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Search of human proteins with 189458896
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|189458896 postmeiotic segregation 1 isoform b [Homo sapiens]
(893 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|189458896 postmeiotic segregation 1 isoform b [Homo sapiens] 1781 0.0
gi|4505911 postmeiotic segregation 1 isoform a [Homo sapiens] 1762 0.0
gi|189458898 postmeiotic segregation 1 isoform c [Homo sapiens] 1134 0.0
gi|4505913 PMS2 postmeiotic segregation increased 2 isoform a [H... 176 9e-44
gi|239743246 PREDICTED: hypothetical protein XP_002342778 [Homo ... 125 2e-28
gi|169170512 PREDICTED: similar to Postmeiotic segregation incre... 125 2e-28
gi|4557757 MutL protein homolog 1 [Homo sapiens] 121 3e-27
gi|91992162 mutL homolog 3 isoform 1 [Homo sapiens] 93 1e-18
gi|91992160 mutL homolog 3 isoform 2 [Homo sapiens] 93 1e-18
gi|194688135 high-mobility group box 2 [Homo sapiens] 52 2e-06
gi|194688133 high-mobility group box 2 [Homo sapiens] 52 2e-06
gi|11321591 high-mobility group box 2 [Homo sapiens] 52 2e-06
gi|4507241 structure specific recognition protein 1 [Homo sapiens] 51 5e-06
gi|4504425 high-mobility group box 1 [Homo sapiens] 50 9e-06
gi|71143137 high-mobility group box 3 [Homo sapiens] 49 3e-05
gi|4507401 transcription factor A, mitochondrial [Homo sapiens] 48 5e-05
gi|5902112 SRY (sex determining region Y)-box 30 isoform b [Homo... 47 6e-05
gi|30581117 SRY (sex determining region Y)-box 30 isoform a [Hom... 47 6e-05
gi|109715852 chromosome 6 open reading frame 204 isoform a [Homo... 47 8e-05
gi|169184027 PREDICTED: similar to high mobility group box 3 [Ho... 46 1e-04
gi|113421073 PREDICTED: similar to high mobility group box 3 [Ho... 46 1e-04
gi|113420668 PREDICTED: similar to high mobility group box 3 [Ho... 46 1e-04
gi|115529449 upstream binding transcription factor, RNA polymera... 46 1e-04
gi|115529451 upstream binding transcription factor, RNA polymera... 46 1e-04
gi|7657671 upstream binding transcription factor, RNA polymerase... 46 1e-04
gi|51173873 high-mobility group protein 2-like 1 [Homo sapiens] 46 2e-04
gi|169212060 PREDICTED: high mobility group protein B3-like prot... 46 2e-04
gi|239745831 PREDICTED: high mobility group protein B3-like prot... 46 2e-04
gi|56806673 high-mobility group box 1-like 1 [Homo sapiens] 46 2e-04
gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens] 45 2e-04
>gi|189458896 postmeiotic segregation 1 isoform b [Homo sapiens]
Length = 893
Score = 1781 bits (4614), Expect = 0.0
Identities = 893/893 (100%), Positives = 893/893 (100%)
Query: 1 MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEG 60
MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEG
Sbjct: 1 MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEG 60
Query: 61 IKAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQ 120
IKAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQ
Sbjct: 61 IKAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQ 120
Query: 121 YVLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFG 180
YVLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFG
Sbjct: 121 YVLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFG 180
Query: 181 ILKPDLRIVFVHNKIYLSGFLPKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHH 240
ILKPDLRIVFVHNKIYLSGFLPKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHH
Sbjct: 181 ILKPDLRIVFVHNKIYLSGFLPKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHH 240
Query: 241 YNLKCLKESTRLYPVFFLKIDVPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGP 300
YNLKCLKESTRLYPVFFLKIDVPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGP
Sbjct: 241 YNLKCLKESTRLYPVFFLKIDVPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGP 300
Query: 301 LPSTNSYENNKTDVSAADIVLSKTAETDVLFNKVESSGKNYSNVDTSVIPFQNDMHNDES 360
LPSTNSYENNKTDVSAADIVLSKTAETDVLFNKVESSGKNYSNVDTSVIPFQNDMHNDES
Sbjct: 301 LPSTNSYENNKTDVSAADIVLSKTAETDVLFNKVESSGKNYSNVDTSVIPFQNDMHNDES 360
Query: 361 GKNTDDCLNHQISIGDFGYGHCSSEISNIDKNTKNAFQDISMSNVSWENSQTEYSKTCFI 420
GKNTDDCLNHQISIGDFGYGHCSSEISNIDKNTKNAFQDISMSNVSWENSQTEYSKTCFI
Sbjct: 361 GKNTDDCLNHQISIGDFGYGHCSSEISNIDKNTKNAFQDISMSNVSWENSQTEYSKTCFI 420
Query: 421 SSVKHTQSENGNKDHIDESGENEEEAGLENSSEISADEWSRGNILKNSVGENIEPVKILV 480
SSVKHTQSENGNKDHIDESGENEEEAGLENSSEISADEWSRGNILKNSVGENIEPVKILV
Sbjct: 421 SSVKHTQSENGNKDHIDESGENEEEAGLENSSEISADEWSRGNILKNSVGENIEPVKILV 480
Query: 481 PEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSNVIDNKSGKVTAYDLLSNRVIKKPMSASA 540
PEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSNVIDNKSGKVTAYDLLSNRVIKKPMSASA
Sbjct: 481 PEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSNVIDNKSGKVTAYDLLSNRVIKKPMSASA 540
Query: 541 LFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAI 600
LFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAI
Sbjct: 541 LFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAI 600
Query: 601 EQESQMSLKDGRKKIKPTSAWNLAQKHKLKTSLSNQPKLDELLQSQIEKRRSQNIKMVQI 660
EQESQMSLKDGRKKIKPTSAWNLAQKHKLKTSLSNQPKLDELLQSQIEKRRSQNIKMVQI
