Guide to the Human Genome
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Name: LOC440981 Sequence: fasta or formatted (172aa) NCBI GI: 239748259
Description:

PREDICTED: similar to hCG1794790

Referenced in:

Additional Membrane Functions

Other entries for this name:
alt prot [172aa] PREDICTED: similar to hCG1794790
alt prot [172aa] PREDICTED: similar to hCG1794790
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5          6           1
 C cysteine            2.9          5           1
 D aspartate           4.1          7           1
 E glutamate           6.4         11           2
 F phenylalanine       7.0         12           1
 G glycine             5.8         10           1
 H histidine           2.3          4           1
 I isoleucine          7.0         12           1
 K lysine              5.8         10           1
 L leucine            14.0         24           2
 M methionine          2.9          5           1
 N asparagine          4.1          7           2
 P proline             4.1          7           1
 Q glutamine           4.7          8           1
 R arginine            4.1          7           1
 S serine              4.7          8           2
 T threonine           6.4         11           1
 V valine              4.7          8           1
 W tryptophan          1.2          2           1
 Y tyrosine            4.7          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1794790 
LOC440981             0.994   PREDICTED: similar to hCG1794790 
LOC440981             0.994   PREDICTED: similar to hCG1794790 
PLSCR1                0.230   phospholipid scramblase 1 
PLSCR5                0.215   phospholipid scramblase family, member 5 
PLSCR2                0.203   phospholipid scramblase 2 
PLSCR4                0.194   phospholipid scramblase 4 isoform a 
PLSCR4                0.194   phospholipid scramblase 4 isoform a 
PLSCR4                0.194   phospholipid scramblase 4 isoform a 
PLSCR3                0.167   phospholipid scramblase 3 
PLSCR4                0.115   phospholipid scramblase 4 isoform b 
DMXL2                 0.018   Dmx-like 2 
CCDC49                0.009   coiled-coil domain containing 49 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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