Search of human proteins with 189571677

Search of human proteins with 189571677

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|189571677 NudC domain containing 1 isoform 1 [Homo sapiens]
         (583 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|189571677 NudC domain containing 1 isoform 1 [Homo sapiens]       1186   0.0  
gi|189571679 NudC domain containing 1 isoform 2 [Homo sapiens]       1107   0.0  
gi|5729953 nuclear distribution gene C homolog [Homo sapiens]          49   2e-05
gi|21687129 NudC domain containing 2 [Homo sapiens]                    44   3e-04
gi|5730041 suppressor of G2 allele of SKP1 isoform b [Homo sapiens]    37   0.038
gi|195963398 suppressor of G2 allele of SKP1 isoform a [Homo sap...    37   0.065
gi|122939165 NudC domain containing 3 [Homo sapiens]                   37   0.065
gi|57529246 ubiquitin thioesterase 19 [Homo sapiens]                   33   0.72 
gi|83715968 sarcoma antigen NY-SAR-79 [Homo sapiens]                   32   1.6  
gi|239743649 PREDICTED: IQ motif and ankyrin repeat domain-conta...    32   2.1  
gi|239754976 PREDICTED: IQ motif and ankyrin repeat domain-conta...    31   2.8  
gi|126116565 MYC binding protein 2 [Homo sapiens]                      31   3.6  
gi|62241003 cardiomyopathy associated 5 [Homo sapiens]                 31   3.6  
gi|7706573 stromal cell derived factor 4 isoform 1 precursor [Ho...    30   4.7  
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof...    30   4.7  
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof...    30   4.7  
gi|33624873 spectrin repeat containing, nuclear envelope 2 isofo...    30   4.7  
gi|33624861 spectrin repeat containing, nuclear envelope 2 isofo...    30   4.7  
gi|25901062 hypothetical protein LOC56261 [Homo sapiens]               30   8.0  

>gi|189571677 NudC domain containing 1 isoform 1 [Homo sapiens]
          Length = 583

 Score = 1186 bits (3069), Expect = 0.0
 Identities = 583/583 (100%), Positives = 583/583 (100%)

Query: 1   MEVAANCSLRVKRPLLDPRFEGYKLSLEPLPCYQLELDAAVAEVKLRDDQYTLEHMHAFG 60
           MEVAANCSLRVKRPLLDPRFEGYKLSLEPLPCYQLELDAAVAEVKLRDDQYTLEHMHAFG
Sbjct: 1   MEVAANCSLRVKRPLLDPRFEGYKLSLEPLPCYQLELDAAVAEVKLRDDQYTLEHMHAFG 60

Query: 61  MYNYLHCDSWYQDSVYYIDTLGRIMNLTVMLDTALGKPREVFRLPTDLTACDNRLCASIH 120
           MYNYLHCDSWYQDSVYYIDTLGRIMNLTVMLDTALGKPREVFRLPTDLTACDNRLCASIH
Sbjct: 61  MYNYLHCDSWYQDSVYYIDTLGRIMNLTVMLDTALGKPREVFRLPTDLTACDNRLCASIH 120

Query: 121 FSSSTWVTLSDGTGRLYVIGTGERGNSASEKWEIMFNEELGDPFIIIHSISLLNAEEHSI 180
           FSSSTWVTLSDGTGRLYVIGTGERGNSASEKWEIMFNEELGDPFIIIHSISLLNAEEHSI
Sbjct: 121 FSSSTWVTLSDGTGRLYVIGTGERGNSASEKWEIMFNEELGDPFIIIHSISLLNAEEHSI 180

Query: 181 ATLLLRIEKEELDMKGSGFYVSLEWVTISKKNQDNKKYEIIKRDILRGKSVPHYAAIEPD 240
           ATLLLRIEKEELDMKGSGFYVSLEWVTISKKNQDNKKYEIIKRDILRGKSVPHYAAIEPD
Sbjct: 181 ATLLLRIEKEELDMKGSGFYVSLEWVTISKKNQDNKKYEIIKRDILRGKSVPHYAAIEPD 240

Query: 241 GNGLMIVSYKSLTFVQAGQDLEENMDEDISEKIKEPLYYWQQTEDDLTVTIRLPEDSTKE 300
           GNGLMIVSYKSLTFVQAGQDLEENMDEDISEKIKEPLYYWQQTEDDLTVTIRLPEDSTKE
Sbjct: 241 GNGLMIVSYKSLTFVQAGQDLEENMDEDISEKIKEPLYYWQQTEDDLTVTIRLPEDSTKE 300