Sbjct: 601 EQESQMSLKDGRKKIKPTSAWNLAQKHKLKTSLSNQPKLDELLQSQIEKRRSQNIKMVQI 660
Query: 661 PFSMKNLKINFKKQNKVDLEEKDEPCLIHNLRFPDAWLMTSKTEVMLLNPYRVEEALLFK 720
PFSMKNLKINFKKQNKVDLEEKDEPCLIHNLRFPDAWLMTSKTEVMLLNPYRVEEALLFK
Sbjct: 661 PFSMKNLKINFKKQNKVDLEEKDEPCLIHNLRFPDAWLMTSKTEVMLLNPYRVEEALLFK 720
Query: 721 RLLENHKLPAEPLEKPIMLTESLFNGSHYLDVLYKMTADDQRYSGSTYLSDPRLTANGFK 780
RLLENHKLPAEPLEKPIMLTESLFNGSHYLDVLYKMTADDQRYSGSTYLSDPRLTANGFK
Sbjct: 721 RLLENHKLPAEPLEKPIMLTESLFNGSHYLDVLYKMTADDQRYSGSTYLSDPRLTANGFK 780
Query: 781 IKLIPGVSITENYLEIEGMANCLPFYGVADLKEILNAILNRNAKEVYECRPRKVISYLEG 840
IKLIPGVSITENYLEIEGMANCLPFYGVADLKEILNAILNRNAKEVYECRPRKVISYLEG
Sbjct: 781 IKLIPGVSITENYLEIEGMANCLPFYGVADLKEILNAILNRNAKEVYECRPRKVISYLEG 840
Query: 841 EAVRLSRQLPMYLSKEDIQDIIYRMKHQFGNEIKECVHGRPFFHHLTYLPETT 893
EAVRLSRQLPMYLSKEDIQDIIYRMKHQFGNEIKECVHGRPFFHHLTYLPETT
Sbjct: 841 EAVRLSRQLPMYLSKEDIQDIIYRMKHQFGNEIKECVHGRPFFHHLTYLPETT 893
>gi|4505911 postmeiotic segregation 1 isoform a [Homo sapiens]
Length = 932
Score = 1762 bits (4564), Expect = 0.0
Identities = 893/932 (95%), Positives = 893/932 (95%), Gaps = 39/932 (4%)
Query: 1 MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEG 60
MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEG
Sbjct: 1 MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEG 60
Query: 61 IKAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQ 120
IKAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQ
Sbjct: 61 IKAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQ 120
Query: 121 YVLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFG 180
YVLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFG
Sbjct: 121 YVLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFG 180
Query: 181 ILKPDLRIVFVHNK---------------------------------------IYLSGFL 201
ILKPDLRIVFVHNK IYLSGFL
Sbjct: 181 ILKPDLRIVFVHNKAVIWQKSRVSDHKMALMSVLGTAVMNNMESFQYHSEESQIYLSGFL 240
Query: 202 PKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFLKID 261
PKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFLKID
Sbjct: 241 PKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFLKID 300
Query: 262 VPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPLPSTNSYENNKTDVSAADIVL 321
VPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPLPSTNSYENNKTDVSAADIVL
Sbjct: 301 VPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPLPSTNSYENNKTDVSAADIVL 360
Query: 322 SKTAETDVLFNKVESSGKNYSNVDTSVIPFQNDMHNDESGKNTDDCLNHQISIGDFGYGH 381
SKTAETDVLFNKVESSGKNYSNVDTSVIPFQNDMHNDESGKNTDDCLNHQISIGDFGYGH
Sbjct: 361 SKTAETDVLFNKVESSGKNYSNVDTSVIPFQNDMHNDESGKNTDDCLNHQISIGDFGYGH 420
Query: 382 CSSEISNIDKNTKNAFQDISMSNVSWENSQTEYSKTCFISSVKHTQSENGNKDHIDESGE 441
CSSEISNIDKNTKNAFQDISMSNVSWENSQTEYSKTCFISSVKHTQSENGNKDHIDESGE
Sbjct: 421 CSSEISNIDKNTKNAFQDISMSNVSWENSQTEYSKTCFISSVKHTQSENGNKDHIDESGE 480
Query: 442 NEEEAGLENSSEISADEWSRGNILKNSVGENIEPVKILVPEKSLPCKVSNNNYPIPEQMN 501
NEEEAGLENSSEISADEWSRGNILKNSVGENIEPVKILVPEKSLPCKVSNNNYPIPEQMN
Sbjct: 481 NEEEAGLENSSEISADEWSRGNILKNSVGENIEPVKILVPEKSLPCKVSNNNYPIPEQMN 540
Query: 502 LNEDSCNKKSNVIDNKSGKVTAYDLLSNRVIKKPMSASALFVQDHRPQFLIENPKTSLED 561
LNEDSCNKKSNVIDNKSGKVTAYDLLSNRVIKKPMSASALFVQDHRPQFLIENPKTSLED
Sbjct: 541 LNEDSCNKKSNVIDNKSGKVTAYDLLSNRVIKKPMSASALFVQDHRPQFLIENPKTSLED 600
Query: 562 ATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQESQMSLKDGRKKIKPTSAW 621
ATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQESQMSLKDGRKKIKPTSAW
Sbjct: 601 ATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQESQMSLKDGRKKIKPTSAW 660
Query: 622 NLAQKHKLKTSLSNQPKLDELLQSQIEKRRSQNIKMVQIPFSMKNLKINFKKQNKVDLEE 681
NLAQKHKLKTSLSNQPKLDELLQSQIEKRRSQNIKMVQIPFSMKNLKINFKKQNKVDLEE
Sbjct: 661 NLAQKHKLKTSLSNQPKLDELLQSQIEKRRSQNIKMVQIPFSMKNLKINFKKQNKVDLEE 720
Query: 682 KDEPCLIHNLRFPDAWLMTSKTEVMLLNPYRVEEALLFKRLLENHKLPAEPLEKPIMLTE 741
KDEPCLIHNLRFPDAWLMTSKTEVMLLNPYRVEEALLFKRLLENHKLPAEPLEKPIMLTE
Sbjct: 721 KDEPCLIHNLRFPDAWLMTSKTEVMLLNPYRVEEALLFKRLLENHKLPAEPLEKPIMLTE 780
Query: 742 SLFNGSHYLDVLYKMTADDQRYSGSTYLSDPRLTANGFKIKLIPGVSITENYLEIEGMAN 801
SLFNGSHYLDVLYKMTADDQRYSGSTYLSDPRLTANGFKIKLIPGVSITENYLEIEGMAN
Sbjct: 781 SLFNGSHYLDVLYKMTADDQRYSGSTYLSDPRLTANGFKIKLIPGVSITENYLEIEGMAN 840
Query: 802 CLPFYGVADLKEILNAILNRNAKEVYECRPRKVISYLEGEAVRLSRQLPMYLSKEDIQDI 861
CLPFYGVADLKEILNAILNRNAKEVYECRPRKVISYLEGEAVRLSRQLPMYLSKEDIQDI
Sbjct: 841 CLPFYGVADLKEILNAILNRNAKEVYECRPRKVISYLEGEAVRLSRQLPMYLSKEDIQDI 900
Query: 862 IYRMKHQFGNEIKECVHGRPFFHHLTYLPETT 893
IYRMKHQFGNEIKECVHGRPFFHHLTYLPETT
Sbjct: 901 IYRMKHQFGNEIKECVHGRPFFHHLTYLPETT 932
>gi|189458898 postmeiotic segregation 1 isoform c [Homo sapiens]
Length = 770
Score = 1134 bits (2934), Expect = 0.0
Identities = 584/641 (91%), Positives = 586/641 (91%), Gaps = 48/641 (7%)
Query: 1 MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEG 60
MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEG
Sbjct: 1 MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEG 60
Query: 61 IKAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQ 120
IKAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQ
Sbjct: 61 IKAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQ 120
