPSLSSRHKNPAPPE 117
T G H R++ + +G T+ G SRRG G+ +E S+ + +
Sbjct: 3406 STGRRQGSHHEQARDSSRHSASQEGQDTIRGHPGSSRRGRQGSHYEQSVDRSGHSGSHHS 3465
Query: 118 GKPSSGRDCRRGGPGGGMDVEQQEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACG 177
S GR G G +Q NDE++ GSR S+S + S D +
Sbjct: 3466 HTTSQGRSDASRGQSGSRSASRQTR--NDEQSGDGSR--HSWSHHHEASTQADSSRHSQS 3521
Query: 178 GAGSSGSAESGAGGGRRATISSPLELEG 205
G G S + G +++S + +G
Sbjct: 3522 GQGQSAGPRTSRNQG--SSVSQDSDSQG 3547
Score = 38.9 bits (89), Expect = 0.007
Identities = 50/202 (24%), Positives = 75/202 (37%), Gaps = 23/202 (11%)
Query: 3 SSRGRPGPETDLLAVAEHQALVFGGGPGRTSSEPPAGLRVSGEEETENVGGANRHPRTSP 62
S G+ G L HQ G R+ + +VS E+ ++ H RT
Sbjct: 438 SGHGKAG-----LRQQSHQESTRGRSGERSGRSGSSLYQVSTHEQPDSA-----HGRTGT 487
Query: 63 KTSSC-GVVHRPEREALENEPGPQG--TLSG--AGSRRGAPGAEHEPSLSSRHKNPAPPE 117
T G H R++ + +G T+ G SR G G+ HE S++ + +
Sbjct: 488 STGGRQGSHHEQARDSSRHSASQEGQDTIRGHPGSSRGGRQGSHHEQSVNRSGHSGSHHS 547
Query: 118 GKPSSGRDCRRGGPGGGMDVEQQ---EEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLSE 174
S GR G G +Q EE+ D +GSR + S S G +
Sbjct: 548 HTTSQGRSDASHGQSGSRSASRQTRNEEQSGDGTRHSGSRHHEASSQADSSRHSQVGQGQ 607
Query: 175 ACG-----GAGSSGSAESGAGG 191
+ G GSS S +S + G
Sbjct: 608 SSGPRTSRNQGSSVSQDSDSQG 629
Score = 37.7 bits (86), Expect = 0.016
Identities = 52/214 (24%), Positives = 76/214 (35%), Gaps = 13/214 (6%)
Query: 3 SSRGRPGPETDLLAVAEHQALVFGGGPGRTSSEPPAGLRVSGEEETENVGGANRHPRTSP 62
S G+ GP HQ GR+ +VS E++E+ G R T
Sbjct: 1087 SGHGQDGPHQQ-----SHQESARDWSGGRSGRSGSFIYQVSTHEQSESAHGRTR-TSTGR 1140
Query: 63 KTSSCGVVHRPEREALENEPGPQGTLSGAGSRRGA-PGAEHEPSLSSRHKNPAPPEGKPS 121
+ S R ++ G + GSRRG G+ HE S+ + + S
Sbjct: 1141 RQGSHHEQARDSSRHSASQEGQDTIRAHPGSRRGGRQGSHHEQSVDRSGHSGSHHSHTTS 1200
Query: 122 SGRDCRRGGPGGGMDVEQQEEED---NDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGG 178
GR G G +Q +D D +GSR + S S G ++ G
Sbjct: 1201 QGRSDASHGQSGSRSASRQTRKDKQSGDGSRHSGSRHHEAASWADSSRHSQVGQEQSSGS 1260
Query: 179 AGS--SGSAESGAGGGRRATISSPLELEGTVSRH 210
S GS+ S R + S L G+ SR+
Sbjct: 1261 RTSRHQGSSVSQDSDSERHSDDSE-RLSGSASRN 1293
Score = 37.7 bits (86), Expect = 0.016
Identities = 48/170 (28%), Positives = 64/170 (37%), Gaps = 30/170 (17%)
Query: 31 RTSSEPPAGLRVSGEEETENVGGANRHPRTSPKTSSCGVVHRPEREA------LENEPGP 84
R S R S +E++ + +RHPR S G H +R E G
Sbjct: 3230 RWSGSASRNHRGSVQEQSRH---GSRHPR-SHHEDRAGHGHSADRSRQSGTRHAETSSGG 3285
Query: 85 QGTLSGAGSRRGAPGAEHEPSLSSRHKNPAP-------PEGKPSSG-RDCRRGGPGGGM- 135
Q S R +PG H SRH+ A P G+ SS RD R G G
Sbjct: 3286 QAA-SSHEQARSSPGERH----GSRHQQSADSSRHSGIPRGQASSAVRDSRHWGSSGSQA 3340
Query: 136 -DVEQQEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSSGS 184
D E EE + + + +AG S + +R G G +G SGS
Sbjct: 3341 SDSEGHSEESDTQSVSGHGQAGPHQQSHQESARDRSG-----GRSGRSGS 3385
Score = 33.5 bits (75), Expect = 0.30
Identities = 40/154 (25%), Positives = 57/154 (37%), Gaps = 11/154 (7%)
Query: 57 HPRTSPKTS-SCGVVHRPEREALENEPGPQG--TLSG--AGSRRGAPGAEHEPSLSSRHK 111
H T P T G H R+ + G T+ G SRRG G+ HE S+
Sbjct: 807 HGWTGPSTGVRQGSHHEQARDNSRHSASQDGQDTIRGHPGSSRRGRQGSHHEQSVDRSGH 866
Query: 112 NPAPPEGKPSSGRDCRRGGPGGGMDVEQQEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDG 171
+ + S GR G G + N+E++ GSR S +
Sbjct: 867 SGSHHSHTTSQGRSDASRGQSGSRSASRTTR--NEEQSRDGSRHSGSRHHEASSHADISR 924
Query: 172 LSEACGGAGSSGSAESGAGGGRRATISSPLELEG 205
S+A G S GS S G +++S + EG
Sbjct: 925 HSQA-GQGQSEGSRTSRRQG---SSVSQDSDSEG 954
Score = 33.5 bits (75), Expect = 0.30
Identities = 39/165 (23%), Positives = 60/165 (36%), Gaps = 20/165 (12%)
Query: 31 RTSSEPPAGLRVSGEEETENVGGANRHPRTSPKTSSCGVVHRPEREALENEPGPQGTLSG 90
R S R S +E++ + +RHPR S G H + P + + G
Sbjct: 961 RWSGSASRNHRGSAQEQSRH---GSRHPR-SHHEDRAGHGHSADSSRQSGTPHAETSSGG 1016
Query: 91 AGSR-----RGAPG----AEHEPSLSSRHKNPAPPEGKPSSGRDCRRGGPGGGM--DVEQ 139
+ R +PG + H+ S S + P S+ RD G G D E
Sbjct: 1017 QAASSHEQARSSPGERHGSRHQQSADSSRHSGIPRRQASSAVRDSGHWGSSGSQASDSEG 1076
Query: 140 QEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSSGS 184
EE + + + + G S + +R G G +G SGS
Sbjct: 1077 HSEESDTQSVSGHGQDGPHQQSHQESARDWSG-----GRSGRSGS 1116
Score = 33.1 bits (74), Expect = 0.39
Identities = 52/226 (23%), Positives = 81/226 (35%), Gaps = 32/226 (14%)
Query: 2 ESSRGRPGPETDLLAVAEHQALVFGGGPGRTSSEPPAGLRVSGEE--ETENVGGANRHPR 59
++S G+ GP + A Q R + G R SG E G++RH +
Sbjct: 1529 DASHGQSGPRS-----ASRQT--------RNEEQSGDGSRHSGSRHHEPSTRAGSSRHSQ 1575
Query: 60 TSPKTSSCGVVHRPEREALENEPGPQGTLSGAGSRRGAPGAEHEPSL--SSRH--KNP-A 114
S+ R + ++ + +G + R + H S SRH +NP +
Sbjct: 1576 VGQGESAGSKTSRRQGSSVSQDRDSEGHSEDSERRSESASRNHYGSAREQSRHGSRNPRS 1635
Query: 115 PPEGKPSSGRDC---RRGGP------GGGMDVEQQEEEDNDEEAAAGSRAGRSFSSRLQD 165
E + S G R+ G GG QE+ + GSR +S S
Sbjct: 1636 HQEDRASHGHSAESSRQSGTRHAETSSGGQAASSQEQARSSPGERHGSRHQQSADSSTDS 1695
Query: 166 SRSLDGLSEACGGAGSSGSAESGAGGGRRATISSPLELEGTVSRHG 211
S G +G+ GS+ S A + S + +VS HG
Sbjct: 1696 GTGRRQDSSVVGDSGNRGSSGSQASDSEGHSEESDTQ---SVSAHG 1738
Score = 32.7 bits (73), Expect = 0.51
Identities = 56/206 (27%), Positives = 84/206 (40%), Gaps = 26/206 (12%)
Query: 27 GGPGRTSSEPPAGL-RVSGEEETENVGGANRHPRTSPKTSSC-GVVHRPEREALENEPGP 84
G G TS + L +VS E++E+ H T P T G H +++ +
Sbjct: 3050 GRSGETSGHSGSFLYQVSTHEQSES-----SHGWTGPSTRGRQGSRHEQAQDSSRHSASQ 3104
Query: 85 QG--TLSG--AGSRRGAPGAEHEPSLSSRHKNPAPPEGKPSSGR-DCRRG--GPGGGMDV 137
G T+ G SR G G HE S+ S + + S GR D RG G
Sbjct: 3105 YGQDTIRGHPGSSRGGRQGYHHEHSVDSSGHSGSHHSHTTSQGRSDASRGQSGSRSASRT 3164
Query: 138 EQQEEEDNDEEAAAGSR--AGRSFSSRLQDSRSLDGLSEACGGA---GSSGSAESGAGG- 191
+ EE+ D + SR + + + S+++ G SE + GSS S +S + G
Sbjct: 3165 TRNEEQSGDSSRHSVSRHHEASTHADISRHSQAVQGQSEGSRRSRRQGSSVSQDSDSEGH 3224
Query: 192 ---GRRATISSPLELEGTV---SRHG 211
R + S+ G+V SRHG
Sbjct: 3225 SEDSERWSGSASRNHRGSVQEQSRHG 3250
Score = 32.0 bits (71), Expect = 0.87
Identities = 51/193 (26%), Positives = 69/193 (35%), Gaps = 39/193 (20%)
Query: 33 SSEPPAGLRVSGEEETENVGGANRHPRTSPKTSSCGVVHRPEREALENEPGPQGTLSGAG 92
S AGLR +E+ R R+ +P+ + G GT +G
Sbjct: 438 SGHGKAGLRQQSHQESTRGRSGERSGRSGSSLYQVSTHEQPD-----SAHGRTGTSTG-- 490
Query: 93 SRRGAPGAEHEPSL-SSRHKNPAPPEGKPSSGRDCRRGGPG---GGMDVEQQEEEDNDEE 148
