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Search of human proteins with 11321638
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11321638 homeobox C5 [Homo sapiens]
(222 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11321638 homeobox C5 [Homo sapiens] 462 e-131
gi|24497517 homeobox A5 [Homo sapiens] 186 1e-47
gi|4504469 homeobox B5 [Homo sapiens] 176 2e-44
gi|23397672 homeobox D4 [Homo sapiens] 142 3e-34
gi|148613882 homeobox A4 [Homo sapiens] 139 2e-33
gi|24497538 homeobox C4 [Homo sapiens] 136 2e-32
gi|24497540 homeobox C4 [Homo sapiens] 136 2e-32
gi|13273315 homeobox B4 [Homo sapiens] 134 6e-32
gi|23503237 homeobox B6 [Homo sapiens] 127 8e-30
gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 125 4e-29
gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 125 4e-29
gi|13489077 homeobox A6 [Homo sapiens] 124 5e-29
gi|85068580 homeobox B7 [Homo sapiens] 124 5e-29
gi|24497556 homeobox A7 [Homo sapiens] 123 1e-28
gi|15029506 homeobox D8 [Homo sapiens] 110 1e-24
gi|24497513 homeobox A3 isoform a [Homo sapiens] 107 1e-23
gi|13562112 homeobox A3 isoform a [Homo sapiens] 107 1e-23
gi|13273317 homeobox B8 [Homo sapiens] 106 1e-23
gi|19923391 homeobox D3 [Homo sapiens] 103 1e-22
gi|12056969 homeobox C8 [Homo sapiens] 103 1e-22
gi|194363768 homeobox D9 [Homo sapiens] 100 2e-21
gi|15029508 homeobox B9 [Homo sapiens] 97 8e-21
gi|24497547 homeobox C9 [Homo sapiens] 97 1e-20
gi|84570137 homeobox B3 [Homo sapiens] 97 1e-20
gi|24497515 homeobox A3 isoform b [Homo sapiens] 96 2e-20
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 96 3e-20
gi|23097236 homeobox A9 [Homo sapiens] 93 2e-19
gi|10140847 homeobox A2 [Homo sapiens] 93 2e-19
gi|13375632 homeobox D1 [Homo sapiens] 93 2e-19
gi|121114296 caudal type homeobox 1 [Homo sapiens] 91 8e-19
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 462 bits (1190), Expect = e-131
Identities = 222/222 (100%), Positives = 222/222 (100%)
Query: 1 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLSITFPPPAPSNSLHG 60
MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLSITFPPPAPSNSLHG
Sbjct: 1 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLSITFPPPAPSNSLHG 60
Query: 61 VDMAANPRAHPDRPACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALEERAKSSGEIKE 120
VDMAANPRAHPDRPACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALEERAKSSGEIKE
Sbjct: 61 VDMAANPRAHPDRPACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALEERAKSSGEIKE 120
Query: 121 EQAQTGQPAGLSQPPAPPQIYPWMTKLHMSHETDGKRSRTSYTRYQTLELEKEFHFNRYL 180
EQAQTGQPAGLSQPPAPPQIYPWMTKLHMSHETDGKRSRTSYTRYQTLELEKEFHFNRYL
Sbjct: 121 EQAQTGQPAGLSQPPAPPQIYPWMTKLHMSHETDGKRSRTSYTRYQTLELEKEFHFNRYL 180
Query: 181 TRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKSKEAL 222
TRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKSKEAL
Sbjct: 181 TRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKSKEAL 222
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 186 bits (473), Expect = 1e-47
Identities = 118/263 (44%), Positives = 147/263 (55%), Gaps = 50/263 (19%)
Query: 1 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASE-------VQASRYCYG--GLDLSITFPP 51
MSSY NSF + PN P Y + G++ S SE + + RY YG G+DLS+