Query: 301 DIQIQFLPDHINIVLKDHQFLEGKLYSSIDHESSTWIIKESNSLEISLIKKNEGLTWPEL 360
           DIQIQFLPDHINIVLKDHQFLEGKLYSSIDHESSTWIIKESNSLEISLIKKNEGLTWPEL
Sbjct: 301 DIQIQFLPDHINIVLKDHQFLEGKLYSSIDHESSTWIIKESNSLEISLIKKNEGLTWPEL 360

Query: 361 VIGDKQGELIRDSAQCAAIAERLMHLTSEELNPNPDKEKPPCNAQELEECDIFFEESSSL 420
           VIGDKQGELIRDSAQCAAIAERLMHLTSEELNPNPDKEKPPCNAQELEECDIFFEESSSL
Sbjct: 361 VIGDKQGELIRDSAQCAAIAERLMHLTSEELNPNPDKEKPPCNAQELEECDIFFEESSSL 420

Query: 421 CRFDGNTLKTTHVVNLGSNQYLFSVIVDPKEMPCFCLRHDVDALLWQPHSSKQDDMWEHI 480
           CRFDGNTLKTTHVVNLGSNQYLFSVIVDPKEMPCFCLRHDVDALLWQPHSSKQDDMWEHI
Sbjct: 421 CRFDGNTLKTTHVVNLGSNQYLFSVIVDPKEMPCFCLRHDVDALLWQPHSSKQDDMWEHI 480

Query: 481 ATFNALGYVQASKRDKKFFACAPNYSYAALCECLRRVFIYRQPAPMSTVLYNRKEGRQVG 540
           ATFNALGYVQASKRDKKFFACAPNYSYAALCECLRRVFIYRQPAPMSTVLYNRKEGRQVG
Sbjct: 481 ATFNALGYVQASKRDKKFFACAPNYSYAALCECLRRVFIYRQPAPMSTVLYNRKEGRQVG 540

Query: 541 QVAKQQVASLETNDPILGFQATNERLFVLTTKNLFLIKVNTEN 583
           QVAKQQVASLETNDPILGFQATNERLFVLTTKNLFLIKVNTEN
Sbjct: 541 QVAKQQVASLETNDPILGFQATNERLFVLTTKNLFLIKVNTEN 583


>gi|189571679 NudC domain containing 1 isoform 2 [Homo sapiens]
          Length = 554

 Score = 1107 bits (2864), Expect = 0.0
 Identities = 544/544 (100%), Positives = 544/544 (100%)

Query: 40  AVAEVKLRDDQYTLEHMHAFGMYNYLHCDSWYQDSVYYIDTLGRIMNLTVMLDTALGKPR 99
           AVAEVKLRDDQYTLEHMHAFGMYNYLHCDSWYQDSVYYIDTLGRIMNLTVMLDTALGKPR
Sbjct: 11  AVAEVKLRDDQYTLEHMHAFGMYNYLHCDSWYQDSVYYIDTLGRIMNLTVMLDTALGKPR 70

Query: 100 EVFRLPTDLTACDNRLCASIHFSSSTWVTLSDGTGRLYVIGTGERGNSASEKWEIMFNEE 159
           EVFRLPTDLTACDNRLCASIHFSSSTWVTLSDGTGRLYVIGTGERGNSASEKWEIMFNEE
Sbjct: 71  EVFRLPTDLTACDNRLCASIHFSSSTWVTLSDGTGRLYVIGTGERGNSASEKWEIMFNEE 130

Query: 160 LGDPFIIIHSISLLNAEEHSIATLLLRIEKEELDMKGSGFYVSLEWVTISKKNQDNKKYE 219
           LGDPFIIIHSISLLNAEEHSIATLLLRIEKEELDMKGSGFYVSLEWVTISKKNQDNKKYE
Sbjct: 131 LGDPFIIIHSISLLNAEEHSIATLLLRIEKEELDMKGSGFYVSLEWVTISKKNQDNKKYE 190

