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Search of human proteins with 113206024
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113206024 mucin 1 isoform 5 precursor [Homo sapiens]
(203 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|113206024 mucin 1 isoform 5 precursor [Homo sapiens] 413 e-116
gi|67189069 mucin 1 isoform 3 precursor [Homo sapiens] 297 4e-81
gi|67189007 mucin 1 isoform 2 precursor [Homo sapiens] 290 8e-79
gi|65301117 mucin 1 isoform 1 precursor [Homo sapiens] 239 9e-64
gi|113206026 mucin 1 isoform 6 precursor [Homo sapiens] 215 2e-56
gi|113206028 mucin 1 isoform 7 precursor [Homo sapiens] 207 5e-54
gi|113206030 mucin 1 isoform 8 precursor [Homo sapiens] 181 4e-46
gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens] 33 0.17
gi|239752490 PREDICTED: similar to Mucin-12 [Homo sapiens] 33 0.17
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 33 0.17
gi|239740898 PREDICTED: hypothetical protein [Homo sapiens] 32 0.37
gi|239740777 PREDICTED: hypothetical protein [Homo sapiens] 32 0.37
gi|239740724 PREDICTED: hypothetical protein [Homo sapiens] 32 0.37
gi|130980072 CD33 antigen isoform 2 precursor [Homo sapiens] 32 0.48
gi|130979981 CD33 antigen isoform 1 precursor [Homo sapiens] 32 0.48
gi|163965366 nascent polypeptide-associated complex alpha subuni... 32 0.48
gi|212274327 transmembrane protein 151B [Homo sapiens] 31 0.83
gi|239754269 PREDICTED: hypothetical protein [Homo sapiens] 30 1.4
gi|169168665 PREDICTED: hypothetical protein [Homo sapiens] 30 1.4
gi|113417486 PREDICTED: hypothetical protein [Homo sapiens] 30 1.4
gi|239740827 PREDICTED: hypothetical protein XP_002344067 [Homo ... 30 1.4
gi|239740674 PREDICTED: hypothetical protein [Homo sapiens] 30 1.4
gi|239740645 PREDICTED: hypothetical protein [Homo sapiens] 30 1.4
gi|239513940 PREDICTED: hypothetical protein [Homo sapiens] 30 1.4
gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo ... 30 1.4
gi|193788640 dopachrome tautomerase isoform 2 [Homo sapiens] 30 1.4
gi|6041667 dopachrome tautomerase isoform 1 [Homo sapiens] 30 1.4
gi|189181724 proteoglycan 4 isoform D [Homo sapiens] 30 1.8
gi|189181722 proteoglycan 4 isoform C [Homo sapiens] 30 1.8
gi|189181720 proteoglycan 4 isoform B [Homo sapiens] 30 1.8
>gi|113206024 mucin 1 isoform 5 precursor [Homo sapiens]
Length = 203
Score = 413 bits (1062), Expect = e-116
Identities = 203/203 (100%), Positives = 203/203 (100%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT
Sbjct: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
Query: 61 KSCRETFLKCFCRFINKGVFWASPILSSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVA 120
KSCRETFLKCFCRFINKGVFWASPILSSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVA
Sbjct: 61 KSCRETFLKCFCRFINKGVFWASPILSSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVA 120
Query: 121 LAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKV 180
LAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKV
Sbjct: 121 LAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKV 180
Query: 181 SAGNGGSSLSYTNPAVAATSANL 203
SAGNGGSSLSYTNPAVAATSANL
Sbjct: 181 SAGNGGSSLSYTNPAVAATSANL 203
>gi|67189069 mucin 1 isoform 3 precursor [Homo sapiens]
Length = 255
Score = 297 bits (761), Expect = 4e-81