Sbjct: 1 MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSV---- 56
Query: 52 PAPSNSLH------GVDMAANPRAHPDRPACSAAAAPGHAPGRD----EAAPLNPGMYSQ 101
S S H AA+ A P P S A H+P D A +PG S
Sbjct: 57 -GRSGSGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSH 115
Query: 102 KAARPALEERA------------------KSSGEIKEEQAQTGQPAGLSQP----PAPPQ 139
+ +L + +SG ++ A + Q + S+P PA PQ
Sbjct: 116 HGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQ 175
Query: 140 IYPWMTKLHMSHET----DGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLN 195
IYPWM KLH+SH+ +GKR+RT+YTRYQTLELEKEFHFNRYLTRRRRIEIA+ LCL+
Sbjct: 176 IYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS 235
Query: 196 ERQIKIWFQNRRMKWKKDSKMKS 218
ERQIKIWFQNRRMKWKKD+K+KS
Sbjct: 236 ERQIKIWFQNRRMKWKKDNKLKS 258
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 176 bits (445), Expect = 2e-44
Identities = 110/263 (41%), Positives = 140/263 (53%), Gaps = 51/263 (19%)
Query: 1 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASR------------YCYGGLDLSIT 48
MSSY NSF + PN P Y + NYGS S + S Y Y G+DLS+
Sbjct: 1 MSSYFVNSFSGRYPNGPDYQLL---NYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSVN 57
Query: 49 ------------------FPPPAPSNSLHGVDMAANPRAHPDRPACSAAAAPGHAPGRDE 90
FP PA + + + P+ C+ + G P
Sbjct: 58 RSSASSSHFGAVGESSRAFPAPAQEPRFRQAASSCS-LSSPESLPCTNGDSHGAKPSA-- 114
Query: 91 AAPLNPGMYSQKAARPALEERAKSSGEIKEEQAQTGQPAGLSQPPAP------------P 138
++P + + +A + A +S E +E +Q P+ P P P
Sbjct: 115 SSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTP 174
Query: 139 QIYPWMTKLHMSHET---DGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLN 195
QI+PWM KLH+SH+ DGKR+RT+YTRYQTLELEKEFHFNRYLTRRRRIEIA+ LCL+
Sbjct: 175 QIFPWMRKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS 234
Query: 196 ERQIKIWFQNRRMKWKKDSKMKS 218
ERQIKIWFQNRRMKWKKD+K+KS
Sbjct: 235 ERQIKIWFQNRRMKWKKDNKLKS 257
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 142 bits (357), Expect = 3e-34
Identities = 100/227 (44%), Positives = 113/227 (49%), Gaps = 25/227 (11%)
Query: 1 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLSITFPPPAPSNSLHG 60
MSSY+ NS Y P P G Y Q + Y YGG F PP
Sbjct: 3 MSSYMVNSKYVD-PKFPPCEEYLQGGYLGE---QGADY-YGGGAQGADFQPPG---LYPR 54
Query: 61 VDMAANPRAHPDRPACSAAAAPGHA-----PGRDEAAPLNPGMYSQKAARPALEERAKSS 115
D P SA A GH PG AAP P P A
Sbjct: 55 PDFGEQPFGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEP------CPAPPAPPPAPLP 108
Query: 116 GEIKEEQAQTGQPAGLSQPPAPPQIYPWMTKLHMS----HETDG--KRSRTSYTRYQTLE 169
G Q+ QP + P +YPWM K+H++ + T G KRSRT+YTR Q LE
Sbjct: 109 GARAYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLE 168
Query: 170 LEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKM 216
LEKEFHFNRYLTRRRRIEIA+ LCL+ERQIKIWFQNRRMKWKKD K+
Sbjct: 169 LEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKL 215
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 139 bits (350), Expect = 2e-33
Identities = 84/182 (46%), Positives = 103/182 (56%), Gaps = 31/182 (17%)
Query: 59 HGVDMAANPRAHPDRPACSAAAAPGHAPGRDEAAPLNPGM---YSQKAARPALEERAKSS 115
+G A+P P +P A A G A G + L P + +A PA R +++
Sbjct: 102 YGYRGGASP-GRPPQPEQPPAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAA 160