Query: 220 IIKRDILRGKSVPHYAAIEPDGNGLMIVSYKSLTFVQAGQDLEENMDEDISEKIKEPLYY 279
           IIKRDILRGKSVPHYAAIEPDGNGLMIVSYKSLTFVQAGQDLEENMDEDISEKIKEPLYY
Sbjct: 191 IIKRDILRGKSVPHYAAIEPDGNGLMIVSYKSLTFVQAGQDLEENMDEDISEKIKEPLYY 250

Query: 280 WQQTEDDLTVTIRLPEDSTKEDIQIQFLPDHINIVLKDHQFLEGKLYSSIDHESSTWIIK 339
           WQQTEDDLTVTIRLPEDSTKEDIQIQFLPDHINIVLKDHQFLEGKLYSSIDHESSTWIIK
Sbjct: 251 WQQTEDDLTVTIRLPEDSTKEDIQIQFLPDHINIVLKDHQFLEGKLYSSIDHESSTWIIK 310

Query: 340 ESNSLEISLIKKNEGLTWPELVIGDKQGELIRDSAQCAAIAERLMHLTSEELNPNPDKEK 399
           ESNSLEISLIKKNEGLTWPELVIGDKQGELIRDSAQCAAIAERLMHLTSEELNPNPDKEK
Sbjct: 311 ESNSLEISLIKKNEGLTWPELVIGDKQGELIRDSAQCAAIAERLMHLTSEELNPNPDKEK 370

Query: 400 PPCNAQELEECDIFFEESSSLCRFDGNTLKTTHVVNLGSNQYLFSVIVDPKEMPCFCLRH 459
           PPCNAQELEECDIFFEESSSLCRFDGNTLKTTHVVNLGSNQYLFSVIVDPKEMPCFCLRH
Sbjct: 371 PPCNAQELEECDIFFEESSSLCRFDGNTLKTTHVVNLGSNQYLFSVIVDPKEMPCFCLRH 430

Query: 460 DVDALLWQPHSSKQDDMWEHIATFNALGYVQASKRDKKFFACAPNYSYAALCECLRRVFI 519
           DVDALLWQPHSSKQDDMWEHIATFNALGYVQASKRDKKFFACAPNYSYAALCECLRRVFI
Sbjct: 431 DVDALLWQPHSSKQDDMWEHIATFNALGYVQASKRDKKFFACAPNYSYAALCECLRRVFI 490

Query: 520 YRQPAPMSTVLYNRKEGRQVGQVAKQQVASLETNDPILGFQATNERLFVLTTKNLFLIKV 579
           YRQPAPMSTVLYNRKEGRQVGQVAKQQVASLETNDPILGFQATNERLFVLTTKNLFLIKV
Sbjct: 491 YRQPAPMSTVLYNRKEGRQVGQVAKQQVASLETNDPILGFQATNERLFVLTTKNLFLIKV 550

Query: 580 NTEN 583
           NTEN
Sbjct: 551 NTEN 554


>gi|5729953 nuclear distribution gene C homolog [Homo sapiens]
          Length = 331

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 13/121 (10%)

Query: 259 QDLEENMDEDISEKIKE----------PLYYWQQT--EDDLTVTIRLPEDSTKEDIQIQF 306
           QD EE+ +ED  +K K           P Y W QT  E DL V   +      +D+ +  
Sbjct: 143 QDTEEDEEEDEKDKGKLKPNLGNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDI 202

Query: 307 LPDHINIVLKDHQ-FLEGKLYSSIDHESSTWIIKESNSLEISLIKKNEGLTWPELVIGDK 365
              H+ + LK     ++G+LY+ +  E S+W+I++   + + L K N+   W  LV  D 
Sbjct: 203 QRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDP 262

Query: 366 Q 366
           +
Sbjct: 263 E 263


>gi|21687129 NudC domain containing 2 [Homo sapiens]
          Length = 157

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 25/110 (22%), Positives = 52/110 (47%), Gaps = 3/110 (2%)

Query: 276 PLYYWQQTEDDLTVTIRLPEDSTKEDIQIQFLPDHINIVLKDHQFLEGKLYSSIDHESST 335
           P   W QT +++ + +++P  +  +DIQ      H+ + +   + L+GKL+ S   +  T
Sbjct: 17  PWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALSVGGREILKGKLFDSTIADEGT 76

Query: 336 WIIKESNSLEISL--IKKNEGLTWPELVIGDKQGE-LIRDSAQCAAIAER 382
           W +++   + I L   K++    W  L+  +   +  ++D  Q     ER
Sbjct: 77  WTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLER 126