Identities = 165/255 (64%), Positives = 176/255 (69%), Gaps = 52/255 (20%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRS----SVPSSTEKNAIPA 56
MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRS S + +++
Sbjct: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLED 60
Query: 57 PTTT--KSCRETFLKCFCRFINKGVFWASPILS--------------------------- 87
P+T + + + F + +G F +
Sbjct: 61 PSTDYYQELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQLTLAFREGTINVHDVETQ 120
Query: 88 -------------------SVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVALAIVYLIA 128
SVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVALAIVYLIA
Sbjct: 121 FNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVALAIVYLIA 180
Query: 129 LAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS 188
LAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS
Sbjct: 181 LAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS 240
Query: 189 LSYTNPAVAATSANL 203
LSYTNPAVAATSANL
Sbjct: 241 LSYTNPAVAATSANL 255
>gi|67189007 mucin 1 isoform 2 precursor [Homo sapiens]
Length = 264
Score = 290 bits (741), Expect = 8e-79
Identities = 165/264 (62%), Positives = 176/264 (66%), Gaps = 61/264 (23%)
Query: 1 MTPGTQSPFFLLLLLTVLT---------VVTGSGHASSTPGGEKETSATQRS----SVPS 47
MTPGTQSPFFLLLLLTVLT VVTGSGHASSTPGGEKETSATQRS S
Sbjct: 1 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 60
Query: 48 STEKNAIPAPTTT--KSCRETFLKCFCRFINKGVFWASPILS------------------ 87
+ +++ P+T + + + F + +G F +
Sbjct: 61 NAFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQLTLAFREGT 120
Query: 88 ----------------------------SVSDVPFPFSAQSGAGVPGWGIALLVLVCVLV 119
SVSDVPFPFSAQSGAGVPGWGIALLVLVCVLV
Sbjct: 121 INVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLV 180
Query: 120 ALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEK 179
ALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEK
Sbjct: 181 ALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEK 240
Query: 180 VSAGNGGSSLSYTNPAVAATSANL 203
VSAGNGGSSLSYTNPAVAATSANL
Sbjct: 241 VSAGNGGSSLSYTNPAVAATSANL 264
>gi|65301117 mucin 1 isoform 1 precursor [Homo sapiens]
Length = 273
Score = 239 bits (611), Expect = 9e-64
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 88 SVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPA 147
SVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPA
Sbjct: 158 SVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPA 217
Query: 148 RDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSANL 203
RDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSANL
Sbjct: 218 RDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSANL 273
Score = 106 bits (264), Expect = 2e-23
Identities = 53/54 (98%), Positives = 54/54 (100%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAI 54
MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNA+
Sbjct: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAL 54
>gi|113206026 mucin 1 isoform 6 precursor [Homo sapiens]
Length = 150
Score = 215 bits (547), Expect = 2e-56
Identities = 120/203 (59%), Positives = 131/203 (64%), Gaps = 53/203 (26%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQ ++++P+ T
Sbjct: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQ---------RSSVPSSTEK 51
Query: 61 KSCRETFLKCFCRFINKGVFWASPILSSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVA 120