Query: 116 GEIKEEQAQTGQPAGLSQPPAP---------------PQIYPWMTKLHMS------HETD 154
A G PAG S P P P +YPWM K+H+S + +
Sbjct: 161 ------PATPGVPAGGSAPACPLLLADKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGE 214
Query: 155 GKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDS 214
KRSRT+YTR Q LELEKEFHFNRYLTRRRRIEIA+ LCL+ERQ+KIWFQNRRMKWKKD
Sbjct: 215 PKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDH 274
Query: 215 KM 216
K+
Sbjct: 275 KL 276
Score = 32.0 bits (71), Expect = 0.43
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 106 PALEERAKSSGEIKEEQAQTGQPAGLSQPPAPPQIYPWMTKLHMSHETDGKRSRTSY 162
P EE A+ SG + G P G QPPAPP + + + + H G+ SY
Sbjct: 18 PPFEEYAQHSGSGGADGGPGGGP-GYQQPPAPPTQHLPLQQPQLPHAGGGREPTASY 73
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 136 bits (342), Expect = 2e-32
Identities = 95/241 (39%), Positives = 121/241 (50%), Gaps = 51/241 (21%)
Query: 1 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLSITF--------PPP 52
MSSY+ +S Y P P C Y S + Y G F PPP
Sbjct: 3 MSSYLMDSNYID-PKFPP-----CEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPP 56
Query: 53 APSNSLHGVDMAANPRAHPDRP-ACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALEER 111
P S +P+R +C++ PG++ G P G + + ++ E
Sbjct: 57 PPRPS------------YPERQYSCTSLQGPGNSRGH---GPAQAGHHHPEKSQSLCEPA 101
Query: 112 AKSSGEIKEEQAQTGQPAGLSQPPAP----------PQIYPWMTKLHMS------HETDG 155
S A P SQP AP P +YPWM K+H+S + +
Sbjct: 102 PLSGASASPSPA----PPACSQP-APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEP 156
Query: 156 KRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSK 215
KRSRT+YTR Q LELEKEFH+NRYLTRRRRIEIA++LCL+ERQIKIWFQNRRMKWKKD +
Sbjct: 157 KRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 216
Query: 216 M 216
+
Sbjct: 217 L 217
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 136 bits (342), Expect = 2e-32
Identities = 95/241 (39%), Positives = 121/241 (50%), Gaps = 51/241 (21%)
Query: 1 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLSITF--------PPP 52
MSSY+ +S Y P P C Y S + Y G F PPP
Sbjct: 3 MSSYLMDSNYID-PKFPP-----CEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPP 56
Query: 53 APSNSLHGVDMAANPRAHPDRP-ACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALEER 111
P S +P+R +C++ PG++ G P G + + ++ E
Sbjct: 57 PPRPS------------YPERQYSCTSLQGPGNSRGH---GPAQAGHHHPEKSQSLCEPA 101
Query: 112 AKSSGEIKEEQAQTGQPAGLSQPPAP----------PQIYPWMTKLHMS------HETDG 155
S A P SQP AP P +YPWM K+H+S + +
Sbjct: 102 PLSGASASPSPA----PPACSQP-APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEP 156
Query: 156 KRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSK 215
KRSRT+YTR Q LELEKEFH+NRYLTRRRRIEIA++LCL+ERQIKIWFQNRRMKWKKD +
Sbjct: 157 KRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 216
Query: 216 M 216
+
Sbjct: 217 L 217
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 134 bits (337), Expect = 6e-32
Identities = 94/245 (38%), Positives = 116/245 (47%), Gaps = 53/245 (21%)
Query: 1 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASR---YCYGGLDLSITFPPPAPSNS 57
MSS++ NS Y P P C Y + + + Y GG +F P A
Sbjct: 3 MSSFLINSNYVD-PKFPP-----CEEYSQSDYLPSDHSPGYYAGGQRRESSFQPEAGFGR 56
Query: 58 LHGVDMAANPRAHPDRPACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALEERAKS--- 114