G G+ HE + SSRH G+D RG PG GG E+ N
Sbjct: 491 ---GRQGSHHEQARDSSRHS-------ASQEGQDTIRGHPGSSRGGRQGSHHEQSVN--- 537
Query: 149 AAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSSGSA------ESGAGGGRRATISSPLE 202
R+G S S + G S+A G S SA E +G G R + S E
Sbjct: 538 -----RSGHSGSH--HSHTTSQGRSDASHGQSGSRSASRQTRNEEQSGDGTRHSGSRHHE 590
Query: 203 L--EGTVSRHGDL 213
+ SRH +
Sbjct: 591 ASSQADSSRHSQV 603
Score = 30.8 bits (68), Expect = 1.9
Identities = 32/127 (25%), Positives = 47/127 (37%), Gaps = 23/127 (18%)
Query: 93 SRRGAPGAEHEPSL-SSRHKNPAPPEGKPSSGRDCRRGGPGGGMDVEQQEEEDNDEEAAA 151
S RG G+ HE + SSRH G+D RG PG Q ++ +++
Sbjct: 2758 STRGRQGSRHEQAQDSSRHS-------ASQDGQDTIRGHPGSSRGGRQGYHHEHSVDSSG 2810
Query: 152 GSRAGRSFSSRLQDSRSLDGLSEACGGAGSSGSA--------ESGAGGGRRATISSPLEL 203
S + S ++ G S+A G S SA +SG G +
Sbjct: 2811 HSGSHHSHTTS-------QGRSDASRGQSGSRSASRTTRNEEQSGDGSRHSGSRHHEAST 2863
Query: 204 EGTVSRH 210
+SRH
Sbjct: 2864 HADISRH 2870
Score = 30.4 bits (67), Expect = 2.5
Identities = 44/192 (22%), Positives = 67/192 (34%), Gaps = 21/192 (10%)
Query: 39 GLRVSGEE--ETENVGGANRHPRTSPKTSSCGVVHRPEREALENEPGPQG------TLSG 90
G R SG E + ++RH SS RP ++ + +G SG
Sbjct: 2202 GSRHSGSHHHEASSWADSSRHSLVGQGQSSGPRTSRPRGSSVSQDSDSEGHSEDSERRSG 2261
Query: 91 AGSRRGAPGAEHEPSLSSRHKNPAPPE--GKPSSGRDCRRGGPGGGMDVEQQEEEDNDEE 148
+ SR A+ + SRH + G S R+ G + + + E+
Sbjct: 2262 SASRNHHGSAQEQSRDGSRHPRSHHEDRAGHGHSAESSRQSGTHHAENSSGGQAASSHEQ 2321
Query: 149 A--AAGSRAGRSFSSRLQDSRSLDGLSEA--------CGGAGSSGSAESGAGGGRRATIS 198
A +AG R G S + DS G+ G GSSGS S + G + +
Sbjct: 2322 ARSSAGERHG-SHHQQSADSSRHSGIGHGQASSAVRDSGHRGSSGSQASDSEGHSEDSDT 2380
Query: 199 SPLELEGTVSRH 210
+ G H
Sbjct: 2381 QSVSAHGQAGPH 2392
Score = 30.0 bits (66), Expect = 3.3
Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 2/116 (1%)
Query: 57 HPRTSPKTSSCGVVHRPEREALENEPGPQGTLSGAGSRRGAPGAEHEPSLSSRHKNPAPP 116
H ++ + G H + + + S AG R G+ + + + SSRH
Sbjct: 670 HGHSADSSRKSGTRHTQNSSSGQAASSHEQARSSAGERHGSRH-QLQSADSSRHSGTGHG 728
Query: 117 EGKPSSGRDCRRGGPGGGMDVEQQEEEDNDEEAAAG-SRAGRSFSSRLQDSRSLDG 171
+ + RG G + ED+D ++ +G +AG S + +R G
Sbjct: 729 QASSAVRDSGHRGSSGSQATDSEGHSEDSDTQSVSGHGQAGHHQQSHQESARDRSG 784
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 45.1 bits (105), Expect = 1e-04
Identities = 72/291 (24%), Positives = 93/291 (31%), Gaps = 47/291 (16%)
Query: 6 GRPGPETDLLAVAEHQALVFGGGPGRTSSEPPAGLR-VSGEEETENVGGANRHPRTSPKT 64
G PGP+ +A + +V G PG+ GL SGE + GA+
Sbjct: 947 GTPGPQ----GIAGQRGVV--GLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPM 1000
Query: 65 SSCGVVHRPEREALENEPGPQGTLS-----GAGSRRGAPGAEHEPSLSSRHKNPAP--PE 117
G+ P E PG +G+ GA RG G P P P P
Sbjct: 1001 GPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPA 1060
Query: 118 GKPSSGRDCRRGGPGG-----------GMDVEQQEEEDNDEEAAAGSRAGRSFSSRLQD- 165
GK + GP G G + ++ + E+ G + R FS LQ
Sbjct: 1061 GKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSG-LQGP 1119
Query: 166 -----SRSLDGLSEACGGAGSSGSAESGAGGGRRAT--ISSPLELEGTVSRHGDLTHFVA 218
S G S A G AG G S G+ + P+ G R GD
Sbjct: 1120 PGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPV-- 1177
Query: 219 NNLQLKIRLSGAPPPPPSAPARPCPAPAPTPTPAIPPIDPEVLRDLERLSR 269
PP PP P P P A +P E D R R
Sbjct: 1178 -----------GPPGPPGPPGPPGPPSAGFDFSFLPQPPQEKAHDGGRYYR 1217
Score = 41.6 bits (96), Expect = 0.001
Identities = 71/255 (27%), Positives = 82/255 (32%), Gaps = 53/255 (20%)
Query: 27 GGPGRTSSE-PPAGLRVSGEEETENVGGANRHPRTSPKTSSCGVVHRPEREALEN----- 80
G PG PP G + GA P GVV P +
Sbjct: 917 GRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLP 976
Query: 81 ----EPGPQGTLSGAGSRRGAPGAEHEPSLSSRHKNPAPPEGKPSSGRDCRRGGPGG-GM 135
EPG QG SGA RG PG P L A P G+ SGR+ G G G
Sbjct: 977 GPSGEPGKQGP-SGASGERGPPGPMGPPGL-------AGPPGE--SGREGAPGAEGSPGR 1026
Query: 136 DVEQQEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSSGS-AESGAGG--- 191
D + D E AG + G G AG SG E+G G
Sbjct: 1027 DGSPGAKGDRGETGPAGP----------PGAPGAPGAPGPVGPAGKSGDRGETGPAGPAG 1076
Query: 192 -----GRR--ATISSPLELEGTVSRHGD---LTHFVANNLQLKIRLSGAPPPPPSAPARP 241
G R A P +G GD H + LQ PP PP +P
Sbjct: 1077 PVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQ-------GPPGPPGSPGEQ 1129
Query: 242 CPAPAPTPT-PAIPP 255
P+ A P P PP
Sbjct: 1130 GPSGASGPAGPRGPP 1144
Score = 40.8 bits (94), Expect = 0.002
Identities = 62/253 (24%), Positives = 76/253 (30%), Gaps = 51/253 (20%)
Query: 5 RGRPGPETDLLAVAEHQALVFGGGPGRTSSEPPAGLRVSGEEETENVGGANRHPRTSPKT 64
RG PGP G PG + P G GE G P K
Sbjct: 187 RGLPGPP---------------GAPGPQGFQGPPG--EPGEPGASGPMGPRGPPGPPGKN 229
Query: 65 SSCGVVHRPEREALENEPGPQGTLSGAGSRRGAPGAEHEPSLS-----SRHKNPAPPEGK 119
G +P R PGPQG G G PG + S PA P+G+
Sbjct: 230 GDDGEAGKPGRPGERGPPGPQGA-RGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGE 288
Query: 120 PSSGRDCRRGGPGGGMDVEQQEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGA 179
P S + G PG G R GR + +R DG + A G
Sbjct: 289 PGSPGE--NGAPG-----------QMGPRGLPGER-GRPGAPGPAGARGNDGATGAAGPP 334
Query: 180 GSSGSAESGAGGGRRATISSPLELEGTVSRHGDLTHFVANNLQLKIRLSGAP-PPPPSAP 238
G +G A P G V G+ + + G P PP P+
Sbjct: 335 GPTGPA-------------GPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGA 381
Query: 239 ARPCPAPAPTPTP 251
A P P P
Sbjct: 382 AGPAGNPGADGQP 394
Score = 37.7 bits (86), Expect = 0.016
Identities = 65/284 (22%), Positives = 86/284 (30%), Gaps = 51/284 (17%)
Query: 6 GRPGPETDLLAVAEHQALVFGGGPGRTSSEPPAGLR-------------VSGEEETENVG 52
G PG + A + A G PG + P+G + G ++
Sbjct: 386 GNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDT 445
Query: 53 GANRHPRTSPKTSSCGVVHRPEREALENEPGPQGTLSGAGSRRGAPGAEHEPSLSS---- 108
GA P G + EPGP G L G RG PG+ P
Sbjct: 446 GAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTG-LPGPPGERGGPGSRGFPGADGVAGP 504
Query: 109 -------RHKNPAPPEGKP-SSGRDCRRGGPGGGMDVEQQEEEDNDEEAAAGSRAGRSFS 160
PA P+G P +GR G PG D + AG+
Sbjct: 505 KGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGR 564
Query: 161 SRLQDSRSLDGLSEACGGAGSSGSAESGAGGGRRATISSPLELEGTVSRHGDLTHFVANN 220
G + G G G+A G R + P G + G+
Sbjct: 565 PGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERG-VPGPPGAVGPAGKDGE-------- 615