+ SS+ D + + +
Sbjct: 52 NAFN----------------------SSLEDPSTDYYQELQRDIS--------------- 74
Query: 121 LAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKV 180
+AVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKV
Sbjct: 75 -------EMAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKV 127
Query: 181 SAGNGGSSLSYTNPAVAATSANL 203
SAGNGGSSLSYTNPAVAATSANL
Sbjct: 128 SAGNGGSSLSYTNPAVAATSANL 150
>gi|113206028 mucin 1 isoform 7 precursor [Homo sapiens]
Length = 159
Score = 207 bits (527), Expect = 5e-54
Identities = 120/212 (56%), Positives = 131/212 (61%), Gaps = 62/212 (29%)
Query: 1 MTPGTQSPFFLLLLLTVLT---------VVTGSGHASSTPGGEKETSATQRSSVPSSTEK 51
MTPGTQSPFFLLLLLTVLT VVTGSGHASSTPGGEKETSATQ +
Sbjct: 1 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQ---------R 51
Query: 52 NAIPAPTTTKSCRETFLKCFCRFINKGVFWASPILSSVSDVPFPFSAQSGAGVPGWGIAL 111
+++P+ T + SS+ D + + +
Sbjct: 52 SSVPSSTEKNAFN----------------------SSLEDPSTDYYQELQRDIS------ 83
Query: 112 LVLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSS 171
+AVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSS
Sbjct: 84 ----------------EMAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSS 127
Query: 172 TDRSPYEKVSAGNGGSSLSYTNPAVAATSANL 203
TDRSPYEKVSAGNGGSSLSYTNPAVAATSANL
Sbjct: 128 TDRSPYEKVSAGNGGSSLSYTNPAVAATSANL 159
>gi|113206030 mucin 1 isoform 8 precursor [Homo sapiens]
Length = 158
Score = 181 bits (459), Expect = 4e-46
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT
Sbjct: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
Query: 61 KSCRETFLKCFCRFINKGVFWASPILSSV 89
KSCRETFLKCFCRFINKGVFWASPILSSV
Sbjct: 61 KSCRETFLKCFCRFINKGVFWASPILSSV 89
>gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens]
Length = 587
Score = 33.1 bits (74), Expect = 0.17
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRE 65
ASST G E S T SS P STE A+P TTT E
Sbjct: 452 ASSTTLGRSEESTTVHSS-PGSTETTALPGSTTTAGLSE 489
Score = 27.3 bits (59), Expect = 9.1
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
AS+T G E S T S P ST A P TTT
Sbjct: 142 ASTTSSGVSEESTTSHSR-PGSTHTTAFPDSTTT 174
>gi|239752490 PREDICTED: similar to Mucin-12 [Homo sapiens]
Length = 456
Score = 33.1 bits (74), Expect = 0.17
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRE 65
ASST G E S T SS P STE A+P TTT E
Sbjct: 346 ASSTTLGRSEESTTVHSS-PGSTETTALPGSTTTAGLSE 383
Score = 27.3 bits (59), Expect = 9.1
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
AS+T G E S T S P ST A P TTT
Sbjct: 36 ASTTSSGVSEESTTSHSR-PGSTHTTAFPDSTTT 68
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 33.1 bits (74), Expect = 0.17
Identities = 19/39 (48%), Positives = 20/39 (51%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRE 65
AS+T G E S T SS P STE P TTT RE
Sbjct: 3929 ASTTTPGLSEESTTVYSSSPGSTETTVFPRSTTTSVRRE 3967
Score = 31.2 bits (69), Expect = 0.63
Identities = 17/34 (50%), Positives = 18/34 (52%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
AS+T G E S T SS P STE P TTT
Sbjct: 2846 ASTTTPGLSEESTTVYSSSPGSTETTVFPRSTTT 2879
Score = 30.0 bits (66), Expect = 1.4
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGE--KETSATQRSSVPSSTEKNAIPAPT 58
+ P + LL T + TGS H + +P G ++ +T S PSS K+ +PAP
Sbjct: 1789 LLPDNTTASGLLEASTPVHSSTGSPHTTLSPAGSTTRQGESTTFQSWPSS--KDTMPAPP 1846
Query: 59 TTKS 62
TT S