R AC+ +A RD P P P L RA +
Sbjct: 57 ---------------RAACTVQR---YAACRDPGPPPPPPPPPPPPPPPGLSPRAPAPPP 98
Query: 115 SGEIKEEQAQTGQPAGLSQPPAP-----------------PQIYPWMTKLHMSHET---- 153
+G + E Q + S PP P P +YPWM K+H+S
Sbjct: 99 AGALLPEPGQRCEAVSSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYA 158
Query: 154 --DGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWK 211
+ KRSRT+YTR Q LELEKEFH+NRYLTRRRR+EIA+ LCL+ERQIKIWFQNRRMKWK
Sbjct: 159 GGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWK 218
Query: 212 KDSKM 216
KD K+
Sbjct: 219 KDHKL 223
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 127 bits (319), Expect = 8e-30
Identities = 75/169 (44%), Positives = 97/169 (57%), Gaps = 13/169 (7%)
Query: 67 PRAHPDRPACSAAAAPGHAPGRDEAAPLN----PGMYSQKAARPAL----EERAKSSGEI 118
P D+ +++ P G AAP + P Y +K + AL E+
Sbjct: 45 PGPGQDKGFATSSYYPPAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPR 104
Query: 119 KEEQAQTGQPAG-LSQPPAPPQIYPWMTKLHMSHETD----GKRSRTSYTRYQTLELEKE 173
K + AQ G + +YPWM +++ + + G+R R +YTRYQTLELEKE
Sbjct: 105 KSDCAQDKSVFGETEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKE 164
Query: 174 FHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKSKEAL 222
FH+NRYLTRRRRIEIA+ LCL ERQIKIWFQNRRMKWKK+SK+ S L
Sbjct: 165 FHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQL 213
>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
Length = 153
Score = 125 bits (313), Expect = 4e-29
Identities = 59/84 (70%), Positives = 68/84 (80%), Gaps = 4/84 (4%)
Query: 139 QIYPWMTKLH----MSHETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCL 194
QIYPWM +++ + + D +R R Y+RYQTLELEKEFHFNRYLTRRRRIEIAN LCL
Sbjct: 39 QIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCL 98
Query: 195 NERQIKIWFQNRRMKWKKDSKMKS 218
ERQIKIWFQNRRMKWKK+S + S
Sbjct: 99 TERQIKIWFQNRRMKWKKESNLTS 122
>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
Length = 235
Score = 125 bits (313), Expect = 4e-29
Identities = 59/84 (70%), Positives = 68/84 (80%), Gaps = 4/84 (4%)
Query: 139 QIYPWMTKLH----MSHETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCL 194
QIYPWM +++ + + D +R R Y+RYQTLELEKEFHFNRYLTRRRRIEIAN LCL
Sbjct: 121 QIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCL 180
Query: 195 NERQIKIWFQNRRMKWKKDSKMKS 218
ERQIKIWFQNRRMKWKK+S + S
Sbjct: 181 TERQIKIWFQNRRMKWKKESNLTS 204
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 124 bits (312), Expect = 5e-29
Identities = 57/81 (70%), Positives = 68/81 (83%), Gaps = 4/81 (4%)
Query: 140 IYPWMTKLHMS----HETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLN 195
+YPWM +++ + + G+R R +YTRYQTLELEKEFHFNRYLTRRRRIEIAN LCL
Sbjct: 136 VYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLT 195
Query: 196 ERQIKIWFQNRRMKWKKDSKM 216
ERQIKIWFQNRRMKWKK++K+
Sbjct: 196 ERQIKIWFQNRRMKWKKENKL 216
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 124 bits (312), Expect = 5e-29
Identities = 78/166 (46%), Positives = 90/166 (54%), Gaps = 23/166 (13%)
Query: 69 AHPDRPACSAAAAPGHAPGRDEAAPLNPGMYSQKAARP-----ALEERAKSSGEIKEEQA 123
++P RP A + A P GM Q AA LE + + EQ
Sbjct: 36 SNPQRPGYGAGSGASFAASMQGLYPGGGGMAGQSAAGVYAAGYGLEPSSFNMHCAPFEQN 95
Query: 124 QTGQPAGLSQPPAPPQ--------------IYPWMTKLHMSHETDGKRSRTSYTRYQTLE 169