Query: 221 LQLKIRLSGAP-PPPPSAPA----RPCPAPAP----TPTPAIPP 255
+GA PP P+ PA PA +P P PA PP
Sbjct: 616 -------AGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPP 652
Score = 37.0 bits (84), Expect = 0.027
Identities = 37/135 (27%), Positives = 47/135 (34%), Gaps = 17/135 (12%)
Query: 1 MESSRGRPGPETDLLAVAEHQALVFGGGPGRTSSEPPAGLRVSGEEETENVGGANRHPRT 60
+ RGRPG A A G PG T P G + VG
Sbjct: 306 LPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGA-------VGAKGEAGPQ 358
Query: 61 SPKTSSCGVVHRPEREALENEPGPQGTLSGAGSRRGAPGAEHEPSLSSRHKNP--APPEG 118
P+ S + + EPGP G +GA G PGA+ +P + P A G
Sbjct: 359 GPRGSE-------GPQGVRGEPGPPGP-AGAAGPAGNPGADGQPGAKGANGAPGIAGAPG 410
Query: 119 KPSSGRDCRRGGPGG 133
P + GPGG
Sbjct: 411 FPGARGPSGPQGPGG 425
Score = 35.8 bits (81), Expect = 0.061
Identities = 71/298 (23%), Positives = 91/298 (30%), Gaps = 34/298 (11%)
Query: 27 GGPGRTS-SEPPAGLRVSGEEETENVGGANRHPRTSPKTSSCGVVHRPEREALENEPGPQ 85
G PG + PP + G + G+ P + + G V P PGP
Sbjct: 839 GPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPP 898
Query: 86 GTLSGAGSR--RGAPGAEHEPSLSSRHKNPAPPEGKPSSGRDCRRGGPGGGMDVEQQEEE 143
G G + RG G P P P K S G D G PG
Sbjct: 899 GPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPG----------- 947
Query: 144 DNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSSGSAESGAGGGRRATISSPLEL 203
+ AG R + + R GL G G G SGA G R P+
Sbjct: 948 TPGPQGIAGQRGVVGLPGQ-RGERGFPGLPGPSGEPGKQG--PSGASGERGP--PGPMGP 1002
Query: 204 EGTVSRHGDLTHFVANNLQLKIRLSGAPPPP----PSAPARPCPAPAPTPTPAIPPIDPE 259
G G+ A + G+P + PA P AP P P+ P
Sbjct: 1003 PGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPG--PVGP- 1059
Query: 260 VLRDLERLSRELGGRVDRLLRGLGGAVQELTALSVGCIQTYRDAVDSLGEAVDMSIKG 317
+ + G R + G G V + A Q R GE D IKG
Sbjct: 1060 --------AGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKG 1109
Score = 34.3 bits (77), Expect = 0.18
Identities = 33/128 (25%), Positives = 42/128 (32%), Gaps = 18/128 (14%)
Query: 5 RGRPGPETDLLAVAEHQALVFGGGPGRTSSEPPAGLRVSGEEETENVGGANRHPRTSPKT 64
RG PGP G PG AGL + + G+ P KT
Sbjct: 511 RGSPGPAGPK------------GSPGEAGRPGEAGL-----PGAKGLTGSPGSPGPDGKT 553
Query: 65 SSCGVVHRPEREALENEPGPQGTLSGAGSRRGAPGAEHEPSLSSRHKNPAPPEGKPSSGR 124
G + R PG +G +G G GA EP + P PP +G+
Sbjct: 554 GPPGPAGQDGRPGPPGPPGARGQ-AGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGK 612
Query: 125 DCRRGGPG 132
D G G
Sbjct: 613 DGEAGAQG 620
Score = 28.9 bits (63), Expect = 7.4
Identities = 48/193 (24%), Positives = 64/193 (33%), Gaps = 41/193 (21%)
Query: 79 ENEPGPQGTLSGAGSRRGAPGAEHEPSLSSRHKNPAPP--EGKP-------SSGRDCRRG 129
+ E GP G G+R GAPG EP PP +G+P +G G
Sbjct: 781 KGESGPSGPAGPTGAR-GAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAG 839
Query: 130 GPGGGMDVEQQEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSSGSA---- 185
PG N A G++ R S+ + G + G G SG+A
Sbjct: 840 PPGPAGPAGPPGPIGN--VGAPGAKGARG-SAGPPGATGFPGAAGRVGPPGPSGNAGPPG 896
Query: 186 ---ESGAGGGRRATISSPLELEGTVSRHGDLTHFVANNLQLKIRLSGAPPPPPSAPARPC 242
+G GG+ P G R G++ G P PP A +
Sbjct: 897 PPGPAGKEGGK-----GPRGETGPAGRPGEV---------------GPPGPPGPAGEKGS 936
Query: 243 P-APAPTPTPAIP 254
P A P P P
Sbjct: 937 PGADGPAGAPGTP 949
>gi|6912492 mitogen-activated protein kinase 8 interacting protein 2
isoform 1 [Homo sapiens]
Length = 824
Score = 44.7 bits (104), Expect = 1e-04
Identities = 51/173 (29%), Positives = 73/173 (42%), Gaps = 28/173 (16%)
Query: 29 PGRTSSEP----PAGLRVS---GEEETENVGGANR-HPRTSPKTSSCGVVHRPEREALEN 80
P + EP P LR++ ++ N GG + P + +T+ C P EAL
Sbjct: 126 PSPSVEEPHKHRPTTLRLTTLGAQDSLNNNGGFDLVRPASWQETALCS----PAPEALRE 181
Query: 81 EPGP-QGTLSGAGSRRGA--PGAEHEPSLSSRHKNPAPPEGKPSSG-------RDCRRGG 130
PGP T +G G + PG + E + + + PAP PSS R GG
Sbjct: 182 LPGPLPATDTGPGGAQSPVRPGCDCEGNRPA--EPPAPGGTSPSSDPGIEADLRSRSSGG 239
Query: 131 PGGGMDVEQQEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSSG 183
GG ++ +D E A G+R GR SS + L + GG+ SSG
Sbjct: 240 RGGRRSSQELSSPGSDSEDAGGARLGRMISSISETELEL----SSDGGSSSSG 288
>gi|7706537 mitogen-activated protein kinase 8 interacting protein 2
isoform 2 [Homo sapiens]
Length = 797
Score = 44.7 bits (104), Expect = 1e-04
Identities = 51/173 (29%), Positives = 73/173 (42%), Gaps = 28/173 (16%)
Query: 29 PGRTSSEP----PAGLRVS---GEEETENVGGANR-HPRTSPKTSSCGVVHRPEREALEN 80
P + EP P LR++ ++ N GG + P + +T+ C P EAL
Sbjct: 99 PSPSVEEPHKHRPTTLRLTTLGAQDSLNNNGGFDLVRPASWQETALCS----PAPEALRE 154
Query: 81 EPGP-QGTLSGAGSRRGA--PGAEHEPSLSSRHKNPAPPEGKPSSG-------RDCRRGG 130
PGP T +G G + PG + E + + + PAP PSS R GG
Sbjct: 155 LPGPLPATDTGPGGAQSPVRPGCDCEGNRPA--EPPAPGGTSPSSDPGIEADLRSRSSGG 212
Query: 131 PGGGMDVEQQEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSSG 183
GG ++ +D E A G+R GR SS + L + GG+ SSG
Sbjct: 213 RGGRRSSQELSSPGSDSEDAGGARLGRMISSISETELEL----SSDGGSSSSG 261
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 43.9 bits (102), Expect = 2e-04
Identities = 62/208 (29%), Positives = 82/208 (39%), Gaps = 37/208 (17%)
Query: 3 SSRGRPGPETDLLAVAEHQALVFGGGPGRTSSE--PPAGLRVSGEEETENVGGANRHPRT 60
++R G T L +V + Q +T S PPA +R G GGA +
Sbjct: 56 ATRSPVGAGTKLNSVRQQQLQQQQQQGNKTGSRTGPPASIRGGG-------GGAEKATPL 108
Query: 61 SPKTSSCGVVHRPEREALENEPGPQGTLSGAGSRRGAPGAEHEP-----SLSSRHKNPAP 115
+PK ++ G V +P A E P TL+ G RR PG EP S+ S+ P P
Sbjct: 109 APKGAAPGAV-QPVAGA---EAAPAATLAALGGRR--PGPPEEPPRELESVPSKLGEP-P 161
Query: 116 PEGKPSSGRDCRRGGPGGGMDVEQQEEEDNDEE-------AAAGSRA---GRSFSSRLQD 165
P G+ G GG GGG E E + G RA G S
Sbjct: 162 PLGEGGGG-----GGEGGGAGGGSGEREGGAPQPPPPRGWRGKGVRAQQRGGSGGEGASP 216
Query: 166 SRSLDGLSEACG-GAGSSGSAESGAGGG 192
S S + G G+ +SGS +G G G
Sbjct: 217 SPSSSSAGKTPGTGSRNSGSGVAGGGSG 244
Score = 36.6 bits (83), Expect = 0.035
Identities = 53/201 (26%), Positives = 62/201 (30%), Gaps = 46/201 (22%)
Query: 29 PGRTSSEPPAGLRVSGEEETENVGGANRHPRTSPKTSSCGVVHRPEREALENEPGPQGTL 88
P + PP G G E GG + ERE +P P
Sbjct: 154 PSKLGEPPPLGEGGGGGGEGGGAGGGSG-----------------EREGGAPQPPPPRGW 196
Query: 89 SGAGSR---RGAPGAEH-EPSLSSRHKNPAPPEGKPSSGRDCRRGGPGGG--------MD 136
G G R RG G E PS SS P G +SG GG GGG +
Sbjct: 197 RGKGVRAQQRGGSGGEGASPSPSSSSAGKTPGTGSRNSGSGVAGGGSGGGGSYWKEGCLQ 256
