Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CDC23 Sequence: fasta or formatted (597aa) NCBI GI: 118402596
Description:

cell division cycle protein 23

Referenced in:

Anaphase-promoting Complex
Additional Cell Cycle Functions
Tetratricopeptide Domains

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         56           2
 C cysteine            2.3         14           2
 D aspartate           4.5         27           2
 E glutamate           8.0         48           2
 F phenylalanine       3.4         20           2
 G glycine             3.5         21           1
 H histidine           2.5         15           1
 I isoleucine          4.2         25           1
 K lysine              6.9         41           3
 L leucine            12.9         77           3
 M methionine          2.3         14           1
 N asparagine          3.5         21           2
 P proline             3.7         22           4
 Q glutamine           4.2         25           1
 R arginine            5.2         31           2
 S serine              6.2         37           2
 T threonine           4.2         25           2
 V valine              5.2         31           2
 W tryptophan          1.3          8           1
 Y tyrosine            6.5         39           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cell division cycle protein 23 
CDC27                 0.083   cell division cycle protein 27 isoform 1 
CDC27                 0.083   cell division cycle protein 27 isoform 2 
TMTC1                 0.034   transmembrane and tetratricopeptide repeat containin...
CDC16                 0.031   anaphase-promoting complex, subunit 6 
CDC16                 0.031   anaphase-promoting complex, subunit 6 
IFT88                 0.029   intraflagellar transport 88 homolog isoform 1 
IFT88                 0.029   intraflagellar transport 88 homolog isoform 2 
KDM6A                 0.025   ubiquitously transcribed tetratricopeptide repeat, ...
UTY                   0.025   tetratricopeptide repeat protein isoform 3 
UTY                   0.025   tetratricopeptide repeat protein isoform 1 
UTY                   0.025   tetratricopeptide repeat protein isoform 2 
OGT                   0.024   O-linked GlcNAc transferase isoform 2 
OGT                   0.024   O-linked GlcNAc transferase isoform 1 
TTC27                 0.020   tetratricopeptide repeat domain 27 
TMTC4                 0.019   transmembrane and tetratricopeptide repeat containi...
TMTC4                 0.019   transmembrane and tetratricopeptide repeat containi...
ANAPC7                0.018   anaphase-promoting complex subunit 7 isoform b [Hom...
ANAPC7                0.018   anaphase-promoting complex subunit 7 isoform a [Hom...
TTC37                 0.016   tetratricopeptide repeat domain 37 
TTC6                  0.016   PREDICTED: tetratricopeptide repeat domain 6 
TTC6                  0.016   PREDICTED: tetratricopeptide repeat domain 6 
TMTC3                 0.015   transmembrane and tetratricopeptide repeat containi...
C14orf25              0.014   PREDICTED: chromosome 14 open reading frame 25 [Hom...
TMTC2                 0.014   transmembrane and tetratricopeptide repeat containin...
PEX5                  0.013   peroxisomal biogenesis factor 5 isoform d 
PEX5                  0.013   peroxisomal biogenesis factor 5 isoform d 
PEX5                  0.013   peroxisomal biogenesis factor 5 isoform c 
PEX5                  0.013   peroxisomal biogenesis factor 5 isoform a 
PEX5                  0.013   peroxisomal biogenesis factor 5 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press