+G G S A + IYPWM S TD KR R +YTRYQTLE
Sbjct: 96 LSGVCPGDSAKAAGAKEQRDSDLAAESNFRIYPWMR----SSGTDRKRGRQTYTRYQTLE 151
Query: 170 LEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSK 215
LEKEFH+NRYLTRRRRIEIA+ LCL ERQIKIWFQNRRMKWKK++K
Sbjct: 152 LEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENK 197
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 123 bits (308), Expect = 1e-28
Identities = 75/143 (52%), Positives = 85/143 (59%), Gaps = 13/143 (9%)
Query: 74 PACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPAL-EERAKSSGEIKEEQAQTGQPAGLS 132
P + A G+ G D L Y Q P L + AK + + +E A G
Sbjct: 60 PLYQSPFASGYGLGADAYGNLPCASYDQNI--PGLCSDLAKGACDKTDEGALHGAAE--- 114
Query: 133 QPPAPPQIYPWMTKLHMSHETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNL 192
A +IYPWM S D KR R +YTRYQTLELEKEFHFNRYLTRRRRIEIA+ L
Sbjct: 115 ---ANFRIYPWMR----SSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL 167
Query: 193 CLNERQIKIWFQNRRMKWKKDSK 215
CL ERQIKIWFQNRRMKWKK+ K
Sbjct: 168 CLTERQIKIWFQNRRMKWKKEHK 190
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 110 bits (275), Expect = 1e-24
Identities = 68/168 (40%), Positives = 87/168 (51%), Gaps = 23/168 (13%)
Query: 50 PPPAPSNSLHGVDMAANPRAHPDRPACSAAAAPGHAP---GRDEAAPLNPGMYSQKAARP 106
PPP P +P P P C A G G D Q+A
Sbjct: 109 PPPPP-----------HPPPPPPPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELV 157
Query: 107 ALEERAKSSGEIKEEQAQTGQPAGLSQPPAPPQIYPWMTKLHMSHETDGKRSRTSYTRYQ 166
+ SSG I E+ P L+Q +P Q++PWM +R R +Y+R+Q
Sbjct: 158 QYPDCKSSSGNIGED------PDHLNQSSSPSQMFPWMRP---QAAPGRRRGRQTYSRFQ 208
Query: 167 TLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDS 214
TLELEKEF FN YLTR+RRIE+++ L L ERQ+KIWFQNRRMKWKK++
Sbjct: 209 TLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKEN 256
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 107 bits (266), Expect = 1e-23
Identities = 84/224 (37%), Positives = 104/224 (46%), Gaps = 41/224 (18%)
Query: 17 PAYNMQTCGNYGSASEV-QASRYCYGGLDLSITFPPPAPSNSLHGVD-MAANPRAHPDRP 74
PA ++Q+ + G + + S C L + PP LH AA P P +P
Sbjct: 48 PACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQP 107
Query: 75 ACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALEERAKSSGEIKEEQAQTGQPAGLSQP 134
A A AP +A +P + PA AKS L+ P
Sbjct: 108 APQPPAPTPAAPPPPSSA--SPPQNASNNPTPA--NAAKSPL--------------LNSP 149
Query: 135 PAPPQIYPWM------TKLHMSHETDG---------------KRSRTSYTRYQTLELEKE 173
QI+PWM TK S + G KR+RT+YT Q +ELEKE
Sbjct: 150 TVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKE 209
Query: 174 FHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMK 217
FHFNRYL R RR+E+AN L L ERQIKIWFQNRRMK+KKD K K
Sbjct: 210 FHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGK 253
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 107 bits (266), Expect = 1e-23
Identities = 84/224 (37%), Positives = 104/224 (46%), Gaps = 41/224 (18%)
Query: 17 PAYNMQTCGNYGSASEV-QASRYCYGGLDLSITFPPPAPSNSLHGVD-MAANPRAHPDRP 74
PA ++Q+ + G + + S C L + PP LH AA P P +P
Sbjct: 48 PACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQP 107
Query: 75 ACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALEERAKSSGEIKEEQAQTGQPAGLSQP 134
A A AP +A +P + PA AKS L+ P