Query: 137 VEQQEEEDNDEEAAAGSRA-------GRSFSSRLQDSRSLDGLSE----------ACGGA 179
E + E AAA + A G SSR + E A
Sbjct: 257 SELIQFHLKKERAAAAAAAAQMHAKNGGGSSSRSSPVSGPPAVCETLAVASASPMAAAAE 316
Query: 180 GSSGSAESGAGGGRRATISSP 200
G SAE A GG + P
Sbjct: 317 GPQQSAEGSASGGGMQAAAPP 337
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 43.9 bits (102), Expect = 2e-04
Identities = 91/340 (26%), Positives = 115/340 (33%), Gaps = 57/340 (16%)
Query: 3 SSRGRPGPETDLLAVAEHQALVFGGGPGRTSSEPPAGLRVSGEEETENVGGANRHPRT-- 60
S RGR GP V E + GG P S PA + + + P
Sbjct: 1102 SGRGRKGPLVKQTKV-EGEPQKGGGLPPAPSPTSPASPQPPPAVAAPSEKNSIPIPTIII 1160
Query: 61 -SPKTSSCGVVHRPEREALE--NEPGPQGTLSGAGSRRG-APGAEHEPSLSSRHKNPAPP 116
+P TSS G + E +P P G G GS AP P S PA P
Sbjct: 1161 KAPSTSSSGRSSQGSSTEAEPPTQPEPTGGGGGGGSSPSPAPAMSPVPPSPSPVPTPASP 1220
Query: 117 EGKPSSGRDCRRGGP-------GGGMDVEQQEE-------EDNDEEAAAGSRA-GRSFSS 161
G + + G GG E + + DE+ G G +
Sbjct: 1221 SGPATLDFTSQFGAALVGAARREGGWQNEARRRSTLFLSTDAGDEDGGDGGLGTGAAPGP 1280
Query: 162 RLQDSRSLDG----------LSEACGGAG----SSGSAESGAGGGRRATIS----SPL-- 201
RL+ S+S+D L A GAG +GS G GGG A S PL
Sbjct: 1281 RLRHSKSIDEGMFSAEPYLRLESAGSGAGYGGYGAGSRAYGGGGGSSAFTSFLPPRPLVH 1340
Query: 202 ELEGTVSRHGDLTHFVANNLQLKIRLS----GAPPPPPSAPARPCPAPAPTPTPAIPPID 257
L G + ++ S GAP PPP P+ AP PTP P
Sbjct: 1341 PLTGKALDPASPLGLALAARERALKESSEGGGAPQPPPRPPSPRYEAPPPTPHHHSPHAH 1400
Query: 258 PEVLRDL------ERLSRELGGRVDRLLRGLGGAVQELTA 291
E + L + RELG R GLG + L A
Sbjct: 1401 HEPVLRLWGASPPDPARRELGYRA-----GLGSQEKSLPA 1435
Score = 36.2 bits (82), Expect = 0.046
Identities = 48/210 (22%), Positives = 71/210 (33%), Gaps = 37/210 (17%)
Query: 71 HRPEREA--LENEPGPQGTLSGAGSRRGAPGAEHEPSLSSRHKNPAPPEGKPSSGRDCRR 128
H PE E ++P P+ L S RG G P+P G PS
Sbjct: 1022 HPPEMETGGSPDDPPPRLALGPQPSLRGWRGG-----------GPSPTPGAPSPSHHGSA 1070
Query: 129 GGPGGGMDVEQQEEEDNDEEAAAG-----SRAGRSFSSRLQDSRSLDGLSEACGGAGSSG 183
GG GG AA+ +R+GR L ++G + GG +
Sbjct: 1071 GGGGGSSQGPALRYFQLPPRAASAAMYVPARSGRGRKGPLVKQTKVEGEPQKGGGLPPAP 1130
Query: 184 SAESGAGGGRRATISSPLELEG-----------TVSRHGDLTHFVANNLQLKIRL----- 227
S S A +++P E + S G + + + +
Sbjct: 1131 SPTSPASPQPPPAVAAPSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPTQPEPTGG 1190
Query: 228 ---SGAPPPPPSAPARPCPAPAPTPTPAIP 254
G+ P P A + P+P+P PTPA P
Sbjct: 1191 GGGGGSSPSPAPAMSPVPPSPSPVPTPASP 1220
Score = 33.5 bits (75), Expect = 0.30
Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 195 ATISSPLELEGTVSRHGDLTHFVANNLQLKIRLSGAP--PPPPSAPARPCPAP-APTPTP 251
A ++P L+ T S LT + + L S AP P PP PA PAP AP P P
Sbjct: 1609 AVAAAPPTLDSTAS---SLTSYDSEVATLTQGASAAPGDPHPPGPPAPAAPAPAAPQPGP 1665
Query: 252 AIPP 255
PP
Sbjct: 1666 DPPP 1669
Score = 31.6 bits (70), Expect = 1.1
Identities = 35/116 (30%), Positives = 43/116 (37%), Gaps = 16/116 (13%)
Query: 27 GGPGRTSSEPPAGLRVSGEEETE-------NVGGANRHPRTSPKTSSCGVVHRPEREALE 79
G PG + PPA LR + + + GA P + S G + +
Sbjct: 422 GPPGTGLTVPPALLRANSDTSMALPDWMVFSAPGAASSGAPGPTSGSQG----QSQPSAP 477
Query: 80 NEPGPQGTLSGAGSRRGAPGAEHEPSLSSRHKNPAP--PEGKPSSGRDCRRGGPGG 133
GTL A S RGA PS RH A P G+PSS R G GG
Sbjct: 478 TTKLSSGTLRSASSPRGARA--RSPS-RGRHPEDAKRQPRGRPSSSGTPREGPAGG 530
Score = 30.4 bits (67), Expect = 2.5
Identities = 35/139 (25%), Positives = 51/139 (36%), Gaps = 30/139 (21%)
Query: 97 APGAEHEPSLSSRHKNPAPPEGKPSSGRDCRRGGPGGGMDVEQQEEEDNDEEAAAGSRAG 156
APG H P + AP P G D G G +V+ + D+ E
Sbjct: 1641 APGDPHPPGPPAP---AAPAPAAPQPGPDPPPGTDSGIEEVDSRSSSDHPLET------- 1690
Query: 157 RSFSSRLQDSRSLDGLSEACGGAGSSGSAESGAGGGRRATISSPLELEGTVSRHGDLTHF 216
+ + +L LS GG+ +G GGG A ++S EL T + D F
Sbjct: 1691 ------ISSASTLSSLSAEGGGS-------AGGGGGAGAGVASGPELLDTYVAYLDGQAF 1737
Query: 217 VANNLQLKIRLSGAPPPPP 235
++ + PP PP
Sbjct: 1738 GGSS-------TPGPPYPP 1749
>gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]
Length = 430
Score = 43.9 bits (102), Expect = 2e-04
Identities = 56/202 (27%), Positives = 70/202 (34%), Gaps = 23/202 (11%)
Query: 79 ENEPGPQGTLSGAGSRRGAPGAEHEPSLSSRHKNPAPPEGKPSSGRDCRRGGPGGGMDVE 138
E EPG G R PG E P+L R K PE RG +
Sbjct: 22 ELEPGCGSPGRGRRGPRPGPGDEAAPALGRRGKGSGGPEAGADGLSRGERGPRRAAVPEL 81
Query: 139 QQEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSSGS-AESGAG----GGR 193
+ + + AGS G S SL G + G S S G G G
Sbjct: 82 SAQPAGSPRASLAGSDGGGGGGSARSSGISL-GYDQRHGSPRSGRSDPRPGPGPPSVGSA 140
Query: 194 RATISSPLELEGTVSRHGDLTHFVANNLQLKIRLSGAPPPPPSAPARPCPAPAPTPTPAI 253
R+++SS L G+ + D GA P P +P PAP P P +
Sbjct: 141 RSSVSS-LGSRGSAGAYADFLP------------PGACPAPARSPEPAGPAPFPLPALPL 187
Query: 254 PP----IDPEVLRDLERLSREL 271
PP R LE L+REL
Sbjct: 188 PPGREGGPSAAERRLEALTREL 209
>gi|41152235 ubiquitin specific protease 51 [Homo sapiens]
Length = 711
Score = 43.5 bits (101), Expect = 3e-04
Identities = 44/131 (33%), Positives = 53/131 (40%), Gaps = 10/131 (7%)
Query: 129 GGPGGGMDVEQQEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSSGSAESG 188
GG GG E E+ EEAAAG A ++ S R + L+ L E A S
Sbjct: 20 GGGGGASPEEAVEKAGKMEEAAAG--ATKASSRREAEEMKLEPLQER-EPAPEENLTWSS 76
Query: 189 AGGGRRATISSPLELEGTVSRHGDLTHFVANNLQLKIRLSGAP----PPPPSAPARPCPA 244
+GG + S PL + S Q + R P PPPP PARP P
Sbjct: 77 SGGDEKVLPSIPLRCHSSSSPVCPRRK-PRPRPQPRARSRSQPGLSAPPPP--PARPPPP 133
Query: 245 PAPTPTPAIPP 255
P P P PA P
Sbjct: 134 PPPPPPPAPRP 144
>gi|24586686 voltage-dependent calcium channel gamma-8 subunit [Homo
sapiens]
Length = 425
Score = 43.5 bits (101), Expect = 3e-04
Identities = 39/141 (27%), Positives = 52/141 (36%), Gaps = 11/141 (7%)
Query: 109 RHKNPAPPEGKPSSGRDCRRGGPGG-GMDVEQQEEEDNDEEAAAGSRAGRSFSSRLQDSR 167
R + +PS RD GGPGG G + + GS A +
Sbjct: 272 RRSRSSSRSSEPSPSRDASPGGPGGPGFASTDISMYTLSRDPSKGSVAAGLAGAGGGGGG 331
Query: 168 SLDGLSEACGGAGSSGSAESGAGGGRRATISSPLELEGTVSRHGDLTHFVANNLQLKIRL 227
++ A GGAG G GAG R +S G ++ H + + +
Sbjct: 332 AVGAFGGAAGGAGGGGGGGGGAGAERDRGGAS-----GFLTLHNAFPKEAGGGVTVTV-- 384
Query: 228 SGAPPPPPSAPARPCP-APAP 247
PP P APA P P APAP
Sbjct: 385 --TGPPAPPAPAPPAPSAPAP 403
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 43.1 bits (100), Expect = 4e-04
Identities = 57/241 (23%), Positives = 91/241 (37%), Gaps = 17/241 (7%)