>gi|5730041 suppressor of G2 allele of SKP1 isoform b [Homo sapiens]
          Length = 333

 Score = 37.4 bits (85), Expect = 0.038
 Identities = 33/152 (21%), Positives = 70/152 (46%), Gaps = 9/152 (5%)

Query: 215 NKKYEIIKRDILRGKSVPHYAAIEP--DGNGLMIVSYKSLTFVQAGQDLEENMDEDISEK 272
           N    ++++ I       + AA+E   +G  L         +++  Q+ +   + ++   
Sbjct: 77  NNSTAMLRKGICEYHEKNYAAALETFTEGQKLDSADANFSVWIKRCQEAQNGSESEVWTH 136

Query: 273 IKEPLYYWQQTEDDLTVTIRLPEDSTKEDIQIQFLPDHINIVLK----DHQFLEGKLYSS 328
             +  Y W QTE  + +T+ + ++  K D+ ++F    ++ ++K    +   L+ +L   
Sbjct: 137 QSKIKYDWYQTESQVVITLMI-KNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHP 195

Query: 329 IDHESSTWIIKESNSLEISLIKKNEGLTWPEL 360
           I  E ST+ +  S  +EI L KK E + W +L
Sbjct: 196 IIPEQSTFKVL-STKIEIKL-KKPEAVRWEKL 225


>gi|195963398 suppressor of G2 allele of SKP1 isoform a [Homo
           sapiens]
          Length = 365

 Score = 36.6 bits (83), Expect = 0.065
 Identities = 28/129 (21%), Positives = 61/129 (47%), Gaps = 7/129 (5%)

Query: 236 AIEPDGNGLMIVSYKSLTFVQAGQDLEENMDEDISEKIKEPLYYWQQTEDDLTVTIRLPE 295
           A++    G+         +++  Q+ +   + ++     +  Y W QTE  + +T+ + +
Sbjct: 132 ALDSQSAGITGADANFSVWIKRCQEAQNGSESEVWTHQSKIKYDWYQTESQVVITLMI-K 190

Query: 296 DSTKEDIQIQFLPDHINIVLK----DHQFLEGKLYSSIDHESSTWIIKESNSLEISLIKK 351
           +  K D+ ++F    ++ ++K    +   L+ +L   I  E ST+ +  S  +EI L KK
Sbjct: 191 NVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVL-STKIEIKL-KK 248

Query: 352 NEGLTWPEL 360
            E + W +L
Sbjct: 249 PEAVRWEKL 257


>gi|122939165 NudC domain containing 3 [Homo sapiens]
          Length = 361

 Score = 36.6 bits (83), Expect = 0.065
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 6/93 (6%)

Query: 278 YYWQQTEDDLTVTIRLPEDSTK-EDIQIQFLPDHINIVLKDHQ----FLEGKLYSSIDHE 332
           Y W Q   DL V + +P+   K + + +      I + + +       +EGKL   I+ E
Sbjct: 190 YTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTE 249

Query: 333 SSTWIIKESNSLEISLIKKNEGLTWPELVIGDK 365
           SS W ++    + ++L K  E   W  ++ G++
Sbjct: 250 SSLWSLEPGKCVLVNLSKVGE-YWWNAILEGEE 281


>gi|57529246 ubiquitin thioesterase 19 [Homo sapiens]
          Length = 1318

 Score = 33.1 bits (74), Expect = 0.72
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 1/89 (1%)

Query: 275 EPLYYWQQTEDDLTVTIRLPEDSTK-EDIQIQFLPDHINIVLKDHQFLEGKLYSSIDHES 333
           E L  W+Q+ +++ V +R+     + ED+   F      +     Q   G  Y+ I    
Sbjct: 115 ELLLDWRQSAEEVIVKLRVGVGPLQLEDVDAAFTDTDCVVRFAGGQQWGGVFYAEIKSSC 174

Query: 334 STWIIKESNSLEISLIKKNEGLTWPELVI 362
           +    ++ + L ++L KK   LTWP L++
Sbjct: 175 AKVQTRKGSLLHLTLPKKVPMLTWPSLLV 203


>gi|83715968 sarcoma antigen NY-SAR-79 [Homo sapiens]
          Length = 1079

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 23/101 (22%), Positives = 54/101 (53%), Gaps = 9/101 (8%)

