Guide to the Human Genome
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Name: PLSCR5 Sequence: fasta or formatted (271aa) NCBI GI: 146229354
Description:

phospholipid scramblase family, member 5

Referenced in:

Additional Membrane Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         14           2
 C cysteine            4.1         11           1
 D aspartate           5.2         14           1
 E glutamate           4.8         13           2
 F phenylalanine       6.3         17           2
 G glycine             7.0         19           1
 H histidine           1.1          3           1
 I isoleucine          7.0         19           3
 K lysine              4.4         12           1
 L leucine            10.3         28           2
 M methionine          1.5          4           1
 N asparagine          5.5         15           1
 P proline             7.0         19           2
 Q glutamine           4.8         13           2
 R arginine            3.3          9           2
 S serine              7.0         19           2
 T threonine           5.9         16           1
 V valine              5.9         16           1
 W tryptophan          1.5          4           1
 Y tyrosine            2.2          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phospholipid scramblase family, member 5 
PLSCR1                0.535   phospholipid scramblase 1 
PLSCR2                0.507   phospholipid scramblase 2 
PLSCR3                0.411   phospholipid scramblase 3 
PLSCR4                0.338   phospholipid scramblase 4 isoform a 
PLSCR4                0.338   phospholipid scramblase 4 isoform a 
PLSCR4                0.338   phospholipid scramblase 4 isoform a 
PLSCR4                0.177   phospholipid scramblase 4 isoform b 
LOC440981             0.117   PREDICTED: similar to hCG1794790 
LOC440981             0.112   PREDICTED: similar to hCG1794790 
LOC440981             0.108   PREDICTED: similar to hCG1794790 
GRIN3B                0.022   glutamate receptor, ionotropic, N-methyl-D-aspartate...
SEC24A                0.017   SEC24 related gene family, member A 
KALRN                 0.013   kalirin, RhoGEF kinase isoform 1 
KALRN                 0.013   kalirin, RhoGEF kinase isoform 3 
EP400                 0.013   E1A binding protein p400 
RAX                   0.009   retina and anterior neural fold homeobox 
GORASP2               0.009   golgi reassembly stacking protein 2 
MED15                 0.009   mediator complex subunit 15 isoform a 
MED15                 0.009   mediator complex subunit 15 isoform b 
FAM186A               0.009   family with sequence similarity 186, member A [Homo...
DNAH14                0.009   dynein, axonemal, heavy polypeptide 14 isoform 1 [H...
PLEKHN1               0.007   pleckstrin homology domain containing, family N mem...
PLEKHN1               0.007   pleckstrin homology domain containing, family N mem...
IRF5                  0.007   interferon regulatory factor 5 isoform c 
IRF5                  0.007   interferon regulatory factor 5 isoform b 
IRF5                  0.007   interferon regulatory factor 5 isoform d 
IRF5                  0.007   interferon regulatory factor 5 isoform c 
IRF5                  0.007   interferon regulatory factor 5 isoform c 
IRF5                  0.007   interferon regulatory factor 5 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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