Query: 21 QALVFGGGPGRTSSEPPAGLRVSGEEETENVGGANRHPRTSPKTSSCGVVHRPEREALEN 80
+A FG G P +V +E +E + A+ R P T + PE+E
Sbjct: 876 EAFAFGSGLRGALRLP--SFKVKRKEPSE-ISEASEEKRPRPSTPAEEDEDDPEQEKEAG 932
Query: 81 EPGPQGTLSGA-GSRRGAPGAEHEPSLSSRHKNPAPPEGKPSSGRDCRRGGPGGGMDVEQ 139
EPG GT RG +H S + + + + SS +D + ++
Sbjct: 933 EPGRPGTKPPKRDEERGKTQGKHRKSFALDSEGEEASQ-ESSSEKD---------EEDDE 982
Query: 140 QEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSSGSAESGAGGGRRATISS 199
++EED D E A + + S +D S D S+ A S G +S + ++ SS
Sbjct: 983 EDEEDEDREEAVDTTKKETEVSDGEDEES-DSSSKCSLYADSDGENDSTSDSESSSSSSS 1041
Query: 200 PLELEGTVSRHGDLTHFVANNLQLKIRLSGAPPPPPSAPARPCPAPAPTPTPAIPPIDPE 259
+ S + +++ + P PSA P P PTP P P+
Sbjct: 1042 SSSSSSSSSSSSSSSSSESSSEDEEEE--ERPAALPSASPPPREVPVPTPAPVEVPVPER 1099
Query: 260 V 260
V
Sbjct: 1100 V 1100
Score = 37.0 bits (84), Expect = 0.027
Identities = 55/240 (22%), Positives = 81/240 (33%), Gaps = 43/240 (17%)
Query: 29 PGRTSSEPPAGLRVSGEEETENVGGANRHPRTSPKTSSCGVVHRPEREALENEPGP---- 84
P TS PP R + ++ A P G PERE + P P
Sbjct: 407 PSYTSYLPPEPSRPTDQDYRPPASEAPPPEPPEPGGGGGGGGPSPEREEVRTSPRPASPA 466
Query: 85 -QGTLSGAGSRRGAPGAEHEPSLSSRHKNPAPPEGKPSSGRDCRRGGPGGGMDVEQQEEE 143
G+ + + P A+H SL SR + + S D E++EE
Sbjct: 467 RSGSPAPETTNESVPFAQHS-SLDSRIEMLLKEQRSKFSFL---------ASDTEEEEEN 516
Query: 144 --------DNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSSGSAESGAGGGRRA 195
D E +GS G + + D G G++ + G + +
Sbjct: 517 SSMVLGARDTGSEVPSGSGHGPC-TPPPAPANFEDVAPTGSGEPGATRESPKANGQNQAS 575
Query: 196 TISSPLELEGTVSRHGDLTHFVANNLQLKIRLSGAPPPPPSAPARPCPAPAPTPTPAIPP 255
SS ++E + G G+PPP P+ P +P P P P P P PP
Sbjct: 576 PCSSGDDMEISDDDRG-----------------GSPPPAPTPPQQPPPPPPPPPPP--PP 616
>gi|154354974 phosphatase and actin regulator 2 isoform 3 [Homo
sapiens]
Length = 634
Score = 43.1 bits (100), Expect = 4e-04
Identities = 59/251 (23%), Positives = 91/251 (36%), Gaps = 47/251 (18%)
Query: 28 GPGRTSSEPPAGLRVSGEEETENVGGANRHPRTSPKTSSCGVVHRPEREALENEPGPQGT 87
G G S + P L E++ EN + P S RP+ + ++ P+G
Sbjct: 121 GNGSVSEKTPP-LEEQAEDKKENTENHSETPAAPALPPSAPPKPRPKPKPKKSPVPPKGA 179
Query: 88 LSGAGSRRGAPGAEHEPSLSSRHKNPAPPEGKPSSGRDCRRGGPGGGMDVEQQEEEDNDE 147
+GA S +G + + + K P KP+S R+ R G +
Sbjct: 180 TAGA-SHKGDEVPPIKKNTKAPGKQAPVPPPKPAS-RNTTREAAGS-----------SHS 226
Query: 148 EAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSSGSAESGAGGGRRAT--------ISS 199
+ GS+A S S+ SR AG+ G+ + G+R T +SS
Sbjct: 227 KKTTGSKASASPSTSSTSSRPKASKETVSSKAGTVGTTK-----GKRKTDKQPITSHLSS 281
Query: 200 PLELEGTVSRHGDLTHFVANNLQLKIRLSGAP-----------PPPPSAPARPCPAPAPT 248
GT G+ + +L+ + GA PPPP APA
Sbjct: 282 DTTTSGTSDLKGEPAETRVESFKLEQTVPGAEEQNTGKFKSMVPPPPVAPA--------- 332
Query: 249 PTPAIPPIDPE 259
P+P PP+ E
Sbjct: 333 PSPLAPPLPLE 343
>gi|154354968 phosphatase and actin regulator 2 isoform 1 [Homo
sapiens]
Length = 645
Score = 43.1 bits (100), Expect = 4e-04
Identities = 59/251 (23%), Positives = 91/251 (36%), Gaps = 47/251 (18%)
Query: 28 GPGRTSSEPPAGLRVSGEEETENVGGANRHPRTSPKTSSCGVVHRPEREALENEPGPQGT 87
G G S + P L E++ EN + P S RP+ + ++ P+G
Sbjct: 132 GNGSVSEKTPP-LEEQAEDKKENTENHSETPAAPALPPSAPPKPRPKPKPKKSPVPPKGA 190
Query: 88 LSGAGSRRGAPGAEHEPSLSSRHKNPAPPEGKPSSGRDCRRGGPGGGMDVEQQEEEDNDE 147
+GA S +G + + + K P KP+S R+ R G +
Sbjct: 191 TAGA-SHKGDEVPPIKKNTKAPGKQAPVPPPKPAS-RNTTREAAGS-----------SHS 237
Query: 148 EAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSSGSAESGAGGGRRAT--------ISS 199
+ GS+A S S+ SR AG+ G+ + G+R T +SS
Sbjct: 238 KKTTGSKASASPSTSSTSSRPKASKETVSSKAGTVGTTK-----GKRKTDKQPITSHLSS 292
Query: 200 PLELEGTVSRHGDLTHFVANNLQLKIRLSGAP-----------PPPPSAPARPCPAPAPT 248
GT G+ + +L+ + GA PPPP APA
Sbjct: 293 DTTTSGTSDLKGEPAETRVESFKLEQTVPGAEEQNTGKFKSMVPPPPVAPA--------- 343
Query: 249 PTPAIPPIDPE 259
P+P PP+ E
Sbjct: 344 PSPLAPPLPLE 354
>gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]
Length = 182
Score = 42.7 bits (99), Expect = 5e-04
Identities = 48/186 (25%), Positives = 69/186 (37%), Gaps = 30/186 (16%)
Query: 114 APPEGKPSSGRDCRRGGPGGGMDVEQQEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLS 173
APP ++ GGP Q + N A A + SS S
Sbjct: 3 APPATAATAAGGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSS-----------S 51
Query: 174 EACGGAGSSGSAESGAGGGRRATISSPLELEGTVSRHGDLTHFVANNLQLKIRLSGAPPP 233
+ G +GSSG SG+ G + T+ S L + R + A L+ R P
Sbjct: 52 SSSGSSGSSGGGGSGSAG--QPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLL 109
Query: 234 PPSAPARP------CPAPAPTPTPAI-----PPIDPEVLRDLERLSRELGGRVDRLLRGL 282
PP +P +P P P P+P P + PP P +D GG +R+L
Sbjct: 110 PPPSPPQPGPKGPASPRPLPSPLPLLETTPFPPDTPSRRQD------RRGGGEERVLLSA 163
Query: 283 GGAVQE 288
+V+E
Sbjct: 164 LSSVRE 169
>gi|222352122 hypothetical protein LOC284297 [Homo sapiens]
Length = 1573
Score = 42.4 bits (98), Expect = 6e-04
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 232 PPPPSAPARPCPAPAPTPTPAIPPIDPEVLRDLERLSRELGGRVDRLLRGLGGAVQELTA 291
P P +P P APTP + +P L +L R++GG++ RL + + QE A
Sbjct: 1461 PTPGQSPGPHGPCVAPTPPVRVMACEPPALVELVAAVRDVGGQLQRLTQVVEQERQERQA 1520
Query: 292 LSVGCIQTYRDA--VDSLGEAV 311
L +G Q A + LGEAV
Sbjct: 1521 LLLGLTQLVEAARGLGQLGEAV 1542
Score = 31.6 bits (70), Expect = 1.1
Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Query: 26 GGGPGRTSSEPPAGLRVSGEEETENVGGANRHPRTSPKTSSCGVVHRPEREALENEPGPQ 85
G G R+ PP LRV G+ + R P T + P A PGP
Sbjct: 963 GAGTTRSPGSPPT-LRVHGDTGSPRKPWPERRPPRPAATRTAPPTPSPGPSASPGPPGP- 1020
Query: 86 GTLSGAGSRRGAPGAEHEPSLSSRHKNPAPPEGKPSS 122
L+ SR P + +S + +PP P+S
Sbjct: 1021 -ALTSDSSRELTPHSALTSEATSDAPDTSPPTPDPAS 1056
Score = 28.9 bits (63), Expect = 7.4
Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 16/103 (15%)
Query: 165 DSRSLDGLSEACGGAGSSGSAESGAGGGRRATISSPLELEGTVSRHGDLTHFVANNLQLK 224
D+ S GL+E AG G G G + SP T+ HGD K
Sbjct: 941 DTPSGRGLAEGTPTAGKLGPT---LGAGTTRSPGSP----PTLRVHGD------TGSPRK 987
Query: 225 IRLSGAPPPPPS---APARPCPAPAPTPTPAIPPIDPEVLRDL 264
PP P + AP P P P+ +P P P + + R+L
Sbjct: 988 PWPERRPPRPAATRTAPPTPSPGPSASPGPPGPALTSDSSREL 1030
>gi|239508698 PREDICTED: similar to mucin [Homo sapiens]
Length = 265
Score = 42.4 bits (98), Expect = 6e-04