Sbjct: 1847 TTTS 1850
Score = 29.3 bits (64), Expect = 2.4
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
AS+T G E S T RS P ST A P TTT
Sbjct: 983 ASTTSSGVSEESTTSRSR-PGSTHTTAFPDSTTT 1015
Score = 28.1 bits (61), Expect = 5.3
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGE--KETSATQRSSVPSSTEKNAIPAPT 58
+ P + LL T + TGS H + +P G ++ +T S P+S K+ PAP
Sbjct: 3346 LLPDNTTASGLLEASTPVHSSTGSPHTTLSPAGSTTRQGESTTFQSWPNS--KDTTPAPP 3403
Query: 59 TTKS 62
TT S
Sbjct: 3404 TTTS 3407
Score = 28.1 bits (61), Expect = 5.3
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGE--KETSATQRSSVPSSTEKNAIPAPT 58
+ P + LL T + TGS H + +P G ++ +T S P+S K+ PAP
Sbjct: 4429 LLPDNTTASGLLEASTPVHSSTGSPHTTLSPAGSTTRQGESTTFQSWPNS--KDTTPAPP 4486
Query: 59 TTKS 62
TT S
Sbjct: 4487 TTTS 4490
Score = 27.7 bits (60), Expect = 7.0
Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRE 65
AS T G E S T RS P ST PA TTT E
Sbjct: 1261 ASMTSLGVGEESTTSRSQ-PGSTHSTVSPASTTTPGLSE 1298
Score = 27.7 bits (60), Expect = 7.0
Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRE 65
AS T G E S T RS P ST PA TTT E
Sbjct: 2344 ASMTSLGVGEESTTSRSQ-PGSTHSTVSPASTTTPGLSE 2381
Score = 27.7 bits (60), Expect = 7.0
Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRE 65
AS T G E S T RS P ST PA TTT E
Sbjct: 2818 ASMTSLGVGEESTTSRSQ-PGSTHSTVSPASTTTPGLSE 2855
Score = 27.7 bits (60), Expect = 7.0
Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRE 65
AS T G E S T RS P ST PA TTT E
Sbjct: 3901 ASMTSLGVGEESTTSRSQ-PGSTHSTVSPASTTTPGLSE 3938
Score = 27.3 bits (59), Expect = 9.1
Identities = 16/34 (47%), Positives = 17/34 (50%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
AS+T G E S T SS STE P TTT
Sbjct: 1289 ASTTTPGLSEESTTVYSSSRGSTETTVFPHSTTT 1322
Score = 27.3 bits (59), Expect = 9.1
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
AS+T G E S T S P ST A P TTT
Sbjct: 2066 ASTTSSGVSEESTTSHSR-PGSTHTTAFPDSTTT 2098
Score = 27.3 bits (59), Expect = 9.1
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
AS+T G E S T S P ST A P TTT
Sbjct: 3623 ASTTSSGVSEESTTSHSR-PGSTHTTAFPDSTTT 3655
>gi|239740898 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1542
Score = 32.0 bits (71), Expect = 0.37
Identities = 37/143 (25%), Positives = 54/143 (37%), Gaps = 20/143 (13%)
Query: 22 TGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRETFLKCFCRFINKGVFW 81
T S + + PG TS S++ +S+ +A TTT S RE F G
Sbjct: 1349 TASAASHTVPGIVLNTSGLGTSTMGASSTTSAHGVRTTTGSTRE---PTSSTFQETGPVS 1405
Query: 82 ASPILSSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQ 141
S+S P SG P W I L+ L V+ A+ + + L+ C
Sbjct: 1406 MGTNTVSMSHTPTNVIKPSGYLQP-WAIILISLAAVVAAVGL--SVGLSFC--------- 1453
Query: 142 LDIFPARDTYHPMSEYPTYHTHG 164
RD + P+ Y+ HG
Sbjct: 1454 -----LRDLFFPLRYCGIYYPHG 1471
>gi|239740777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1612
Score = 32.0 bits (71), Expect = 0.37
Identities = 37/143 (25%), Positives = 54/143 (37%), Gaps = 20/143 (13%)
Query: 22 TGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRETFLKCFCRFINKGVFW 81
T S + + PG TS S++ +S+ +A TTT S RE F G
Sbjct: 1328 TASAASHTVPGIVLNTSGLGTSTMGASSTTSAHGVRTTTGSTRE---PTSSTFQETGPVS 1384
Query: 82 ASPILSSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQ 141
S+S P SG P W I L+ L V+ A+ + + L+ C
