Guide to the Human Genome
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Name: PLSCR4 Sequence: fasta or formatted (329aa) NCBI GI: 190194379
Description:

phospholipid scramblase 4 isoform a

Referenced in:

Additional Membrane Functions

Other entries for this name:
alt mRNA [329aa] phospholipid scramblase 4 isoform a
alt prot [239aa] phospholipid scramblase 4 isoform b
alt mRNA [329aa] phospholipid scramblase 4 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         14           1
 C cysteine            4.3         14           3
 D aspartate           5.2         17           2
 E glutamate           5.2         17           1
 F phenylalanine       4.9         16           1
 G glycine             7.0         23           2
 H histidine           2.1          7           1
 I isoleucine          4.6         15           2
 K lysine              2.7          9           2
 L leucine             5.5         18           2
 M methionine          5.2         17           2
 N asparagine          4.6         15           2
 P proline            12.5         41           3
 Q glutamine           4.6         15           2
 R arginine            5.5         18           1
 S serine              5.2         17           1
 T threonine           5.5         18           1
 V valine              6.4         21           2
 W tryptophan          0.9          3           1
 Y tyrosine            4.3         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phospholipid scramblase 4 isoform a 
PLSCR4                1.000   phospholipid scramblase 4 isoform a 
PLSCR4                1.000   phospholipid scramblase 4 isoform a 
PLSCR1                0.383   phospholipid scramblase 1 
PLSCR4                0.356   phospholipid scramblase 4 isoform b 
PLSCR2                0.315   phospholipid scramblase 2 
PLSCR5                0.265   phospholipid scramblase family, member 5 
PLSCR3                0.257   phospholipid scramblase 3 
LOC440981             0.095   PREDICTED: similar to hCG1794790 
LOC440981             0.093   PREDICTED: similar to hCG1794790 
LOC440981             0.090   PREDICTED: similar to hCG1794790 
PRR13                 0.032   proline rich 13 isoform 1 
MED25                 0.031   mediator complex subunit 25 
PRB4                  0.029   proline-rich protein BstNI subfamily 4 precursor [Ho...
WBP11                 0.028   WW domain binding protein 11 
WIPF2                 0.028   WIRE protein 
YLPM1                 0.028   YLP motif containing 1 
SF3B4                 0.026   splicing factor 3b, subunit 4 
PRB3                  0.026   proline-rich protein BstNI subfamily 3 precursor [H...
DAZAP1                0.026   DAZ associated protein 1 isoform a 
DAZAP1                0.026   DAZ associated protein 1 isoform b 
FMN2                  0.026   formin 2 
SFPQ                  0.026   splicing factor proline/glutamine rich (polypyrimidin...
RBM22                 0.025   RNA binding motif protein 22 
PRH1                  0.025   proline-rich protein HaeIII subfamily 1 
PRH2                  0.025   proline-rich protein HaeIII subfamily 2 
PRH2                  0.025   proline-rich protein HaeIII subfamily 2 
C16orf5               0.025   cell death inducing protein 
CCNK                  0.025   cyclin K isoform 1 
NKX1-1                0.023   PREDICTED: NK1 homeobox 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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