Identities = 45/179 (25%), Positives = 66/179 (36%), Gaps = 16/179 (8%)
Query: 34 SEPPAGLRVSGEEETENVGGAN--RHPRTSPKTSSCGVVHRPEREALENEPGPQGTLSGA 91
+E LR + + + GG R +SP G R E A P A
Sbjct: 27 NEKTKPLRPQQQPQCQPAGGTGQRRGSGSSPSADQQGAQDREEEAAA----APAADQQRA 82
Query: 92 GSRRGAPGAEHEPSLSSRH---KNPAPPEGKPSSGRDCRRGGPGGGMDVEQQEEEDNDEE 148
R A P+ S + P P+ +P+ G RRG G +QQ +D +EE
Sbjct: 83 QDREEEAAAAPAPTSSGHRTEKRKPQQPQCRPAGGTGQRRGS-GSSPSADQQGAQDREEE 141
Query: 149 AAAG----SRAGRSFSSRLQ--DSRSLDGLSEACGGAGSSGSAESGAGGGRRATISSPL 201
AAA SR R+ + Q R G + G S + + GA ++P+
Sbjct: 142 AAAAPAPTSRGHRTEKRKPQQPQRRPAAGTGQRRGSRSSPSADQQGAQDREEEAAAAPV 200
Score = 33.1 bits (74), Expect = 0.39
Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 15/119 (12%)
Query: 94 RRGAPGAEHEPSLSSRHKNPAPPEGKPS---SGRDCRRGGPGGGMDVEQQEEEDNDEEAA 150
R+ +E + L + P P+ +P +G +R G G +QQ +D +EEAA
Sbjct: 13 RKLRESSEGDQWLENEKTKPLRPQQQPQCQPAGGTGQRRGSGSSPSADQQGAQDREEEAA 72
Query: 151 AGSRAGRSFSSRLQDSRSLDGLSEACGGAGSSGSAE---------SGAGGGRRATISSP 200
A A + R QD + A +G +G G RR + SSP
Sbjct: 73 AAPAADQ---QRAQDREEEAAAAPAPTSSGHRTEKRKPQQPQCRPAGGTGQRRGSGSSP 128
Score = 32.3 bits (72), Expect = 0.67
Identities = 39/159 (24%), Positives = 56/159 (35%), Gaps = 37/159 (23%)
Query: 29 PGRTSSEPPAGLRVSGEEETENVGGAN--RHPRTSPKTSSCGVVHRPEREALENEPGPQG 86
P TSS R + + GG R +SP G R E A P +G
Sbjct: 93 PAPTSSGHRTEKRKPQQPQCRPAGGTGQRRGSGSSPSADQQGAQDREEEAAAAPAPTSRG 152
Query: 87 --------------TLSGAGSRRGA---PGAEHEPSLSSRHKN---PAP----------- 115
+G G RRG+ P A+ + + + P P
Sbjct: 153 HRTEKRKPQQPQRRPAAGTGQRRGSRSSPSADQQGAQDREEEAAAAPVPTSRGHRTEKRK 212
Query: 116 ---PEGKPSSGRDCRRGGPGGGMDVEQQEEEDNDEEAAA 151
P+ +P++G RRG +QQ +D +EEAAA
Sbjct: 213 RQQPQCRPAAGTGQRRGS-RSSPSADQQRAQDREEEAAA 250
>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 547
Score = 42.0 bits (97), Expect = 8e-04
Identities = 54/211 (25%), Positives = 73/211 (34%), Gaps = 36/211 (17%)
Query: 58 PRTSPKTSSCGVVHRPEREALENEP----GPQGTLSGAGSRRGAPG--------AEHEPS 105
PR SP S+ R R + EP P G + A +R PG E
Sbjct: 213 PRGSPHNSAGPRTPRLARASPPGEPFMRVAPPGLAAAAAARDSEPGPVPGAGGCGEDRLG 272
Query: 106 LSSRHKNPAPPEGKPSSGRDCRRGGPGGGMDVEQQEEEDNDEEAAAGSRAGRSFSSRLQD 165
R +N P + +SGR RRG GG++ SR S D
Sbjct: 273 SQPRPENGPPGSHRTASGRGLRRGDSEGGVN-----------RGIGPSRV----SLLAPD 317
Query: 166 SRSLDGLSEACGGAGSSGSAESGAGGGRRATISSPLELEGTVSRHGDLTHFVANNLQLKI 225
+ L+ GSA G G R L L+ +++ +
Sbjct: 318 KKRLNNAPR--------GSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAAALKAAVPRA 369
Query: 226 RLSGAPPPPPSAPA-RPCPAPAPTPTPAIPP 255
R S P PS P RP PA +P+ +PA P
Sbjct: 370 RRSANRLPRPSGPRPRPAPARSPSQSPAGTP 400
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 42.0 bits (97), Expect = 8e-04
Identities = 62/241 (25%), Positives = 81/241 (33%), Gaps = 40/241 (16%)
Query: 27 GGPGRTSSEPPAGLRVSGEEETENVGGANRHPRTSPKTSSCGVVHRPEREALENEPGPQG 86
G PG PPAG G GG R SP+ V P A + P P+G
Sbjct: 81 GAPGAAPEPPPAGRARPGG------GGPQRPGPPSPRRPL--VPAGPAPPAAKLRPPPEG 132
Query: 87 TLSGAGSRRGAPGAEHEPSLSSRHKNPAPPEGKPSSGRDCRRGGPGGGMDVEQQEEEDND 146
+ AGS P A + PA P R GPG G
Sbjct: 133 S---AGSCAPVPAAA--AVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPG 187
Query: 147 EEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSSGSAESGAGGGRRATISSPLELE-G 205
+ A G+ +++L+G + ++ A S G A + P G
Sbjct: 188 KPAGPGA------------AQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPG 235
Query: 206 TVSRHGDLTHFVANNLQLKIRLSGAPPPPPSAPARPCPAPAPTPTPAIPPIDPEVLRDLE 265
TV +Q + A PP P+AP+ P APAP A PP P L
Sbjct: 236 TV-------------IQTPPFVGAAAPPAPAAPSPPA-APAPAAPAAAPPPPPPAPATLA 281
Query: 266 R 266
R
Sbjct: 282 R 282
>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
Length = 1028
Score = 42.0 bits (97), Expect = 8e-04
Identities = 64/261 (24%), Positives = 85/261 (32%), Gaps = 44/261 (16%)
Query: 6 GRPGPETDLLAVAEHQALVFGGGPGRTSSEPPAGLRVSGEEETENVGGANRHPRTSPKTS 65
G PG DL V G G S P G + GE+ + G +
Sbjct: 284 GDPGRPGDLGPVGYQGMKGEKGSRGEKGSRGPKGYK--GEKGKRGIDGVDGVKGEMGYPG 341
Query: 66 SCGVVHRPEREALENEPGPQGTLSGAGSR--RGAPGAEHEPSLSSRHKNPAPPEGKPSSG 123
G P + ++ PGP+G G + +G PGA+ E P+ EG+P
Sbjct: 342 LPGCKGSPGFDGIQGPPGPKGDPGAFGLKGEKGEPGADGEAGRPGS-SGPSGDEGQP--- 397
Query: 124 RDCRRGGPGG-GMDVEQQEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSS 182
G PG G E +E + + A G R G R G G G
Sbjct: 398 -----GEPGPPGEKGEAGDEGNPGPDGAPGERGGPG-------ERGPRGTPGTRGPRGDP 445
Query: 183 GSAESGAGGGRRATISSPLEL--EGTVSRHGDLTHFVANNLQLKIRLSGAPPPPPSAPAR 240
G A GR + P + G + G G PP S AR
Sbjct: 446 GEAGPQGDQGREGPVGVPGDPGEAGPIGPKG---------------YRGDEGPPGSEGAR 490
Query: 241 PCPAPAPTPTPAIPPIDPEVL 261
P PA PP DP ++
Sbjct: 491 GAPGPAG------PPGDPGLM 505
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 42.0 bits (97), Expect = 8e-04
Identities = 57/295 (19%), Positives = 97/295 (32%), Gaps = 49/295 (16%)
Query: 7 RPGPETDLLAVAEHQALVFGGGPGRTSSEPPAGLR----VSGEEETENVGGANRHPRTSP 62
RPG E +LL +H+ + P ++ LR G +E +++ +P +
Sbjct: 2453 RPGEEAELLVKLDHEGVT---SPKSKKAKEALLLREDPGAGGWQEPKSLLSLGSYPPAAG 2509
Query: 63 KTSSCGVVHRPEREALENEPGPQGTLSGAGSRRGAP-------GAEHEPSLSSRHKNPAP 115
+ + L EPGP T +G+ + GAE S SS +
Sbjct: 2510 SSEPKAPWPKATDGDLAQEPGPGLTFEDSGNPKSPDKAQAEQDGAEESESSSSSSSGSSS 2569
Query: 116 PEGKPSS----------------------GRDCRRGGPGGGMDVEQQEEEDNDEEAAAGS 153
SS GR+C + +++ S
Sbjct: 2570 SSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSSSS 2629
Query: 154 RAGRSFSSRLQDSRSLDGLSEACGGAGSSGSAESGAGGGRRATISSPLELEGTVSRHGDL 213
+ S SS S S S + + SS S+ S + ++ SS + + + S +
Sbjct: 2630 SSSSSSSSSSSSSSS----SSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEA 2685
Query: 214 THFVANNLQLKIRL-------SGAPPPPPSAPARPCPAPAPTPTPAIP--PIDPE 259
+ L +G P +P + PAP P P P P+ P+
Sbjct: 2686 APAPTAGPSAQAALPTKATKQAGKARPSAHSPGKKTPAPQPQAPPPQPTQPLQPK 2740
Score = 36.6 bits (83), Expect = 0.035
Identities = 47/199 (23%), Positives = 67/199 (33%), Gaps = 55/199 (27%)
Query: 96 GAPGAEHEPSLSSRHKNPAPPEGKPSSGRDCRRG-------------------------- 129
GAPG+ H + S+R G P+ G R G
Sbjct: 171 GAPGSLHSHAPSARTPGGGHSSGAPAKGSSSRDGPAKERAGRGGEPPPLFGKKDPRARGE 230
Query: 130 ---GPGGGMDVEQQEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDG------LSEACGGAG 180