Query: 121 YVLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFG 180
YVLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFG
Sbjct: 121 YVLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFG 180
Query: 181 ILKPDLRIVFVHNK---------------------------------------IYLSGFL 201
ILKPDLRIVFVHNK IYLSGFL
Sbjct: 181 ILKPDLRIVFVHNKAVIWQKSRVSDHKMALMSVLGTAVMNNMESFQYHSEESQIYLSGFL 240
Query: 202 PKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFLKID 261
PKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFLKID
Sbjct: 241 PKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFLKID 300
Query: 262 VPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPLPSTNSYENNKTDVSAADIVL 321
VPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPLPSTNSYENNKTDVSAADIVL
Sbjct: 301 VPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPLPSTNSYENNKTDVSAADIVL 360
Query: 322 SKTAETDVLFNKVESSGKNYSNVDTSVIPFQNDMHNDESGKNTDDCLNHQISIGDFGYGH 381
SKTAETDVLFNKVESSGKNYSNVDTSVIPFQNDMHNDESGKNTDDCLNHQISIGDFGYGH
Sbjct: 361 SKTAETDVLFNKVESSGKNYSNVDTSVIPFQNDMHNDESGKNTDDCLNHQISIGDFGYGH 420
Query: 382 CSSEISNIDKNTKNAFQDISMSNVSWENSQTEYSKTCFISSVKHTQSENGNKDHIDESGE 441
CSSEISNIDKNTKNAFQDISMSNVSWENSQTEYSKTCFISSVKHTQSENGNKDHIDESGE
Sbjct: 421 CSSEISNIDKNTKNAFQDISMSNVSWENSQTEYSKTCFISSVKHTQSENGNKDHIDESGE 480
Query: 442 NEEEAGLENSSEISADEWSRGNILKNSVGENIEPVKILVPEKSLPCKVSNNNYPIPEQMN 501
NEEEAGLENSSEISADEWSRGNILKNSVGENIEPVKILVPEKSLPCKVSNNNYPIPEQMN
Sbjct: 481 NEEEAGLENSSEISADEWSRGNILKNSVGENIEPVKILVPEKSLPCKVSNNNYPIPEQMN 540
Query: 502 LNEDSCNKKSNVIDNKSGKVTAYDLLSNRVIKKPMSASALFVQDHRPQFLIENPKTSLED 561
LNEDSCNKKSNVIDNKSGKVTAYDLLSNRVIKKPMSASALFVQDHRPQFLIENPKTSLED
Sbjct: 541 LNEDSCNKKSNVIDNKSGKVTAYDLLSNRVIKKPMSASALFVQDHRPQFLIENPKTSLED 600
Query: 562 ATLQIEELWKTLSEEEKLKYEE---------KATKDLERYN 593
ATLQIEELWKTLSEEEKL K T D +RY+
Sbjct: 601 ATLQIEELWKTLSEEEKLNLFNGSHYLDVLYKMTADDQRYS 641
Score = 315 bits (808), Expect = 9e-86
Identities = 159/176 (90%), Positives = 162/176 (92%), Gaps = 2/176 (1%)
Query: 720 KRLLENHKLPAEPLEKPIMLTE--SLFNGSHYLDVLYKMTADDQRYSGSTYLSDPRLTAN 777
K LE+ L E L K + E +LFNGSHYLDVLYKMTADDQRYSGSTYLSDPRLTAN
Sbjct: 595 KTSLEDATLQIEELWKTLSEEEKLNLFNGSHYLDVLYKMTADDQRYSGSTYLSDPRLTAN 654
Query: 778 GFKIKLIPGVSITENYLEIEGMANCLPFYGVADLKEILNAILNRNAKEVYECRPRKVISY 837
GFKIKLIPGVSITENYLEIEGMANCLPFYGVADLKEILNAILNRNAKEVYECRPRKVISY
Sbjct: 655 GFKIKLIPGVSITENYLEIEGMANCLPFYGVADLKEILNAILNRNAKEVYECRPRKVISY 714
Query: 838 LEGEAVRLSRQLPMYLSKEDIQDIIYRMKHQFGNEIKECVHGRPFFHHLTYLPETT 893
LEGEAVRLSRQLPMYLSKEDIQDIIYRMKHQFGNEIKECVHGRPFFHHLTYLPETT
Sbjct: 715 LEGEAVRLSRQLPMYLSKEDIQDIIYRMKHQFGNEIKECVHGRPFFHHLTYLPETT 770
>gi|4505913 PMS2 postmeiotic segregation increased 2 isoform a [Homo
sapiens]
Length = 862
Score = 176 bits (446), Expect = 9e-44
Identities = 126/375 (33%), Positives = 193/375 (51%), Gaps = 76/375 (20%)
Query: 1 MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEG 60
+K + +V + S Q++ S+ + VKEL+ENSLDAGAT++D+KL++YG D IEV DNG G
Sbjct: 15 IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 74
Query: 61 IKAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQ 120
++ + + +K++TSKI DL + T+GFRGEAL S+C +++V I+T A+ T+
Sbjct: 75 VEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTR 134
Query: 121 YVLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVR-KQFYSTAKKCKDEIKKIQDL---- 175
+ D +G I+ + P +GTTV+ +LF LPVR K+F KK + K +Q L
Sbjct: 135 LMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKK--EYAKMVQVLHAYC 192
Query: 176 LMSFGI------------------------LKPDLRIVF--------------------- 190
++S GI +K ++ VF
Sbjct: 193 IISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVC 252
Query: 191 ----------VHNKIYLSGFLPKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHH 240
+HN Y+SGF+ +C H ST +R F FIN RP + +L+
Sbjct: 253 EEYGLSCSDALHNLFYISGFISQCT--HGVGRSST-DRQFFFINRRPCDPAKVCRLVNEV 309
Query: 241 YNLKCLKESTRLYPVFFLKIDVPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGP 300
Y++ + YP L I V + VD+N+TPDK Q+LLQ +E +L+A+ L T+ G
Sbjct: 310 YHMY----NRHQYPFVVLNISVDSECVDINVTPDKRQILLQ-EEKLLLAV--LKTSLIGM 362
Query: 301 LPSTNSYENNKTDVS 315
S + NK +VS
Sbjct: 363 FDS----DVNKLNVS 373
Score = 30.4 bits (67), Expect = 7.7
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 5/113 (4%)
Query: 777 NGFKIKLIPGVSITENYLEIEGMANCLPFYGVADLKEILNAILNRNAKEVYECRPRKVIS 836
NGF + +TE I + +G D+ E++ + + CRP +V
Sbjct: 749 NGFDFVIDENAPVTERAKLISLPTSKNWTFGPQDVDELIFMLSDSPG---VMCRPSRVKQ 805
Query: 837 YLEGEAVRLSRQLPMYLSKEDIQDIIYRMKHQFGNEIKECVHGRPFFHHLTYL 889
A R S + L+ +++ +I M + C HGRP H+ L
Sbjct: 806 MFASRACRKSVMIGTALNTSEMKKLITHMGEM--DHPWNCPHGRPTMRHIANL 856
>gi|239743246 PREDICTED: hypothetical protein XP_002342778 [Homo
sapiens]
Length = 255
Score = 125 bits (313), Expect = 2e-28
Identities = 64/165 (38%), Positives = 104/165 (63%), Gaps = 1/165 (0%)
Query: 1 MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEG 60
+K + +V + S ++ S+ + VK+++ NSLDAGAT++D+KL++YG D IEV NG G
Sbjct: 30 IKPIDRKSVHQICSGPVVLSLSTAVKKIVGNSLDAGATNIDLKLKDYGMDLIEVSGNGCG 89
Query: 61 IKAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQ 120