Sbjct: 1385 MGTNTVSMSHTPTNVIKPSGYLQP-WAIILISLAAVVAAVGL--SVGLSFC--------- 1432
Query: 142 LDIFPARDTYHPMSEYPTYHTHG 164
RD + P+ Y+ HG
Sbjct: 1433 -----LRDLFFPLRYCGIYYPHG 1450
>gi|239740724 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1704
Score = 32.0 bits (71), Expect = 0.37
Identities = 37/143 (25%), Positives = 54/143 (37%), Gaps = 20/143 (13%)
Query: 22 TGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRETFLKCFCRFINKGVFW 81
T S + + PG TS S++ +S+ +A TTT S RE F G
Sbjct: 1328 TASAASHTVPGIVLNTSGLGTSTMGASSTTSAHGVRTTTGSTRE---PTSSTFQETGPVS 1384
Query: 82 ASPILSSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQ 141
S+S P SG P W I L+ L V+ A+ + + L+ C
Sbjct: 1385 MGTNTVSMSHTPTNVIKPSGYLQP-WAIILISLAAVVAAVGL--SVGLSFC--------- 1432
Query: 142 LDIFPARDTYHPMSEYPTYHTHG 164
RD + P+ Y+ HG
Sbjct: 1433 -----LRDLFFPLRYCGIYYPHG 1450
>gi|130980072 CD33 antigen isoform 2 precursor [Homo sapiens]
Length = 237
Score = 31.6 bits (70), Expect = 0.48
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 4 GTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSC 63
G + L L L V T A+ T G +T T S+ P +K+ + PT T SC
Sbjct: 139 GVTALLALCLCLIFFIVKTHRRKAARTAVGRNDTHPTTGSASPKHQKKSKLHGPTETSSC 198
>gi|130979981 CD33 antigen isoform 1 precursor [Homo sapiens]
Length = 364
Score = 31.6 bits (70), Expect = 0.48
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 4 GTQSPFFLLLLLTVLTVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSC 63
G + L L L V T A+ T G +T T S+ P +K+ + PT T SC
Sbjct: 266 GVTALLALCLCLIFFIVKTHRRKAARTAVGRNDTHPTTGSASPKHQKKSKLHGPTETSSC 325
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 31.6 bits (70), Expect = 0.48
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 31 PGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRETFLKCFCRFINKGVFWASP--ILSS 88
P + ET+ SS S T P PT C +C N+ + SP I S+
Sbjct: 17 PQPQAETAVLPMSSALSVTAALGQPGPTLPPPCSPAPQQCPLSAANQASPFPSPSTIAST 76
Query: 89 VSDVPFPFSAQSGAGVP 105
+VPFP S+ SG +P
Sbjct: 77 PLEVPFPQSS-SGTALP 92
>gi|212274327 transmembrane protein 151B [Homo sapiens]
Length = 566
Score = 30.8 bits (68), Expect = 0.83
Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 15/147 (10%)
Query: 23 GSGHASSTPGGEKETSATQRSSV----PSSTEKNAIPAPTTTKSCRETFLKCFCRFINK- 77
G G PG +E +A ++ P+ E+ I T CRE+ KC +
Sbjct: 14 GGGGGGGGPGVSEELTAAAAAAAADEGPAREEQRPIQPSFTKSLCRESHWKCLLLSLLMY 73
Query: 78 ----GVFWASPILSSVSDVPFPFSAQSGAGV----PGWGIALLVLVCVLVALAIVYLIAL 129
V W +++V+ + F + Q + + P + + + L+ L VYL+
Sbjct: 74 GCLGAVAWCH--VTTVTRLTFSSAYQGNSLMYHDSPCSNGYVYIPLAFLLMLYAVYLVEC 131
Query: 130 AVCQCRRKNYGQLDIFPARDTYHPMSE 156
CQ R + ++D+ R+ M +
Sbjct: 132 WHCQARHELQHRVDVSSVRERVGRMQQ 158
>gi|239754269 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1531
Score = 30.0 bits (66), Expect = 1.4
Identities = 36/143 (25%), Positives = 54/143 (37%), Gaps = 20/143 (13%)
Query: 22 TGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRETFLKCFCRFINKGVFW 81
T S + + PG TS S++ +S+ +A TTT S RE F G
Sbjct: 1338 TASAASHTVPGIVLNTSGLGTSTMGASSTTSAHGVRTTTGSTRE---PTSSTFQETGPVS 1394
Query: 82 ASPILSSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQ 141
S+S P SG P W I L+ L V+ A+ + + L+ C
Sbjct: 1395 MGTNTVSMSHTPTNVIKPSGYLQP-WAIILISLAAVVAAVGL--SVGLSFC--------- 1442
Query: 142 LDIFPARDTYHPMSEYPTYHTHG 164
R+ + P+ Y+ HG
Sbjct: 1443 -----LRNLFFPLRYCGIYYPHG 1460