GP G +D+ Q+ + ++ A R S L +S++ + L+ GGAG
Sbjct: 231 EASGPRGVVDLTQEARAEGRQDRGPPRLAER-LSPFLAESKTKNAALQPSVLTMCNGGAG 289
Query: 181 SSGS----AESGAGGGRRATISSPLELEGTVSRHGDLTHFVANNLQLKIRLSGAPPPPPS 236
G AE+G GG + A +R + + L L G P P
Sbjct: 290 DVGLPALVAEAGRGGAKEA------------ARQDEGARLLRRTETL---LPGPRPCPSP 334
Query: 237 APARPCPAPAPTPTPAIPP 255
P P P P PA P
Sbjct: 335 LPPPPAPPKGPPAPPAATP 353
Score = 29.3 bits (64), Expect = 5.7
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 229 GAPPPPPSAPARPCPAPAPTPTPAIPPIDPEVLRDLERLSRELGGRVDRLLRGLGGAVQE 288
GA PPP APA P A AP + + ++ G V + RG GGAV +
Sbjct: 2059 GAGLPPPRAPALPSEARAPHAS--------SLTAAKRSKAKAKGKEVKKENRGKGGAVSK 2110
Query: 289 L 289
L
Sbjct: 2111 L 2111
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 42.0 bits (97), Expect = 8e-04
Identities = 68/253 (26%), Positives = 91/253 (35%), Gaps = 27/253 (10%)
Query: 27 GGPGRTSSE----PPAGLRVS--GEEETENVGGANRHPRTSPKTSSCGVVHRPEREA--- 77
GGP S + PPA S G T + GA P +P + G+ P + A
Sbjct: 1069 GGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTT 1128
Query: 78 -LENEPGPQGTLSGAGSRRGAPG--AEHEPSLSSRHKNPAPPEGKPSSGRDCRRGGPGGG 134
P P+G L+ +GAP A PS P PP+G P++ P GG
Sbjct: 1129 PAATPPSPKGGLA-TPPPKGAPTTPAATPPSPKGGLATP-PPKGAPTTPA-ATPPSPKGG 1185
Query: 135 MDVEQQEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSSGSAESGAGGGRR 194
+ + A S G + + + + + G + + GA
Sbjct: 1186 LATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPA 1245
Query: 195 ATISSPLELEGTVSRHGDLTHFVANNLQLKIRLS-----GAPPP----PPSAPARPCPAP 245
AT SP T G T A LK L+ GAP P PPS P +P
Sbjct: 1246 ATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSP 1305
Query: 246 ---APTPTPAIPP 255
APTP A PP
Sbjct: 1306 PKGAPTPPAATPP 1318
Score = 37.0 bits (84), Expect = 0.027
Identities = 58/239 (24%), Positives = 83/239 (34%), Gaps = 24/239 (10%)
Query: 27 GGPGRTSSEPPAGLRVSGEEETENVGGANRHPRTSPKTSSCGVVHRPEREA----LENEP 82
G P ++ PP+ G T GA P +P + G+ P + A P
Sbjct: 1124 GAPTTPAATPPSP---KGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPP 1180
Query: 83 GPQGTLSGAGSRRGAPG--AEHEPSLSSRHKNPAPPEGKPSSGRDCRRGGPGGGMDVEQQ 140
P+G L+ S +GAP A PS P+P +G P++ P GG+
Sbjct: 1181 SPKGGLA-TPSPKGAPTTPAATPPSPKGGLATPSP-KGAPTTPA-ATPPSPKGGLATPSP 1237
Query: 141 EEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSSGSAESGAGGGRRATISSP 200
+ A S G + + + + + G + GA T SP
Sbjct: 1238 KGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSP 1297
Query: 201 LELEGTVSRHGDLTHFVANNLQLKIRLSGAPPPPPSAPARPCPAPAPTPTPAIPPIDPE 259
T G T A PP P +P P P APTP PA+ P P+
Sbjct: 1298 KGGPATSPPKGAPTPPAAT-----------PPSPKGSPGTPPPKGAPTP-PAVTPPSPK 1344
Score = 34.7 bits (78), Expect = 0.13
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 228 SGAPPPPPSAPARPCPAPAPTPTPAIPP 255
+ PP P PA P P APTP A PP
Sbjct: 967 AATPPSPKGGPATPSPKGAPTPPAATPP 994
Score = 34.7 bits (78), Expect = 0.13
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 230 APPPP---PSAPARPCPAPAPTPTPAIPPIDPEVLRDL----ERLSRELGGRVDRLLRGL 282
AP PP P +P + PAP TP PP+ P L+D ++ ++G V + +GL
Sbjct: 1613 APTPPAVTPPSPEKGPATPAPKGTPTSPPVTPSSLKDSPTSPASVTCKMGATVPQASKGL 1672
Score = 33.9 bits (76), Expect = 0.23
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 228 SGAPPPPPSAPARPCPAPAPTPTPAIPP 255
+ PP P PA P P APTP A PP
Sbjct: 944 AATPPSPKGGPATPSPKWAPTPPAATPP 971
Score = 33.9 bits (76), Expect = 0.23
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 228 SGAPPPPPSAPARPCPAPAPTPTPAIPPIDPE 259
+ PP P PA P P APTP PA+ P P+
Sbjct: 990 AATPPSPKGGPATPSPKGAPTP-PAVTPPSPK 1020
Score = 32.3 bits (72), Expect = 0.67
Identities = 14/26 (53%), Positives = 14/26 (53%)
Query: 230 APPPPPSAPARPCPAPAPTPTPAIPP 255
A P P PA P P APTP A PP
Sbjct: 923 ATPAPKGIPASPSPKGAPTPPAATPP 948
Score = 29.6 bits (65), Expect = 4.3
Identities = 48/183 (26%), Positives = 69/183 (37%), Gaps = 23/183 (12%)
Query: 82 PGPQGTLSGAGSRRGAPGAEHEPSLSSRHKNPA--PPEGKPSSGRDCRRGGPGGGMDVEQ 139
P PQ T + + AP E S+ S PA PP K G ++
Sbjct: 712 PSPQNTCAPLATLVLAP--EIPKSVPSPSLPPAGTPPGTKKVDGISHTSALAPVASSPKE 769
Query: 140 QEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLS---EACGGAGSSGSAESGAGGGRRAT 196
ED+ A A S+ ++ L DS S G+S + GSA G ++
Sbjct: 770 CPTEDSGASATASSKGTLTY---LADSPSPLGVSVSPQTKRPPTKKGSAGPDTPIGNLSS 826
Query: 197 ISSPLELEGTVSRHGDLTHFVANNLQLKIRLSGAPPPPPSAPARPCPAPAPTPTPAIPPI 256
SP+E F+ N L + S P +P P P APTP+ A+ P+
Sbjct: 827 PVSPVEAS-----------FLPEN-SLSFQGSKDSPATTHSPTPPSPKGAPTPS-AVTPL 873
Query: 257 DPE 259
P+
Sbjct: 874 SPK 876
Score = 29.6 bits (65), Expect = 4.3
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 229 GAPPPP----PSAPARPCPAPAPTPTPAIPPIDPE 259
GAP P P A P P APTP PA+ P PE
Sbjct: 1592 GAPSPKELLIPPAVTSPSPKEAPTP-PAVTPPSPE 1625
Score = 29.6 bits (65), Expect = 4.3
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 227 LSGAPPPPPSAPARPCPAPAPTPTPAIPPIDPEVLRDLERLSREL 271
+S AP PP S P P P P P P P ++ LE S+ L
Sbjct: 1790 VSAAPSPPVSLPLAPSPVPTLPPKQQFLPSSPGLV--LESPSKPL 1832
Score = 29.3 bits (64), Expect = 5.7
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 229 GAPPPPPSAPARPCPAPAPTPTPAIPPIDP 258
GA PP + P P +PA TP P P P
Sbjct: 1031 GASTPPAATPPSPKGSPAATPLPKGAPTTP 1060
Score = 28.9 bits (63), Expect = 7.4
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 231 PPPPPSAPARPCPAPAPTPTPAIPPIDPE 259
PP P PA P P PT +PA+ P+ P+
Sbjct: 1386 PPSPKRGPAIPSPKGDPT-SPAVIPLSPK 1413
Score = 28.5 bits (62), Expect = 9.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 229 GAPPPPPSAPARPCPAPAPTPTP 251
GAP PP P P +PA TP P
Sbjct: 1007 GAPTPPAVTPPSPKGSPAATPFP 1029
>gi|239754474 PREDICTED: similar to mucin [Homo sapiens]
Length = 417
Score = 41.6 bits (96), Expect = 0.001
Identities = 71/277 (25%), Positives = 99/277 (35%), Gaps = 60/277 (21%)
Query: 26 GGGPGRTSSEPPAGLRVSGEEETENVGGANRHPRTSPKTSSCGVVHRPE---REALENEP 82
G G R S P+ + ++ E A P +S G HR E R+ + P
Sbjct: 117 GTGQRRGSRSSPSADQQRAQDREEEAAAA-------PVPTSRG--HRTEKRKRQQPQRRP 167
Query: 83 -GPQGTLSGAGS-----RRGAPGAEHE----PSLSSR-----HKNPAPPEGKPSSGRDCR 127
G G G+GS ++GA E E P+ +SR + P P+ +P+ G R