++ + + +K++TSKI DL + T+GF+G+AL S+C +++V I+T + T+
Sbjct: 90 VEEENFEGLTLKHHTSKIREFADLTRVETFGFQGKALSSLCALSDVTISTCHVSAKVGTR 149
Query: 121 YVLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVR-KQFYSTAKK 164
V D G I+ + P +GTTV+ +LF LPVR K+F KK
Sbjct: 150 LVFDHDGKIIQKTPYPHPRGTTVSVKQLFSTLPVRHKEFQRNIKK 194
>gi|169170512 PREDICTED: similar to Postmeiotic segregation
increased 4-like protein [Homo sapiens]
Length = 255
Score = 125 bits (313), Expect = 2e-28
Identities = 64/165 (38%), Positives = 104/165 (63%), Gaps = 1/165 (0%)
Query: 1 MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEG 60
+K + +V + S ++ S+ + VK+++ NSLDAGAT++D+KL++YG D IEV NG G
Sbjct: 30 IKPIDRKSVHQICSGPVVLSLSTAVKKIVGNSLDAGATNIDLKLKDYGMDLIEVSGNGCG 89
Query: 61 IKAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQ 120
++ + + +K++TSKI DL + T+GF+G+AL S+C +++V I+T + T+
Sbjct: 90 VEEENFEGLTLKHHTSKIREFADLTRVETFGFQGKALSSLCALSDVTISTCHVSAKVGTR 149
Query: 121 YVLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVR-KQFYSTAKK 164
V D G I+ + P +GTTV+ +LF LPVR K+F KK
Sbjct: 150 LVFDHDGKIIQKTPYPHPRGTTVSVKQLFSTLPVRHKEFQRNIKK 194
>gi|4557757 MutL protein homolog 1 [Homo sapiens]
Length = 756
Score = 121 bits (304), Expect = 3e-27
Identities = 93/322 (28%), Positives = 154/322 (47%), Gaps = 41/322 (12%)
Query: 1 MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEG 60
+++L V +++ ++I + +KE+IEN LDA +TS+ V ++ G I+++DNG G
Sbjct: 8 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67
Query: 61 IKAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQ 120
I+ D ++ ++ TSK+ S EDL +++TYGFRGEAL SI +A V ITT+TA + +
Sbjct: 68 IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127
Query: 121 YVLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLL---- 176
KP QGT +T LF N+ R++ K +E KI +++
Sbjct: 128 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRK---ALKNPSEEYGKILEVVGRYS 184
Query: 177 -----MSFGILK-----------------PDLRIVF---VHNKIYLSGFLPKCDADHSFT 211
+SF + K ++R +F V ++ G K A
Sbjct: 185 VHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAFKMNG 244
Query: 212 SLSTPERS------FIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFLKIDVPTA 265
+S S +FIN R V + K I Y K + +P +L +++
Sbjct: 245 YISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNT---HPFLYLSLEISPQ 301
Query: 266 DVDVNLTPDKSQVLLQNKESVL 287
+VDVN+ P K +V ++ES+L
Sbjct: 302 NVDVNVHPTKHEVHFLHEESIL 323
>gi|91992162 mutL homolog 3 isoform 1 [Homo sapiens]
Length = 1453
Score = 92.8 bits (229), Expect = 1e-18
Identities = 131/565 (23%), Positives = 212/565 (37%), Gaps = 132/565 (23%)
Query: 12 LSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEGIKAVDAPVMAM 71
L S I+S+ V+EL NS+DA A V V++ F +++V DNG G+ + D +
Sbjct: 13 LRSGLAISSLGQCVEELALNSIDAEAKCVAVRVNMETF-QVQVIDNGFGMGSDDVEKVGN 71
Query: 72 KYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQYVLDGSGHIL- 130
+Y+TSK +S +DLEN YGFRGEAL +I +A + + T L SG L
Sbjct: 72 RYFTSKCHSVQDLENPRFYGFRGEALANIADMASAVEISSKKNRTMKTFVKLFQSGKALK 131
Query: 131 --SQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKD---EIKKIQDLLMSFGILKPD 185
+ GTTVT LF LPVR +KC D E +K++ + + ++ P
Sbjct: 132 ACEADVTRASAGTTVTVYNLFYQLPVR-------RKCMDPRLEFEKVRQRIEALSLMHPS 184
Query: 186 L---------------------------------------RIVFVHNKIYLSGFLPKCDA 206
+ I F + + LSG++
Sbjct: 185 ISFSLRNDVSGSMVLQLPKTKDVCSRFCQIYGLGKSQKLREISFKYKEFELSGYI----- 239
Query: 207 DHSFTSLSTPERSFIFINSRPVHQKDILKLI------------------RHHYNLKCLKE 248
S + F+F+N R V + + KLI N
Sbjct: 240 --SSEAHYNKNMQFLFVNKRLVLRTKLHKLIDFLLRKESIICKPKNGPTSRQMNSSLRHR 297
Query: 249 ST-RLYPVFFLKIDVPTADVDVNLTPDKSQVLLQNKESVLIAL----------ENLMTTC 297
ST LY ++ + + + DV + P K+ + QN +++L + E L
Sbjct: 298 STPELYGIYVINVQCQFCEYDVCMEPAKTLIEFQNWDTLLFCIQEGVKMFLKQEKLFVEL 357
Query: 298 YGPLPSTNSYENNKTDVSAADIVLSKTAETD----------------VLFNKVESSGKNY 341
G S +N S D L K +D +FN + K
Sbjct: 358 SGEDIKEFSEDNG---FSLFDATLQKRVTSDERSNFQEACNNILDSYEMFNLQSKAVKRK 414
Query: 342 SNVDTSVIPFQNDMHNDESGKNTDDCLNHQISIGDFGYGHCSS-EISNIDKNTKNAFQDI 400
+ + + Q+ ++ + KNT+D + G G+ + + N D + +
Sbjct: 415 TTAEN--VNTQSSRDSEATRKNTNDAFLYIYESGGPGHSKMTEPSLQNKDSSCSESKMLE 472
Query: 401 SMSNVSWENSQTEYSKTCFISSVKHTQSEN-------------GNKDHIDESGENEEEAG 447
+ V+ E + E K F+ +H+ EN H +ESG++
Sbjct: 473 QETIVASEAGENEKHKKSFL---EHSSLENPCGTSLEMFLSPFQTPCHFEESGQD----- 524
Query: 448 LENSSEISADEWSRGNILKNSVGEN 472
LE E + NILKN+ +N
Sbjct: 525 LEIWKESTTVNGMAANILKNNRIQN 549
>gi|91992160 mutL homolog 3 isoform 2 [Homo sapiens]
Length = 1429
Score = 92.8 bits (229), Expect = 1e-18
Identities = 131/565 (23%), Positives = 212/565 (37%), Gaps = 132/565 (23%)
Query: 12 LSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEGIKAVDAPVMAM 71
L S I+S+ V+EL NS+DA A V V++ F +++V DNG G+ + D +
Sbjct: 13 LRSGLAISSLGQCVEELALNSIDAEAKCVAVRVNMETF-QVQVIDNGFGMGSDDVEKVGN 71
Query: 72 KYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQYVLDGSGHIL- 130
+Y+TSK +S +DLEN YGFRGEAL +I +A + + T L SG L
Sbjct: 72 RYFTSKCHSVQDLENPRFYGFRGEALANIADMASAVEISSKKNRTMKTFVKLFQSGKALK 131
Query: 131 --SQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKD---EIKKIQDLLMSFGILKPD 185