Sbjct: 108 APQPPAPTPAAPPPPSSA--SPPQNASNNPTPA--NAAKSPL--------------LNSP 149
Query: 135 PAPPQIYPWM------TKLHMSHETDG---------------KRSRTSYTRYQTLELEKE 173
QI+PWM TK S + G KR+RT+YT Q +ELEKE
Sbjct: 150 TVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKE 209
Query: 174 FHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMK 217
FHFNRYL R RR+E+AN L L ERQIKIWFQNRRMK+KKD K K
Sbjct: 210 FHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGK 253
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 106 bits (265), Expect = 1e-23
Identities = 50/85 (58%), Positives = 64/85 (75%), Gaps = 3/85 (3%)
Query: 130 GLSQPPAPPQIYPWMTKLHMSHETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIA 189
G Q P+P Q++PWM + +R R +Y+RYQTLELEKEF FN YLTR+RRIE++
Sbjct: 124 GSEQSPSPTQLFPWMRPQAAAGR---RRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVS 180
Query: 190 NNLCLNERQIKIWFQNRRMKWKKDS 214
+ L L ERQ+KIWFQNRRMKWKK++
Sbjct: 181 HALGLTERQVKIWFQNRRMKWKKEN 205
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 103 bits (257), Expect = 1e-22
Identities = 77/213 (36%), Positives = 100/213 (46%), Gaps = 44/213 (20%)
Query: 28 GSASEVQASRY----CYGGLDLSITFPPPAPSNSLHGVDMAANPRAHPDRPACSAAAAPG 83
GSA +Q+S + G +L+ + P NS G + P + ++ P
Sbjct: 65 GSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPPPPPP 124
Query: 84 HAPGRDEAAPLNPGMYSQKAARPALEERAKSSGEIKEEQAQTGQPAGLSQPPAPPQIYPW 143
P ++P NPG G + ++ + G A S QI+PW
Sbjct: 125 TLP---PSSPTNPG------------------GGVPAKKPKGGPNASSSSATISKQIFPW 163
Query: 144 M------TKLHMSHETDG-------------KRSRTSYTRYQTLELEKEFHFNRYLTRRR 184
M +K S T G KR RT+YT Q +ELEKEFHFNRYL R R
Sbjct: 164 MKESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPR 223
Query: 185 RIEIANNLCLNERQIKIWFQNRRMKWKKDSKMK 217
R+E+AN L L ERQIKIWFQNRRMK+KKD K K
Sbjct: 224 RVEMANLLNLTERQIKIWFQNRRMKYKKDQKAK 256
>gi|12056969 homeobox C8 [Homo sapiens]
Length = 242
Score = 103 bits (257), Expect = 1e-22
Identities = 57/125 (45%), Positives = 74/125 (59%), Gaps = 8/125 (6%)
Query: 90 EAAPLNPGMYSQKAARPALEERAKSSGEIKEEQAQTGQPAGLSQPPAPPQIYPWMTKLHM 149
EA P +Q+ A KSS + Q L+Q +P ++PWM
Sbjct: 92 EALPRQSLYGAQQEASVVQYPDCKSSANTNSSEGQ----GHLNQNSSPSLMFPWMRP--- 144
Query: 150 SHETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMK 209
H + R +Y+RYQTLELEKEF FN YLTR+RRIE+++ L L ERQ+KIWFQNRRMK
Sbjct: 145 -HAPGRRSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMK 203
Query: 210 WKKDS 214
WKK++
Sbjct: 204 WKKEN 208
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 99.8 bits (247), Expect = 2e-21
Identities = 63/141 (44%), Positives = 75/141 (53%), Gaps = 10/141 (7%)
Query: 77 SAAAAPGHAPGRDEAAPLNPGMYSQKAARPALEERAKSSGEIKEEQAQTGQPAGLSQPPA 136
+AAA G PG A G S+ +A + +KEE+ Q QP P
Sbjct: 217 AAAATGGTGPGAGIGAATGTGGSSEPSA---CSDHPIPGCSLKEEEKQHSQPQQQQLDPN 273
Query: 137 PPQIYPWMTKLHMSHETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNE 196
P W+ H ++ R YT+YQTLELEKEF FN YLTR RR E+A L L E
Sbjct: 274 NPAAN-WI------HARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTE 326
Query: 197 RQIKIWFQNRRMKWKKDSKMK 217
RQ+KIWFQNRRMK KK SK K
Sbjct: 327 RQVKIWFQNRRMKMKKMSKEK 347
>gi|15029508 homeobox B9 [Homo sapiens]
Length = 250
Score = 97.4 bits (241), Expect = 8e-21
