Guide to the Human Genome
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Name: TMTC4 Sequence: fasta or formatted (760aa) NCBI GI: 118766330
Description:

transmembrane and tetratricopeptide repeat containing 4 isoform 1

Referenced in:

Tetratricopeptide Domains

Other entries for this name:
alt prot [741aa] transmembrane and tetratricopeptide repeat containing 4 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         71           3
 C cysteine            2.0         15           1
 D aspartate           3.7         28           2
 E glutamate           4.1         31           2
 F phenylalanine       5.0         38           2
 G glycine             6.8         52           2
 H histidine           3.4         26           2
 I isoleucine          4.6         35           2
 K lysine              5.0         38           4
 L leucine            14.9        113           3
 M methionine          2.0         15           1
 N asparagine          5.7         43           2
 P proline             3.4         26           2
 Q glutamine           2.4         18           1
 R arginine            5.1         39           2
 S serine              6.4         49           2
 T threonine           3.0         23           1
 V valine              7.5         57           2
 W tryptophan          2.1         16           2
 Y tyrosine            3.6         27           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane and tetratricopeptide repeat containi... 
TMTC4                 0.974   transmembrane and tetratricopeptide repeat containi...
TMTC3                 0.243   transmembrane and tetratricopeptide repeat containi...
TMTC2                 0.233   transmembrane and tetratricopeptide repeat containin...
TMTC1                 0.187   transmembrane and tetratricopeptide repeat containin...
OGT                   0.058   O-linked GlcNAc transferase isoform 2 
OGT                   0.058   O-linked GlcNAc transferase isoform 1 
TTC6                  0.030   PREDICTED: tetratricopeptide repeat domain 6 
TTC6                  0.030   PREDICTED: tetratricopeptide repeat domain 6 
C14orf25              0.030   PREDICTED: chromosome 14 open reading frame 25 [Hom...
CDC27                 0.022   cell division cycle protein 27 isoform 1 
CDC27                 0.022   cell division cycle protein 27 isoform 2 
TTC8                  0.021   tetratricopeptide repeat domain 8 isoform A 
TTC8                  0.021   tetratricopeptide repeat domain 8 isoform C 
TTC8                  0.021   tetratricopeptide repeat domain 8 isoform B 
BBS4                  0.020   Bardet-Biedl syndrome 4 
TTC7A                 0.018   tetratricopeptide repeat domain 7A 
TTC7B                 0.017   tetratricopeptide repeat domain 7B 
TTC27                 0.016   tetratricopeptide repeat domain 27 
NPHP3                 0.015   nephrocystin 3 
UTY                   0.015   tetratricopeptide repeat protein isoform 3 
UTY                   0.015   tetratricopeptide repeat protein isoform 1 
UTY                   0.015   tetratricopeptide repeat protein isoform 2 
CDC23                 0.015   cell division cycle protein 23 
CTR9                  0.015   SH2 domain binding protein 1 
STIP1                 0.014   stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi...
KDM6A                 0.014   ubiquitously transcribed tetratricopeptide repeat, ...
KLC1                  0.014   kinesin light chain 1 isoform 3 
KLC1                  0.014   kinesin light chain 1 isoform 2 
KLC1                  0.014   kinesin light chain 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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