+ GTTVT LF LPVR +KC D E +K++ + + ++ P
Sbjct: 132 ACEADVTRASAGTTVTVYNLFYQLPVR-------RKCMDPRLEFEKVRQRIEALSLMHPS 184
Query: 186 L---------------------------------------RIVFVHNKIYLSGFLPKCDA 206
+ I F + + LSG++
Sbjct: 185 ISFSLRNDVSGSMVLQLPKTKDVCSRFCQIYGLGKSQKLREISFKYKEFELSGYI----- 239
Query: 207 DHSFTSLSTPERSFIFINSRPVHQKDILKLI------------------RHHYNLKCLKE 248
S + F+F+N R V + + KLI N
Sbjct: 240 --SSEAHYNKNMQFLFVNKRLVLRTKLHKLIDFLLRKESIICKPKNGPTSRQMNSSLRHR 297
Query: 249 ST-RLYPVFFLKIDVPTADVDVNLTPDKSQVLLQNKESVLIAL----------ENLMTTC 297
ST LY ++ + + + DV + P K+ + QN +++L + E L
Sbjct: 298 STPELYGIYVINVQCQFCEYDVCMEPAKTLIEFQNWDTLLFCIQEGVKMFLKQEKLFVEL 357
Query: 298 YGPLPSTNSYENNKTDVSAADIVLSKTAETD----------------VLFNKVESSGKNY 341
G S +N S D L K +D +FN + K
Sbjct: 358 SGEDIKEFSEDNG---FSLFDATLQKRVTSDERSNFQEACNNILDSYEMFNLQSKAVKRK 414
Query: 342 SNVDTSVIPFQNDMHNDESGKNTDDCLNHQISIGDFGYGHCSS-EISNIDKNTKNAFQDI 400
+ + + Q+ ++ + KNT+D + G G+ + + N D + +
Sbjct: 415 TTAEN--VNTQSSRDSEATRKNTNDAFLYIYESGGPGHSKMTEPSLQNKDSSCSESKMLE 472
Query: 401 SMSNVSWENSQTEYSKTCFISSVKHTQSEN-------------GNKDHIDESGENEEEAG 447
+ V+ E + E K F+ +H+ EN H +ESG++
Sbjct: 473 QETIVASEAGENEKHKKSFL---EHSSLENPCGTSLEMFLSPFQTPCHFEESGQD----- 524
Query: 448 LENSSEISADEWSRGNILKNSVGEN 472
LE E + NILKN+ +N
Sbjct: 525 LEIWKESTTVNGMAANILKNNRIQN 549
>gi|194688135 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 52.0 bits (123), Expect = 2e-06
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 533 KKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERY 592
K+P SA LF +HRP+ E+P S+ D ++ E+W S ++K YE+KA K E+Y
Sbjct: 96 KRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKY 155
Query: 593 NSQM 596
+
Sbjct: 156 EKDI 159
Score = 49.7 bits (117), Expect = 1e-05
Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 9/149 (6%)
Query: 536 MSASALFVQDHRPQFLIENPKTSLEDATL--QIEELWKTLSEEEKLKYEEKATKDLERYN 593
MS+ A FVQ R + ++P +S+ A + E WKT+S +EK K+E+ A D RY+
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYD 72
Query: 594 SQMKRAI--EQESQMSLKDGRKKIKPTSAWNL-AQKHKLKTSLSNQPKLD--ELLQSQIE 648
+MK + + + + KD +P SA+ L +H+ K S P L + + E
Sbjct: 73 REMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIK-SEHPGLSIGDTAKKLGE 131
Query: 649 KRRSQNIKMVQIPFSMKNLKINFKKQNKV 677
Q+ K Q P+ K K+ K + +
Sbjct: 132 MWSEQSAKDKQ-PYEQKAAKLKEKYEKDI 159
>gi|194688133 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 52.0 bits (123), Expect = 2e-06
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 533 KKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERY 592
K+P SA LF +HRP+ E+P S+ D ++ E+W S ++K YE+KA K E+Y
Sbjct: 96 KRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKY 155
Query: 593 NSQM 596
+
Sbjct: 156 EKDI 159
Score = 49.7 bits (117), Expect = 1e-05
Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 9/149 (6%)
Query: 536 MSASALFVQDHRPQFLIENPKTSLEDATL--QIEELWKTLSEEEKLKYEEKATKDLERYN 593
MS+ A FVQ R + ++P +S+ A + E WKT+S +EK K+E+ A D RY+
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYD 72
Query: 594 SQMKRAI--EQESQMSLKDGRKKIKPTSAWNL-AQKHKLKTSLSNQPKLD--ELLQSQIE 648
+MK + + + + KD +P SA+ L +H+ K S P L + + E
Sbjct: 73 REMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIK-SEHPGLSIGDTAKKLGE 131
Query: 649 KRRSQNIKMVQIPFSMKNLKINFKKQNKV 677
Q+ K Q P+ K K+ K + +
Sbjct: 132 MWSEQSAKDKQ-PYEQKAAKLKEKYEKDI 159
>gi|11321591 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 52.0 bits (123), Expect = 2e-06
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 533 KKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERY 592
K+P SA LF +HRP+ E+P S+ D ++ E+W S ++K YE+KA K E+Y
Sbjct: 96 KRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKY 155
Query: 593 NSQM 596
+
Sbjct: 156 EKDI 159
Score = 49.7 bits (117), Expect = 1e-05
Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 9/149 (6%)
Query: 536 MSASALFVQDHRPQFLIENPKTSLEDATL--QIEELWKTLSEEEKLKYEEKATKDLERYN 593
MS+ A FVQ R + ++P +S+ A + E WKT+S +EK K+E+ A D RY+
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYD 72
Query: 594 SQMKRAI--EQESQMSLKDGRKKIKPTSAWNL-AQKHKLKTSLSNQPKLD--ELLQSQIE 648
+MK + + + + KD +P SA+ L +H+ K S P L + + E
Sbjct: 73 REMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIK-SEHPGLSIGDTAKKLGE 131
Query: 649 KRRSQNIKMVQIPFSMKNLKINFKKQNKV 677
Q+ K Q P+ K K+ K + +
Sbjct: 132 MWSEQSAKDKQ-PYEQKAAKLKEKYEKDI 159
>gi|4507241 structure specific recognition protein 1 [Homo sapiens]
Length = 709
Score = 50.8 bits (120), Expect = 5e-06
Identities = 70/320 (21%), Positives = 125/320 (39%), Gaps = 41/320 (12%)
Query: 371 QISIGDFGYGHCSSEISNIDKNTKNAFQDISMSNVSWENSQTEYSKTC-FISSVKHTQSE 429
+IS +F G ++ + + TK Q + S++ E EY K F+++ K
Sbjct: 373 EISFVNFARGTTTTRSFDFEIETKQGTQ-YTFSSIERE----EYGKLFDFVNAKKLNIKN 427
Query: 430 NGNK-------DHIDESGENEEEAGLENSSEISADEWSRGNILKNSVGENIEPVKILVPE 482
G K D +S E++ +A LE E N + GE + E
Sbjct: 428 RGLKEGMNPSYDEYADSDEDQHDAYLERMKEEGKIREENANDSSDDSGEETDESFNPGEE 487
Query: 483 KSLPCKVSNNNYPIPEQMNLNEDSCNKKSN--------VIDNKSGK--VTAYDLLSNRVI 532
+ + ++N N + ++K D KS K V
