Guide to the Human Genome
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Name: RP5-1022P6.2 Sequence: fasta or formatted (672aa) NCBI GI: 25901062
Description:

hypothetical protein LOC56261

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         27           2
 C cysteine            2.4         16           2
 D aspartate           6.2         42           4
 E glutamate           7.6         51           2
 F phenylalanine       4.5         30           2
 G glycine             5.8         39           2
 H histidine           2.2         15           1
 I isoleucine          6.5         44           3
 K lysine              6.4         43           3
 L leucine            10.4         70           2
 M methionine          2.1         14           1
 N asparagine          4.3         29           1
 P proline             5.4         36           2
 Q glutamine           4.2         28           2
 R arginine            4.5         30           2
 S serine              7.7         52           2
 T threonine           5.5         37           3
 V valine              6.4         43           2
 W tryptophan          1.5         10           1
 Y tyrosine            2.4         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC56261 
GDE1                  0.014   glycerophosphodiester phosphodiesterase 1 
GDPD2                 0.014   osteoblast differentiation promoting factor protein ...
GDPD4                 0.013   glycerophosphodiester phosphodiesterase domain conta...
LRRFIP1               0.009   leucine rich repeat (in FLII) interacting protein 1...
LRRFIP1               0.009   leucine rich repeat (in FLII) interacting protein 1...
LRRFIP1               0.009   leucine rich repeat (in FLII) interacting protein 1...
GDPD3                 0.007   glycerophosphodiester phosphodiesterase domain cont...
GDPD1                 0.006   glycerophosphodiester phosphodiesterase domain conta...
GDPD5                 0.006   glycerophosphodiester phosphodiesterase domain cont...
EFHC2                 0.005   EF-hand domain (C-terminal) containing 2 
ANKRD11               0.004   ankyrin repeat domain 11 
SLITRK6               0.004   slit and trk like 6 
NUDCD1                0.004   NudC domain containing 1 isoform 2 
NUDCD1                0.004   NudC domain containing 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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