Query: 256 QAGQDLEE--NMDEDISEKIKEPLYYWQQTEDDLTVTIRLPEDSTKEDIQIQF-LPDHIN 312
           Q  Q+L+E  NM+ +++EKI E + + Q+ + D+ ++ +  +   ++ IQ    +   + 
Sbjct: 247 QKFQELQERLNMELELNEKINEEITHIQEEKQDIIISFQHMQQLLRQQIQANTEMEAELK 306

Query: 313 IVLKDHQFLEGKLYSSIDHESSTWIIKESNSLEISLIKKNE 353
           ++ +++Q LE       D+E     +KE+    ++L  ++E
Sbjct: 307 VLKENNQTLER------DNELQREKVKENEEKFLNLQNEHE 341


>gi|239743649 PREDICTED: IQ motif and ankyrin repeat
           domain-containing protein LOC642574 [Homo sapiens]
          Length = 580

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 35/163 (21%), Positives = 57/163 (34%), Gaps = 35/163 (21%)

Query: 330 DHESSTWIIKESNSLEISLIKKNEGLTWPELVIGDKQGELIRDSAQCAAIAERLMHLTSE 389
           +H+   W   +   L +  IK  E            Q + +R  AQ A  A  +  L   
Sbjct: 365 EHDQCEWRCMDKTKLTLQAIKDTEA-----------QVDRLRQEAQKAEEALAMARLELR 413

Query: 390 ELNPNPDKEKPPCNAQELEECDIFFEESSSLCRFDGNTLKTTHVVNLGSNQYLFSVIVDP 449
           E     ++E P    Q  E  D+  ++  +  R DG                 + +++DP
Sbjct: 414 EQTQEGEEEAPGLKCQVTELHDVLMKDVGNRIRADGR----------------WPLVIDP 457

Query: 450 KEMPCFCLRHD----VDALLWQPHSSKQDDMWEHIATFNALGY 488
                  LR+     VD +   P   + + MW  +A   AL Y
Sbjct: 458 LGQAATFLRYQDTNYVDTV--NPEPLRPETMW--LALLGALRY 496


>gi|239754976 PREDICTED: IQ motif and ankyrin repeat
           domain-containing protein LOC642574 [Homo sapiens]
          Length = 484

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 35/163 (21%), Positives = 57/163 (34%), Gaps = 35/163 (21%)

Query: 330 DHESSTWIIKESNSLEISLIKKNEGLTWPELVIGDKQGELIRDSAQCAAIAERLMHLTSE 389
           +H+   W   +   L +  IK  E            Q + +R  AQ A  A  +  L   
Sbjct: 269 EHDQCEWRCMDKTKLTLQAIKDTEA-----------QVDRLRQEAQKAEEALAMARLELR 317

Query: 390 ELNPNPDKEKPPCNAQELEECDIFFEESSSLCRFDGNTLKTTHVVNLGSNQYLFSVIVDP 449
           E     ++E P    Q  E  D+  ++  +  R DG                 + +++DP
Sbjct: 318 EQTQEGEEEAPGLKCQVTELHDVLMKDVGNRIRADGR----------------WPLVIDP 361

Query: 450 KEMPCFCLRHD----VDALLWQPHSSKQDDMWEHIATFNALGY 488
                  LR+     VD +   P   + + MW  +A   AL Y
Sbjct: 362 LGQAATFLRYQDTNYVDTV--NPEPLRPERMW--LALLGALRY 400


>gi|126116565 MYC binding protein 2 [Homo sapiens]
          Length = 4640

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 119  IHFSSSTWVTLSDGTGRLYVIGTGERGNSASEKWEIMFNEELGDPFIIIHSISLLNAEE 177
            IH     W+ L+D T + YV       N  +E W + FN+ LG   ++    S  N ++
Sbjct: 2469 IHNDDGVWLRLNDETIKKYVPNM----NGYTEAWCLSFNQHLGKSLLVPVDESKTNTDD 2523


>gi|62241003 cardiomyopathy associated 5 [Homo sapiens]
          Length = 4069

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 60/271 (22%), Positives = 107/271 (39%), Gaps = 29/271 (10%)

Query: 168 HSISLLNAEEHSIATLLLRIEKEELDMKGSGFYVSLEWVTISKKNQDNKKYEIIKRDILR 227
           H +   +    + AT+ LR  KEE ++   G   S    ++S    +    E+ K D+  
Sbjct: 374 HEVEPPSVTPDTPATMFLRTTKEECELASPGTAASENDSSVSPSFAN----EVKKEDVY- 428