Sbjct: 488 EEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAP 547
Query: 533 KKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERY 592
K+PMSA L++ R + ++P S+ D + + E+WK +S+E+K +++ KA Y
Sbjct: 548 KRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDY 607
Query: 593 NSQMKRAIEQESQMSLKDGRKKIK------------------PTSAWNLAQKHKLKTSLS 634
MK + S +D KK K +S+ L++ K K +S
Sbjct: 608 EKAMKEYEGGRGESSKRDKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVS 667
Query: 635 NQPKLDELLQSQIEKRRSQN 654
+ +S+ ++RRS++
Sbjct: 668 SDESSSGENKSKKKRRRSED 687
>gi|4504425 high-mobility group box 1 [Homo sapiens]
Length = 215
Score = 50.1 bits (118), Expect = 9e-06
Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
Query: 533 KKP---MSASALFVQDHRPQFLIENPKTSLE--DATLQIEELWKTLSEEEKLKYEEKATK 587
KKP MS+ A FVQ R + ++P S+ + + + E WKT+S +EK K+E+ A
Sbjct: 7 KKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKA 66
Query: 588 DLERYNSQMKRAI--EQESQMSLKDGRKKIKPTSAWNL 623
D RY +MK I + E++ KD +P SA+ L
Sbjct: 67 DKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFL 104
Score = 48.5 bits (114), Expect = 3e-05
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 533 KKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERY 592
K+P SA LF ++RP+ E+P S+ D ++ E+W + ++K YE+KA K E+Y
Sbjct: 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
Query: 593 NSQM 596
+
Sbjct: 156 EKDI 159
>gi|71143137 high-mobility group box 3 [Homo sapiens]
Length = 200
Score = 48.5 bits (114), Expect = 3e-05
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 533 KKP---MSASALFVQDHRPQFLIENPKTSLEDATL--QIEELWKTLSEEEKLKYEEKATK 587
KKP MSA A FVQ R + +NP+ + A + E WKT+S +EK K++E A
Sbjct: 7 KKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKA 66
Query: 588 DLERYNSQMKRAIEQESQMSLKDGRKKIKPTSAWNL 623
D RY+ +MK + KD +P S + L
Sbjct: 67 DKVRYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFL 102
Score = 45.8 bits (107), Expect = 2e-04
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 533 KKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERY 592
K+P S LF + RP+ NP S+ D ++ E+W L++ EK Y KA K E+Y
Sbjct: 94 KRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKY 153
Query: 593 NSQM 596
+
Sbjct: 154 EKDV 157
>gi|4507401 transcription factor A, mitochondrial [Homo sapiens]
Length = 246
Score = 47.8 bits (112), Expect = 5e-05
Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 5/163 (3%)
Query: 533 KKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERY 592
KKP+S+ F ++ P F +NP + +I + W+ L + +K Y++ + + Y
Sbjct: 51 KKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVY 110
Query: 593 NSQMKRAIEQESQMSLKDGRKKIKPTSAWNLAQKHKLKTSLSNQPKLDELLQSQIEKRRS 652
++ R EQ + + K+I A K + +L +PK + R
Sbjct: 111 KEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERF 170
Query: 653 QNIKMVQIPFSMKNLKINFKKQNKVDLE-----EKDEPCLIHN 690
Q K +K +K N+K + + E K++ HN
Sbjct: 171 QEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHN 213
Score = 43.1 bits (100), Expect = 0.001
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 533 KKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERY 592
K+P SA ++V + + ++P+ L+ ++E WK LS+ EK Y + A +D RY
Sbjct: 156 KRPRSAYNVYVAERFQEAKGDSPQEKLKT----VKENWKNLSDSEKELYIQHAKEDETRY 211
Query: 593 NSQMKRAIEQESQMSLKD 610
+++MK EQ ++ KD
Sbjct: 212 HNEMKSWEEQMIEVGRKD 229
>gi|5902112 SRY (sex determining region Y)-box 30 isoform b [Homo
sapiens]
Length = 501
Score = 47.4 bits (111), Expect = 6e-05
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 529 NRVIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKD 588
N +K+PM+A ++ + HRP NP + + ++Q+ W LSEE+K Y ++A K
Sbjct: 334 NGHVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKI 393
Query: 589 LERYNSQMKRAIEQESQMSLKDGRKKIKPTSAWNL 623
E++ + + Q + G++K P S N+
Sbjct: 394 KEKHREEFPGWVYQP-----RPGKRKRFPLSVSNV 423
>gi|30581117 SRY (sex determining region Y)-box 30 isoform a [Homo
sapiens]
Length = 753
Score = 47.4 bits (111), Expect = 6e-05
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 529 NRVIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKD 588
N +K+PM+A ++ + HRP NP + + ++Q+ W LSEE+K Y ++A K
Sbjct: 334 NGHVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKI 393
Query: 589 LERYNSQMKRAIEQESQMSLKDGRKKIKPTSAWNL 623
E++ + + Q + G++K P S N+
Sbjct: 394 KEKHREEFPGWVYQP-----RPGKRKRFPLSVSNV 423
>gi|109715852 chromosome 6 open reading frame 204 isoform a [Homo
sapiens]
Length = 805
Score = 47.0 bits (110), Expect = 8e-05
Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 41/191 (21%)
Query: 529 NRVIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWK---TLSEEEKLKYEEKA 585
N ++ P S ++ H Q E S E LQ+ E K +L EEK K EEK
Sbjct: 424 NTSLQTPFSEESV---SHSQQGEFEQKLASTEKEVLQLNEFLKQRLSLFSEEKKKLEEKL 480
Query: 586 TKDLERYNSQMKRAIEQESQMSLKDGRKKIKPTSAWNLAQKHKLKTSLSNQPKLDEL--- 642
K +RY S +K+ ++ES+ + K+ +++I+ L+ L++ P LD++
Sbjct: 481 -KTRDRYISSLKKKCQKESEQN-KEKQRRIE-----------TLEKYLADLPTLDDVQSQ 527
Query: 643 -LQSQIEKRRSQNIKMVQIPFSMKNLKINFKKQNK------------------VDLEEKD 683
LQ QI + +++N++ I K +I + Q+K L++K
