Guide to the Human Genome
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Name: LOC642574 Sequence: fasta or formatted (580aa) NCBI GI: 239743649
Description:

PREDICTED: IQ motif and ankyrin repeat domain-containing protein LOC642574

Not currently referenced in the text

Other entries for this name:
alt prot {484aa} PREDICTED: IQ motif and ankyrin repeat domain-containing protein ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         65           3
 C cysteine            1.6          9           1
 D aspartate           4.5         26           1
 E glutamate          11.7         68           3
 F phenylalanine       2.4         14           2
 G glycine             6.9         40           2
 H histidine           1.2          7           1
 I isoleucine          1.2          7           1
 K lysine              2.6         15           1
 L leucine            11.7         68           2
 M methionine          1.6          9           1
 N asparagine          1.0          6           1
 P proline             6.0         35           2
 Q glutamine           7.9         46           3
 R arginine           12.4         72           4
 S serine              3.8         22           2
 T threonine           4.0         23           1
 V valine              5.5         32           2
 W tryptophan          0.9          5           1
 Y tyrosine            1.9         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: IQ motif and ankyrin repeat domain-conta... 
LOC642574             0.762   PREDICTED: IQ motif and ankyrin repeat domain-conta...
PLEC1                 0.036   plectin 1 isoform 11 
PLEC1                 0.036   plectin 1 isoform 10 
PLEC1                 0.036   plectin 1 isoform 8 
PLEC1                 0.036   plectin 1 isoform 7 
PLEC1                 0.036   plectin 1 isoform 6 
PLEC1                 0.036   plectin 1 isoform 3 
PLEC1                 0.036   plectin 1 isoform 2 
PLEC1                 0.036   plectin 1 isoform 1 
ANK1                  0.031   ankyrin 1 isoform 9 
MYH14                 0.031   myosin, heavy chain 14 isoform 1 
MYH14                 0.031   myosin, heavy chain 14 isoform 2 
MYH14                 0.031   myosin, heavy chain 14 isoform 3 
ASB3                  0.030   ankyrin repeat and SOCS box-containing protein 3 iso...
ASB3                  0.030   ankyrin repeat and SOCS box-containing protein 3 isof...
FYCO1                 0.028   FYVE and coiled-coil domain containing 1 
ANK3                  0.028   ankyrin 3 isoform 1 
ANKRD11               0.028   ankyrin repeat domain 11 
CROCC                 0.028   ciliary rootlet coiled-coil 
ANK1                  0.028   ankyrin 1 isoform 1 
ANK1                  0.028   ankyrin 1 isoform 3 
ANK1                  0.028   ankyrin 1 isoform 2 
ANK1                  0.028   ankyrin 1 isoform 4 
TCHH                  0.027   trichohyalin 
TNKS2                 0.027   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
MIB1                  0.026   mindbomb homolog 1 
ANKRD55               0.026   ankyrin repeat domain 55 isoform 1 
ANK2                  0.025   ankyrin 2 isoform 3 
ANK2                  0.025   ankyrin 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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