Query: 228 GKSVPHYAAIEPDGNGLMIVSYKSLTFVQAGQDLEE-NMDEDISEKI--KEPLYYWQQTE 284
             S  H  ++E    GL   +   L   Q   DL      E +S K+    P    ++ E
Sbjct: 429 --SAHHSISLEAASPGLAASTQDGLDPDQEQPDLTSIERAEPVSAKLTPTHPSVKGEKEE 486

Query: 285 DDLTVTIRLP-----EDSTKEDIQIQFLPDHINIVLKDHQFLEGKLYSSIDHESSTWIIK 339
           + L  +I L      E+  KE+I+   LP  I    +D   +E ++   +D+  S  + +
Sbjct: 487 NMLEPSISLSEPLMLEEPEKEEIETS-LPIAITPEPEDSNLVEEEIV-ELDYPESPLVSE 544

Query: 340 ESNSLEIS--LIKKNEGLTWPELVIG---------DKQGELIRDSAQCAAIAE-RLMHLT 387
           +     +S  +  K E L  P L            +++ E+   S   A ++E  +    
Sbjct: 545 KPFPPHMSPEVEHKEEELILPLLAASSPEHVALSEEEREEIASVSTGSAFVSEYSVPQDL 604

Query: 388 SEELNPNPDKEKPPCNAQELEECDIFFEESS 418
           + EL     +  PP N + + E  +  EE +
Sbjct: 605 NHELQEQEGEPVPPSNVEAIAEHAVLSEEEN 635


>gi|7706573 stromal cell derived factor 4 isoform 1 precursor [Homo
           sapiens]
          Length = 348

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 39/185 (21%), Positives = 76/185 (41%), Gaps = 32/185 (17%)

Query: 229 KSVPHYAAIEPDGNG-LMIVSYKSLTFVQAGQDLEENMD--------------EDISEKI 273
           +S  H+ A++PDG+G +    YK       G   +E  D              +++ E +
Sbjct: 141 ESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDEETQEVLENL 200

Query: 274 KEPLYYWQQTEDDLTVTIRLPEDSTKEDIQIQFL-PDHINIVLKDHQFLEGKLYSSIDHE 332
           K+  Y       DL +T         E+  + FL P+H   +L+   F+  ++   +D +
Sbjct: 201 KDRWYQADSPPADLLLT---------EEEFLSFLHPEHSRGMLR---FMVKEIVRDLDQD 248

Query: 333 SSTWI-IKESNSLEISLIKKNEGLTWPELVIGDKQ---GELIRDSAQCAAIAERLMHLTS 388
               + + E  SL +  ++  +G    +  + D++    ELI  +      AE L ++ +
Sbjct: 249 GDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELENVPT 308

Query: 389 EELNP 393
             L P
Sbjct: 309 LPLQP 313


>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
            [Homo sapiens]
          Length = 6907

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 33/148 (22%), Positives = 69/148 (46%), Gaps = 27/148 (18%)

Query: 140  GTGERGNSASEKWEIMFNEELGDPFIIIHSISLLNAEEHSIATLLLRIEKEELDMKGSGF 199
            G  E+ + A ++WE++  +EL +   I  ++  LN++  +I T L + E E         
Sbjct: 6546 GITEQQSGAFDRWEMIQAQELHNKLKIKQNLQQLNSDISAITTWLKKTEAE--------- 6596

Query: 200  YVSLEWVTISKKNQDNKKYEI-IKR--DILRGKSVPHYAAIEPDGNGLMIVSYKSLTFVQ 256
               LE + ++K   D ++ E+ +KR  +IL  K+   Y A+      ++ V+  S  F+Q
Sbjct: 6597 ---LEMLKMAKPPSDIQEIELRVKRLQEIL--KAFDTYKAL------VVSVNVSSKEFLQ 6645

Query: 257  AGQDLEENMDEDISEKIKEPLYYWQQTE 284
                 E     ++  ++++    W+  +
Sbjct: 6646 T----ESPESTELQSRLRQLSLLWEAAQ 6669


>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
            [Homo sapiens]
          Length = 6885

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 33/148 (22%), Positives = 69/148 (46%), Gaps = 27/148 (18%)