Sbjct: 528 SLQLQILEEKNKNLQEALIDTEKKLEEIKKQCQDKETQLICQKKKEKELVTTVQSLQQKV 587
Query: 684 EPCLIHNLRFP 694
E CL +R P
Sbjct: 588 ERCLEDGIRLP 598
>gi|169184027 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 46.2 bits (108), Expect = 1e-04
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 533 KKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERY 592
K+P S LF + RP+ NP S+ D ++ E+W L++ EK Y KA K E+Y
Sbjct: 93 KRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYVTKAAKLKEKY 152
Query: 593 NSQM 596
+
Sbjct: 153 EKDV 156
Score = 34.3 bits (77), Expect = 0.53
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 533 KKP---MSASALFVQDHRPQFLIENPKTSLEDATL--QIEELWKTLSEEEKLKYEEKATK 587
KKP MSA A VQ + +NP+ + A + WKT+S +EK K+ E A
Sbjct: 7 KKPQGKMSAYAFSVQTCCKEHKKKNPEVLVNFAEFSKKCSGRWKTMSSKEKFKFGEMAKA 66
Query: 588 DLERYNSQMK 597
D Y+ +MK
Sbjct: 67 DEVCYDREMK 76
>gi|113421073 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 46.2 bits (108), Expect = 1e-04
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 533 KKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERY 592
K+P S LF + RP+ NP S+ D ++ E+W L++ EK Y KA K E+Y
Sbjct: 93 KRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYVTKAAKLKEKY 152
Query: 593 NSQM 596
+
Sbjct: 153 EKDV 156
Score = 34.7 bits (78), Expect = 0.41
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 533 KKP---MSASALFVQDHRPQFLIENPKTSLEDATL--QIEELWKTLSEEEKLKYEEKATK 587
KKP MSA A VQ + +NP+ + A + WKT+S +EK K+ E A
Sbjct: 7 KKPQGKMSAYAFSVQTCCKEHKKKNPEVPVNFAEFSKKCSGRWKTMSSKEKFKFGEMAKA 66
Query: 588 DLERYNSQMK 597
D Y+ +MK
Sbjct: 67 DEVCYDREMK 76
>gi|113420668 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 46.2 bits (108), Expect = 1e-04
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 533 KKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERY 592
K+P S LF + RP+ NP S+ D ++ E+W L++ EK Y KA K E+Y
Sbjct: 93 KRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYVTKAAKLKEKY 152
Query: 593 NSQM 596
+
Sbjct: 153 EKDV 156
Score = 34.7 bits (78), Expect = 0.41
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 533 KKP---MSASALFVQDHRPQFLIENPKTSLEDATL--QIEELWKTLSEEEKLKYEEKATK 587
KKP MSA A VQ + +NP+ + A + WKT+S +EK K+ E A
Sbjct: 7 KKPQGKMSAYAFSVQTCCKEHKKKNPEVPVNFAEFSKKCSGRWKTMSSKEKFKFGEMAKA 66
Query: 588 DLERYNSQMK 597
D Y+ +MK
Sbjct: 67 DEVCYDREMK 76
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 46.2 bits (108), Expect = 1e-04
Identities = 55/262 (20%), Positives = 110/262 (41%), Gaps = 37/262 (14%)
Query: 533 KKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERY 592
K+P+SA +F ++ R Q E P+ S + T + +W LSE++K KY KA + +
Sbjct: 371 KRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKY--KAREAALKA 428
Query: 593 NSQMKRAIEQESQMSLKDGRKKIKPTSAWNLAQKH-------------KLKTSLSNQPKL 639
S+ K E+E + L + K+ + ++ + ++ + +N K
Sbjct: 429 QSERKPGGEREERGKLPESPKRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKK 488
Query: 640 DELL----QSQIEKRRSQNIKMVQIPFSMKNLKINFKKQNKVDLEEKDEPCLIHNLRFPD 695
++L+ ++ +KR + + ++ P + N K Q E +P + +F
Sbjct: 489 EKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQG-----EPKKPPMNGYQKFSQ 543
Query: 696 AWLMTSKTEVMLLNPYRVEEALLFKRL----LENHKLPAEPLEKPIMLTESLFNGSHYLD 751
L + + L VE ++R+ E++K AE +K + +LD
Sbjct: 544 ELLSNGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQKQYKV---------HLD 594
Query: 752 VLYKMTADDQRYSGSTYLSDPR 773
+ K + R + Y+S+ R
Sbjct: 595 LWVKSLSPQDRAAYKEYISNKR 616
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 46.2 bits (108), Expect = 1e-04
Identities = 55/262 (20%), Positives = 110/262 (41%), Gaps = 37/262 (14%)
Query: 533 KKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERY 592
K+P+SA +F ++ R Q E P+ S + T + +W LSE++K KY KA + +
Sbjct: 371 KRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKY--KAREAALKA 428
Query: 593 NSQMKRAIEQESQMSLKDGRKKIKPTSAWNLAQKH-------------KLKTSLSNQPKL 639
S+ K E+E + L + K+ + ++ + ++ + +N K
Sbjct: 429 QSERKPGGEREERGKLPESPKRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKK 488
Query: 640 DELL----QSQIEKRRSQNIKMVQIPFSMKNLKINFKKQNKVDLEEKDEPCLIHNLRFPD 695
++L+ ++ +KR + + ++ P + N K Q E +P + +F
Sbjct: 489 EKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQG-----EPKKPPMNGYQKFSQ 543
Query: 696 AWLMTSKTEVMLLNPYRVEEALLFKRL----LENHKLPAEPLEKPIMLTESLFNGSHYLD 751
L + + L VE ++R+ E++K AE +K + +LD
Sbjct: 544 ELLSNGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQKQYKV---------HLD 594
Query: 752 VLYKMTADDQRYSGSTYLSDPR 773
+ K + R + Y+S+ R
Sbjct: 595 LWVKSLSPQDRAAYKEYISNKR 616
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 46.2 bits (108), Expect = 1e-04
Identities = 55/262 (20%), Positives = 110/262 (41%), Gaps = 37/262 (14%)
Query: 533 KKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERY 592
K+P+SA +F ++ R Q E P+ S + T + +W LSE++K KY KA + +
Sbjct: 408 KRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKY--KAREAALKA 465
Query: 593 NSQMKRAIEQESQMSLKDGRKKIKPTSAWNLAQKH-------------KLKTSLSNQPKL 639
S+ K E+E + L + K+ + ++ + ++ + +N K
Sbjct: 466 QSERKPGGEREERGKLPESPKRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKK 525