Sbjct: 168 AGGTGQRRGSGSSPSADQQGAQDREEEAAAAPAPTSRGHRTEKRKPQQPQCRPAGGTGQR 227
Query: 128 RGGPGGGMDVEQQEEEDNDEEAAAG----SRAGRSFSSRLQ--DSRSLDGLSEACGGAGS 181
RG +QQ +D +EEAAA SR R+ + Q R G + G S
Sbjct: 228 RGS-RSSPSADQQRAQDREEEAAAAPAPTSRGHRTEKRKPQQPQRRPAGGTGQRRGSGYS 286
Query: 182 SGSAESGA--------------GGGRRATISSPLELE-----GTVSRHGDLTHFVANNLQ 222
+ + GA G R L+L+ GT R G AN
Sbjct: 287 PSADQQGAQDREEEAAAAPAPTSSGHRTEKRKRLQLQCQPAGGTGQRRGSGCSSSANQ-- 344
Query: 223 LKIRLSGAPPPPPSAPARPCPAPAPTPTPAIPPIDPE 259
GA A A P P + T P P+
Sbjct: 345 -----QGAQDREEEAAAAPVPTSSGHRTEKRKPQQPQ 376
Score = 36.6 bits (83), Expect = 0.035
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 28/141 (19%)
Query: 26 GGGPGRTSSEPPAGLRVSGEEETENVGGANRHPRTSPKTSSCGVVHRPEREA---LENEP 82
G G R S P+ + ++ E A P +S G HR E+ L+ +P
Sbjct: 276 GTGQRRGSGYSPSADQQGAQDREEEAAAA-------PAPTSSG--HRTEKRKRLQLQCQP 326
Query: 83 -GPQGTLSGAG-----SRRGAPGAEHEPSL-----SSRHKN----PAPPEGKPSSGRDCR 127
G G G+G +++GA E E + SS H+ P P+ +P++G R
Sbjct: 327 AGGTGQRRGSGCSSSANQQGAQDREEEAAAAPVPTSSGHRTEKRKPQQPQRRPAAGTGQR 386
Query: 128 RGGPGGGMDVEQQEEEDNDEE 148
RG G +QQ +D +EE
Sbjct: 387 RGS-GSSPSADQQRAQDREEE 406
Score = 33.5 bits (75), Expect = 0.30
Identities = 46/164 (28%), Positives = 63/164 (38%), Gaps = 17/164 (10%)
Query: 34 SEPPAGLRVSGEEETENVGGAN--RHPRTSPKTSSCGVVHRPEREALENEPGPQGTLSGA 91
+E LR + + + GG R +SP G R E A P A
Sbjct: 27 NEKTKPLRPQQQPQCQPAGGTGQRRGSGSSPSADQQGAQDREEEAAA----APAADQQRA 82
Query: 92 GSRRGAPGAEHEPSLSSRHKNPAPP----EGKPSSGRDCRRGGPGGGMDVEQQEEEDNDE 147
R A P+ SS H+ + +P+ G RRG +QQ +D +E
Sbjct: 83 QDREEEAAAAPVPT-SSGHRTEKRKRLQLQCQPAGGTGQRRGSRSSP-SADQQRAQDREE 140
Query: 148 EAAAG----SRAGRSFS-SRLQDSRSLDGLSEACGGAGSSGSAE 186
EAAA SR R+ R Q R G + G+GSS SA+
Sbjct: 141 EAAAAPVPTSRGHRTEKRKRQQPQRRPAGGTGQRRGSGSSPSAD 184
Score = 32.3 bits (72), Expect = 0.67
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 9/116 (7%)
Query: 94 RRGAPGAEHEPSLSSRHKNPAPPEGKPS---SGRDCRRGGPGGGMDVEQQEEEDNDEEAA 150
R+ +E + L + P P+ +P +G +R G G +QQ +D +EEAA
Sbjct: 13 RKLRESSEGDQWLENEKTKPLRPQQQPQCQPAGGTGQRRGSGSSPSADQQGAQDREEEAA 72
Query: 151 AGSRAGRSFSSRLQDSRSLDGLSEACGGAGSSGS------AESGAGGGRRATISSP 200
A A + + ++ + + + G +G G RR + SSP
Sbjct: 73 AAPAADQQRAQDREEEAAAAPVPTSSGHRTEKRKRLQLQCQPAGGTGQRRGSRSSP 128
>gi|153791497 ciliary rootlet coiled-coil [Homo sapiens]
Length = 2017
Score = 41.6 bits (96), Expect = 0.001
Identities = 62/261 (23%), Positives = 94/261 (36%), Gaps = 44/261 (16%)
Query: 138 EQQEEEDNDEEAAAGS--RAGRSFSSRLQDSRSLDGLSEACGGAGSSGSAESGAGGGRRA 195
EQ+ E E GS A + +L +R L+ EA + A GR
Sbjct: 1354 EQEGEFRTRERRLLGSLEEARGTEKQQLDHARGLELKLEAARAEAAELGLRLSAAEGRAQ 1413
Query: 196 TISSPL-----ELEGTVSRHGDLTHFVANNLQLKIRLSGAPPPPPSAPARPCPA------ 244
+ + L + ++ G L + L L S AP P P +PAR PA
Sbjct: 1414 GLEAELARVEVQRRAAEAQLGGLRSALRRGLGLGRAPSPAPRPVPGSPARDAPAEGSGEG 1473
Query: 245 -----------------PAPTPTPAIPPIDPEV-----------LRDLERLSRELGGRVD 276
P P +PA P +DPE LR +R EL +
Sbjct: 1474 LNSPSTLECSPGSQPPSPGPATSPASPDLDPEAVRGALREFLQELRSAQRERDELRTQTS 1533
Query: 277 RLLRGLGGAVQELTALSVGCIQTYRDAVDS--LGEAVDMSIKGMYTLLARCEE-LERALQ 333
L R L E + + Q + +S +VD + G+ LA EE + R+ +
Sbjct: 1534 ALNRQLAEMEAERDSATSRARQLQKAVAESEEARRSVDGRLSGVQAELALQEESVRRSER 1593
Query: 334 PVQGLARQVRDIRRTLEVLEA 354
+ QV + R+L+ E+
Sbjct: 1594 ERRATLDQVATLERSLQATES 1614
>gi|4503355 dedicator of cytokinesis 1 [Homo sapiens]
Length = 1865
Score = 41.6 bits (96), Expect = 0.001
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 187 SGAGGGRRATISSPLELEGTVSRHGDLTHFVANNLQLKIRLSGAPPPPPSAP-ARPCPAP 245
+G G A + PL L+G+V+ +G NL L G+P PPP P R P P
Sbjct: 1788 NGMTGADVADVPPPLPLKGSVADYG--------NLMENQDLLGSPTPPPPPPHQRHLPPP 1839
Query: 246 APTPTPAIPP 255
P+ TP PP
Sbjct: 1840 LPSKTPPPPP 1849
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 41.6 bits (96), Expect = 0.001
Identities = 46/164 (28%), Positives = 65/164 (39%), Gaps = 15/164 (9%)
Query: 136 DVEQQEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDG-----LSEACGGAGSSGSAES--- 187
D E+ EE+D+D+E G G + + S DG +A GG G+ E+
Sbjct: 1964 DYEEDEEDDDDDEDDTG--MGDEGEDSNEGTGSADGNDGYEADDAEGGDGTDPGTETEES 2021
Query: 188 -GAGGGRRATISSPLELEG-TVSRHGDLTHFVANNLQLKIRLSGAPPPPPSAPARPCPAP 245
G G G S EG T + + V+ Q P P +P RP
Sbjct: 2022 MGGGEGNHRAADSQNSGEGNTGAAESSFSQEVSREQQPSSASERQAPRAPQSPRRPPHPL 2081
Query: 246 APTPTPAIPP--IDPEVLRDLERLSRELGGRVDRLLRGLGGAVQ 287
P T PP + P V R ++ R+ GR +L G+GG Q
Sbjct: 2082 PPRLTIHAPPQELGPPVQR-IQMTRRQSVGRGLQLTPGIGGMQQ 2124
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 41.6 bits (96), Expect = 0.001
Identities = 60/241 (24%), Positives = 89/241 (36%), Gaps = 20/241 (8%)
Query: 29 PGRTS--SEPPAGLRVSGEEETENVGGANRHPRTSPKTSSCGVVHRPEREA--LENEPGP 84
PGR S P G G + ++ G R P+ P+R+ L+ P P
Sbjct: 428 PGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPP 487
Query: 85 QGT--LSGAGSRRGAPGAEHEPSLSSRHKNPAPPEGKPSSGRDCR----RGGPGGGMDVE 138
QG LSG G G+P + PS +S + PA P+ G+ + GGP G
Sbjct: 488 QGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGP-GAPPAA 546
Query: 139 QQEEEDNDEEAAAGSRAGRSFSSRLQDSRSLDGLSEACGGAGSSGSAE---SGAGGGRRA 195
+ + + A +A R S G GG G + AG R+A
Sbjct: 547 RPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPP--GGQQRQGPPQKPPGPAGPTRQA 604
Query: 196 TISSPLELEGTVSRHGDLTHFVANNLQLKIRLSGAP----PPPPSAPARPCPAPAPTPTP 251
+ + P+ G + + K +L+ P PPP +A A P P +P
Sbjct: 605 SQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQLKASP 664
Query: 252 A 252
A
Sbjct: 665 A 665
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.132 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,625,529
Number of Sequences: 37866
Number of extensions: 1237994
Number of successful extensions: 24096
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 944
Number of HSP's that attempted gapping in prelim test: 13051
Number of HSP's gapped (non-prelim): 8860
length of query: 357
length of database: 18,247,518
effective HSP length: 103
effective length of query: 254
effective length of database: 14,347,320
effective search space: 3644219280
effective search space used: 3644219280
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.