Query: 140  GTGERGNSASEKWEIMFNEELGDPFIIIHSISLLNAEEHSIATLLLRIEKEELDMKGSGF 199
            G  E+ + A ++WE++  +EL +   I  ++  LN++  +I T L + E E         
Sbjct: 6523 GITEQQSGAFDRWEMIQAQELHNKLKIKQNLQQLNSDISAITTWLKKTEAE--------- 6573

Query: 200  YVSLEWVTISKKNQDNKKYEI-IKR--DILRGKSVPHYAAIEPDGNGLMIVSYKSLTFVQ 256
               LE + ++K   D ++ E+ +KR  +IL  K+   Y A+      ++ V+  S  F+Q
Sbjct: 6574 ---LEMLKMAKPPSDIQEIELRVKRLQEIL--KAFDTYKAL------VVSVNVSSKEFLQ 6622

Query: 257  AGQDLEENMDEDISEKIKEPLYYWQQTE 284
                 E     ++  ++++    W+  +
Sbjct: 6623 T----ESPESTELQSRLRQLSLLWEAAQ 6646


>gi|33624873 spectrin repeat containing, nuclear envelope 2 isoform
           4 [Homo sapiens]
          Length = 556

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 33/148 (22%), Positives = 69/148 (46%), Gaps = 27/148 (18%)

Query: 140 GTGERGNSASEKWEIMFNEELGDPFIIIHSISLLNAEEHSIATLLLRIEKEELDMKGSGF 199
           G  E+ + A ++WE++  +EL +   I  ++  LN++  +I T L + E E         
Sbjct: 180 GITEQQSGAFDRWEMIQAQELHNKLKIKQNLQQLNSDISAITTWLKKTEAE--------- 230

Query: 200 YVSLEWVTISKKNQDNKKYEI-IKR--DILRGKSVPHYAAIEPDGNGLMIVSYKSLTFVQ 256
              LE + ++K   D ++ E+ +KR  +IL  K+   Y A+      ++ V+  S  F+Q
Sbjct: 231 ---LEMLKMAKPPSDIQEIELRVKRLQEIL--KAFDTYKAL------VVSVNVSSKEFLQ 279

Query: 257 AGQDLEENMDEDISEKIKEPLYYWQQTE 284
                E     ++  ++++    W+  +
Sbjct: 280 T----ESPESTELQSRLRQLSLLWEAAQ 303


>gi|33624861 spectrin repeat containing, nuclear envelope 2 isoform
           2 [Homo sapiens]
          Length = 429

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 33/148 (22%), Positives = 69/148 (46%), Gaps = 27/148 (18%)

Query: 140 GTGERGNSASEKWEIMFNEELGDPFIIIHSISLLNAEEHSIATLLLRIEKEELDMKGSGF 199
           G  E+ + A ++WE++  +EL +   I  ++  LN++  +I T L + E E         
Sbjct: 54  GITEQQSGAFDRWEMIQAQELHNKLKIKQNLQQLNSDISAITTWLKKTEAE--------- 104

Query: 200 YVSLEWVTISKKNQDNKKYEI-IKR--DILRGKSVPHYAAIEPDGNGLMIVSYKSLTFVQ 256
              LE + ++K   D ++ E+ +KR  +IL  K+   Y A+      ++ V+  S  F+Q
Sbjct: 105 ---LEMLKMAKPPSDIQEIELRVKRLQEIL--KAFDTYKAL------VVSVNVSSKEFLQ 153

Query: 257 AGQDLEENMDEDISEKIKEPLYYWQQTE 284
                E     ++  ++++    W+  +
Sbjct: 154 T----ESPESTELQSRLRQLSLLWEAAQ 177


>gi|25901062 hypothetical protein LOC56261 [Homo sapiens]
          Length = 672

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 18/33 (54%), Positives = 19/33 (57%)

Query: 321 LEGKLYSSIDHESSTWIIKESNSLEISLIKKNE 353
           LEG      D  S T + K SNSLEISLI  NE
Sbjct: 163 LEGLEEDDDDRVSPTVLHKMSNSLEISLISDNE 195


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,235,312
Number of Sequences: 37866
Number of extensions: 1010688
Number of successful extensions: 2246
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2227
Number of HSP's gapped (non-prelim): 26
length of query: 583
length of database: 18,247,518
effective HSP length: 108
effective length of query: 475
effective length of database: 14,157,990
effective search space: 6725045250
effective search space used: 6725045250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.