Identities = 65/153 (42%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 74 PACSAAAAPGHAPGRDEAAPL--NPG-MYSQKAARPALEERAKSSGEIKEEQAQTGQPA- 129
PA AAPG +A PL PG + Q +LE A + ++ G
Sbjct: 101 PAPRGEAAPGQGQAAVKAEPLLGAPGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKI 160
Query: 130 --GLSQPPAPPQIYPWMTKLHMSHETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIE 187
G P Q P LH ++ R YT+YQTLELEKEF FN YLTR RR E
Sbjct: 161 CEGSEDKERPDQTNPSANWLHAR---SSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHE 217
Query: 188 IANNLCLNERQIKIWFQNRRMKWKKDSKMKSKE 220
+A L L+ERQ+KIWFQNRRMK KK +K + KE
Sbjct: 218 VARLLNLSERQVKIWFQNRRMKMKKMNKEQGKE 250
>gi|24497547 homeobox C9 [Homo sapiens]
Length = 260
Score = 96.7 bits (239), Expect = 1e-20
Identities = 67/167 (40%), Positives = 86/167 (51%), Gaps = 20/167 (11%)
Query: 54 PSNSLHGVDMAANPRAHPDRPACSAAAAPGHAPGRDEAAPLNPGMYSQKAAR--PALEER 111
PS G A P A+P R A PG + +PG +A + P+ E
Sbjct: 107 PSFPAGGRHYALKPDAYPGR---RADCGPGEGRSYPDYMYGSPGELRDRAPQTLPSPEAD 163
Query: 112 AKSSGEIKEEQAQTGQPAGLSQPPAPPQIYPWMTKLHMSHETDGKRSRTSYTRYQTLELE 171
A + + KEE+A P+ P + W+ H ++ R YT+YQTLELE
Sbjct: 164 ALAGSKHKEEKADLD--------PSNP-VANWI------HARSTRKKRCPYTKYQTLELE 208
Query: 172 KEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKS 218
KEF FN YLTR RR E+A L L ERQ+KIWFQNRRMK KK +K K+
Sbjct: 209 KEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKT 255
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 96.7 bits (239), Expect = 1e-20
Identities = 46/62 (74%), Positives = 53/62 (85%)
Query: 156 KRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSK 215
KR+RT+YT Q +ELEKEFHFNRYL R RR+E+AN L L+ERQIKIWFQNRRMK+KKD K
Sbjct: 189 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQK 248
Query: 216 MK 217
K
Sbjct: 249 AK 250
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 96.3 bits (238), Expect = 2e-20
Identities = 46/66 (69%), Positives = 53/66 (80%)
Query: 152 ETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWK 211
+ KR+RT+YT Q +ELEKEFHFNRYL R RR+E+AN L L ERQIKIWFQNRRMK+K
Sbjct: 30 QASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYK 89
Query: 212 KDSKMK 217
KD K K
Sbjct: 90 KDQKGK 95
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 95.5 bits (236), Expect = 3e-20
Identities = 51/104 (49%), Positives = 64/104 (61%), Gaps = 13/104 (12%)
Query: 127 QPAGLSQPPAPPQIYPWM--TKLHM-----------SHETDGKRSRTSYTRYQTLELEKE 173
+P L +P +PWM TK H + + KR+RT+YTR Q LELEKE
Sbjct: 105 EPGVLEEPNRVQLPFPWMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKE 164
Query: 174 FHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMK 217
F FN+Y++R RR+E+A L L ER IKIWFQNRRMKWKK+ K
Sbjct: 165 FLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEEDKK 208
>gi|23097236 homeobox A9 [Homo sapiens]
Length = 272
Score = 93.2 bits (230), Expect = 2e-19
Identities = 52/115 (45%), Positives = 67/115 (58%), Gaps = 6/115 (5%)
Query: 106 PALEERAKSSGEIKEEQAQTGQPAGLSQPPAPPQIYPWMTKLHMSHETDGKRSRTSYTRY 165
P E+ S G E A+ +G +PP P + H ++ R YT++
Sbjct: 163 PVDREKQPSEGAFSENNAEN--ESGGDKPPIDPN----NPAANWLHARSTRKKRCPYTKH 216
Query: 166 QTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKSKE 220
QTLELEKEF FN YLTR RR E+A L L ERQ+KIWFQNRRMK KK +K ++K+
