Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PLSCR4 Sequence: fasta or formatted (239aa) NCBI GI: 190194381
Description:

phospholipid scramblase 4 isoform b

Referenced in:

Additional Membrane Functions

Other entries for this name:
alt prot [329aa] phospholipid scramblase 4 isoform a
alt prot [329aa] phospholipid scramblase 4 isoform a
alt prot [329aa] phospholipid scramblase 4 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         12           1
 C cysteine            2.5          6           1
 D aspartate           4.2         10           1
 E glutamate           4.6         11           1
 F phenylalanine       4.2         10           1
 G glycine             9.2         22           2
 H histidine           2.1          5           1
 I isoleucine          4.6         11           2
 K lysine              3.3          8           2
 L leucine             5.4         13           2
 M methionine          4.6         11           1
 N asparagine          3.8          9           1
 P proline            15.5         37           3
 Q glutamine           4.6         11           2
 R arginine            3.8          9           1
 S serine              6.3         15           1
 T threonine           3.8          9           1
 V valine              6.7         16           2
 W tryptophan          1.3          3           1
 Y tyrosine            4.6         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phospholipid scramblase 4 isoform b 
PLSCR4                0.496   phospholipid scramblase 4 isoform a 
PLSCR4                0.496   phospholipid scramblase 4 isoform a 
PLSCR4                0.496   phospholipid scramblase 4 isoform a 
PLSCR1                0.228   phospholipid scramblase 1 
PLSCR3                0.211   phospholipid scramblase 3 
PLSCR2                0.205   phospholipid scramblase 2 
PLSCR5                0.193   phospholipid scramblase family, member 5 
LOC440981             0.077   PREDICTED: similar to hCG1794790 
LOC440981             0.077   PREDICTED: similar to hCG1794790 
LOC440981             0.073   PREDICTED: similar to hCG1794790 
PRR13                 0.045   proline rich 13 isoform 1 
DAZAP1                0.041   DAZ associated protein 1 isoform a 
PRB4                  0.041   proline-rich protein BstNI subfamily 4 precursor [Ho...
WBP11                 0.039   WW domain binding protein 11 
WIPF2                 0.039   WIRE protein 
YLPM1                 0.039   YLP motif containing 1 
SF3B4                 0.037   splicing factor 3b, subunit 4 
PRB3                  0.037   proline-rich protein BstNI subfamily 3 precursor [H...
DAZAP1                0.037   DAZ associated protein 1 isoform b 
FMN2                  0.037   formin 2 
SFPQ                  0.037   splicing factor proline/glutamine rich (polypyrimidin...
RBM22                 0.035   RNA binding motif protein 22 
PRH1                  0.035   proline-rich protein HaeIII subfamily 1 
PRH2                  0.035   proline-rich protein HaeIII subfamily 2 
PRH2                  0.035   proline-rich protein HaeIII subfamily 2 
C16orf5               0.035   cell death inducing protein 
CCNK                  0.035   cyclin K isoform 1 
IGSF9B                0.035   immunoglobulin superfamily, member 9B 
NKX1-1                0.033   PREDICTED: NK1 homeobox 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press