Query: 640 DELL----QSQIEKRRSQNIKMVQIPFSMKNLKINFKKQNKVDLEEKDEPCLIHNLRFPD 695
++L+ ++ +KR + + ++ P + N K Q E +P + +F
Sbjct: 526 EKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQG-----EPKKPPMNGYQKFSQ 580
Query: 696 AWLMTSKTEVMLLNPYRVEEALLFKRL----LENHKLPAEPLEKPIMLTESLFNGSHYLD 751
L + + L VE ++R+ E++K AE +K + +LD
Sbjct: 581 ELLSNGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQKQYKV---------HLD 631
Query: 752 VLYKMTADDQRYSGSTYLSDPR 773
+ K + R + Y+S+ R
Sbjct: 632 LWVKSLSPQDRAAYKEYISNKR 653
>gi|51173873 high-mobility group protein 2-like 1 [Homo sapiens]
Length = 601
Score = 45.8 bits (107), Expect = 2e-04
Identities = 25/96 (26%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 533 KKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERY 592
KK MSA +F +++R + ++P + + ++ E+WK L E++KL +++KA +
Sbjct: 408 KKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQLPEKDKLIWKQKAQYLQHKQ 467
Query: 593 NSQMKRAIEQESQMSLKDGRKKIKPTSAWNLAQKHK 628
N +++++ S +G K+K +S L+ + K
Sbjct: 468 NKAEATTVKRKASSS--EGSMKVKASSVGVLSPQKK 501
>gi|169212060 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 45.8 bits (107), Expect = 2e-04
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 533 KKP---MSASALFVQDHRPQFLIENPKTSLEDATL--QIEELWKTLSEEEKLKYEEKATK 587
KKP MSA A FVQ R + +NPK + A + E WKT+S++EK K+ E A
Sbjct: 7 KKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAKA 66
Query: 588 DLERYNSQMK 597
D Y+ ++K
Sbjct: 67 DKVHYDQEIK 76
Score = 40.4 bits (93), Expect = 0.007
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 533 KKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERY 592
K+P S LF + P+ NP + D ++ E+WK L++ EK Y +A K E+Y
Sbjct: 93 KRPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKY 152
Query: 593 NSQM 596
+
Sbjct: 153 EKDV 156
>gi|239745831 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 45.8 bits (107), Expect = 2e-04
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 533 KKP---MSASALFVQDHRPQFLIENPKTSLEDATL--QIEELWKTLSEEEKLKYEEKATK 587
KKP MSA A FVQ R + +NPK + A + E WKT+S++EK K+ E A
Sbjct: 7 KKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAKA 66
Query: 588 DLERYNSQMK 597
D Y+ ++K
Sbjct: 67 DKVHYDQEIK 76
Score = 40.4 bits (93), Expect = 0.007
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 533 KKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERY 592
K+P S LF + P+ NP + D ++ E+WK L++ EK Y +A K E+Y
Sbjct: 93 KRPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKY 152
Query: 593 NSQM 596
+
Sbjct: 153 EKDV 156
>gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]
Length = 211
Score = 45.8 bits (107), Expect = 2e-04
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 533 KKP---MSASALFVQDHRPQFLIENPKTSLE--DATLQIEELWKTLSEEEKLKYEEKATK 587
KKP MS+ A FVQ R + ++ S+ + + + E WKT+S +EK K+E+ A
Sbjct: 7 KKPRGKMSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKFEDMAKA 66
Query: 588 DLERYNSQMKRAI--EQESQMSLKDGRKKIKPTSAWNL 623
D Y QMK I + E++ KD +P SA+ L
Sbjct: 67 DKTHYERQMKTYIPPKGETKKKFKDPNAPKRPPSAFFL 104
Score = 42.7 bits (99), Expect = 0.001
Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 533 KKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERY 592
K+P SA LF ++ P+ E+P S+ D ++ E+W + ++K E+KA K E+Y
Sbjct: 96 KRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPGEKKAAKLKEKY 155
Query: 593 NSQM 596
+
Sbjct: 156 EKDI 159
>gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]
Length = 879
Score = 45.4 bits (106), Expect = 2e-04
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 533 KKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERY 592
K+P A LF ++RP+ E+P S++D ++ +W + +K YE+KA K E+Y
Sbjct: 770 KRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAADKQFYEKKAAKLKEKY 829
Query: 593 -------------NSQMKRAIEQESQMSLKD 610
NS KR ++ E K+
Sbjct: 830 KKDIAAYRAKGKPNSAKKRVVKAEKSKKKKE 860
Score = 40.8 bits (94), Expect = 0.006
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 12/139 (8%)
Query: 497 PEQMNLNEDSCNKKSNVIDNKSGKVTAYDLLSNRVIKKPMSASALFVQDHRPQFLIE--- 553
P + + D K+ + + G T L+ N+ + +P S + + L++
Sbjct: 640 PREFEIEGDRGASKNWKLSIRCGGYTLKVLMENKFLPEPPSTRKKRILESHNNTLVDPCE 699
Query: 554 -----NPKTSLEDATL--QIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAI--EQES 604
NP S++ + + E WKT+ +EK K+E+ A D Y +MK I + E
Sbjct: 700 EHKKKNPDASVKFSEFLKKCSETWKTIFAKEKGKFEDMAKADKAHYEREMKTYIPPKGEK 759
Query: 605 QMSLKDGRKKIKPTSAWNL 623
+ KD +P A+ L
Sbjct: 760 KKKFKDPNAPKRPPLAFFL 778
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,153,145
Number of Sequences: 37866
Number of extensions: 1431475
Number of successful extensions: 4962
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 213
Number of HSP's that attempted gapping in prelim test: 4380
Number of HSP's gapped (non-prelim): 684
length of query: 893
length of database: 18,247,518
effective HSP length: 111
effective length of query: 782
effective length of database: 14,044,392
effective search space: 10982714544
effective search space used: 10982714544
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.