Sbjct: 217 QTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKD 271
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 92.8 bits (229), Expect = 2e-19
Identities = 69/196 (35%), Positives = 89/196 (45%), Gaps = 21/196 (10%)
Query: 30 ASEVQASRYCYGGLDLSITFPPPAPSNSLHGVDMAANPRAHPDRPACSAAAAPGHAPGRD 89
A Q+S L S PPP + NP +HP R P A R
Sbjct: 29 ADTFQSSSIKTSTLSHSTLIPPPFEQTI-----PSLNPGSHP-RHGAGGRPKPSPAGSRG 82
Query: 90 EAAP---LNPGMYSQKAARPALEERAKSSGEIKEEQAQTGQPAGLSQPPAPPQIYPWMTK 146
P L P Y + A ++ A A PA LS +
Sbjct: 83 SPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKES---------- 132
Query: 147 LHMSHETDG--KRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQ 204
L ++ + G +R RT+YT Q LELEKEFHFN+YL R RR+EIA L L ERQ+K+WFQ
Sbjct: 133 LEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQ 192
Query: 205 NRRMKWKKDSKMKSKE 220
NRRMK K+ ++ K +
Sbjct: 193 NRRMKHKRQTQCKENQ 208
>gi|13375632 homeobox D1 [Homo sapiens]
Length = 328
Score = 92.8 bits (229), Expect = 2e-19
Identities = 69/163 (42%), Positives = 83/163 (50%), Gaps = 39/163 (23%)
Query: 61 VDMAANPRAHPDRPACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALEERAKSSGEIKE 120
VD AA P PAC A+A GH PG + A PG Y K+ PA
Sbjct: 152 VDYAAFGEPGPF-PACLKASADGH-PGAFQTASPAPGTYP-KSVSPA------------- 195
Query: 121 EQAQTGQPAGLSQPPAPPQIYPWMTKLHMSHETDGKRS-----------RTSYTRYQTLE 169
+G PA S + WM K+ + GK + RT+++ Q E
Sbjct: 196 ----SGLPAAFST-------FEWM-KVKRNASKKGKLAEYGAASPSSAIRTNFSTKQLTE 243
Query: 170 LEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKK 212
LEKEFHFN+YLTR RRIEIAN L LN+ Q+KIWFQNRRMK KK
Sbjct: 244 LEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKK 286
>gi|121114296 caudal type homeobox 1 [Homo sapiens]
Length = 265
Score = 90.9 bits (224), Expect = 8e-19
Identities = 69/193 (35%), Positives = 90/193 (46%), Gaps = 30/193 (15%)
Query: 50 PPPAPSNSLHGVDMAANPRAHPDRPACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALE 109
PPPAP D ++ P +A AP AP D AA PG A PA
Sbjct: 35 PPPAPPQY---PDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAAAYGPG-----PAAPAAS 86
Query: 110 ERAKSSG---EIKEEQAQTGQPAGL--------SQPPAP----PQIYPWMTKLHMSHETD 154
+ + G + A G GL P +P P Y WM + +
Sbjct: 87 PASLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSPGAQRPTPYEWMRRSVAAGGGG 146
Query: 155 GK-------RSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRR 207
G + R YT +Q LELEKEFH++RY+T RR+ E+A NL L ERQ+KIWFQNRR
Sbjct: 147 GSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRR 206
Query: 208 MKWKKDSKMKSKE 220
K +K +K K ++
Sbjct: 207 AKERKVNKKKQQQ 219
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.128 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,246,697
Number of Sequences: 37866
Number of extensions: 522447
Number of successful extensions: 3432
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 234
Number of HSP's that attempted gapping in prelim test: 2884
Number of HSP's gapped (non-prelim): 744
length of query: 222
length of database: 18,247,518
effective HSP length: 98
effective length of query: 124
effective length of database: 14,536,650
effective search space: 1802544600
effective search space used: 1802544600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.