>gi|169168665 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1521
Score = 30.0 bits (66), Expect = 1.4
Identities = 36/143 (25%), Positives = 54/143 (37%), Gaps = 20/143 (13%)
Query: 22 TGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRETFLKCFCRFINKGVFW 81
T S + + PG TS S++ +S+ +A TTT S RE F G
Sbjct: 1328 TASAASHTVPGIVLNTSGLGTSTMGASSTTSAHGVRTTTGSTRE---PTSSTFQETGPVS 1384
Query: 82 ASPILSSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQ 141
S+S P SG P W I L+ L V+ A+ + + L+ C
Sbjct: 1385 MGTNTVSMSHTPTNVIKPSGYLQP-WAIILISLAAVVAAVGL--SVGLSFC--------- 1432
Query: 142 LDIFPARDTYHPMSEYPTYHTHG 164
R+ + P+ Y+ HG
Sbjct: 1433 -----LRNLFFPLRYCGIYYPHG 1450
>gi|113417486 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1612
Score = 30.0 bits (66), Expect = 1.4
Identities = 36/143 (25%), Positives = 54/143 (37%), Gaps = 20/143 (13%)
Query: 22 TGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRETFLKCFCRFINKGVFW 81
T S + + PG TS S++ +S+ +A TTT S RE F G
Sbjct: 1328 TASAASHTVPGIVLNTSGLGTSTMGASSTTSAHGVRTTTGSTRE---PTSSTFQETGPVS 1384
Query: 82 ASPILSSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQ 141
S+S P SG P W I L+ L V+ A+ + + L+ C
Sbjct: 1385 MGTNTVSMSHTPTNVIKPSGYLQP-WAIILISLAAVVAAVGL--SVGLSFC--------- 1432
Query: 142 LDIFPARDTYHPMSEYPTYHTHG 164
R+ + P+ Y+ HG
Sbjct: 1433 -----LRNLFFPLRYCGIYYPHG 1450
>gi|239740827 PREDICTED: hypothetical protein XP_002344067 [Homo
sapiens]
Length = 1521
Score = 30.0 bits (66), Expect = 1.4
Identities = 36/143 (25%), Positives = 54/143 (37%), Gaps = 20/143 (13%)
Query: 22 TGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRETFLKCFCRFINKGVFW 81
T S + + PG TS S++ +S+ +A TTT S RE F G
Sbjct: 1328 TASAASHTVPGIVLNTSGLGTSTMGASSTTSAHGVRTTTGSTRE---PTSSTFQETGPVS 1384
Query: 82 ASPILSSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQ 141
S+S P SG P W I L+ L V+ A+ + + L+ C
Sbjct: 1385 MGTNTVSMSHTPTNVIKPSGYLQP-WAIILISLAAVVAAVGL--SVGLSFC--------- 1432
Query: 142 LDIFPARDTYHPMSEYPTYHTHG 164
R+ + P+ Y+ HG
Sbjct: 1433 -----LRNLFFPLRYCGIYYPHG 1450
>gi|239740674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1531
Score = 30.0 bits (66), Expect = 1.4
Identities = 36/143 (25%), Positives = 54/143 (37%), Gaps = 20/143 (13%)
Query: 22 TGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRETFLKCFCRFINKGVFW 81
T S + + PG TS S++ +S+ +A TTT S RE F G
Sbjct: 1338 TASAASHTVPGIVLNTSGLGTSTMGASSTTSAHGVRTTTGSTRE---PTSSTFQETGPVS 1394
Query: 82 ASPILSSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQ 141
S+S P SG P W I L+ L V+ A+ + + L+ C
Sbjct: 1395 MGTNTVSMSHTPTNVIKPSGYLQP-WAIILISLAAVVAAVGL--SVGLSFC--------- 1442
Query: 142 LDIFPARDTYHPMSEYPTYHTHG 164
R+ + P+ Y+ HG
Sbjct: 1443 -----LRNLFFPLRYCGIYYPHG 1460
>gi|239740645 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1531
Score = 30.0 bits (66), Expect = 1.4
Identities = 36/143 (25%), Positives = 54/143 (37%), Gaps = 20/143 (13%)
Query: 22 TGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRETFLKCFCRFINKGVFW 81
T S + + PG TS S++ +S+ +A TTT S RE F G
Sbjct: 1338 TASAASHTVPGIVLNTSGLGTSTMGASSTTSAHGVRTTTGSTRE---PTSSTFQETGPVS 1394
Query: 82 ASPILSSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQ 141
S+S P SG P W I L+ L V+ A+ + + L+ C
Sbjct: 1395 MGTNTVSMSHTPTNVIKPSGYLQP-WAIILISLAAVVAAVGL--SVGLSFC--------- 1442
Query: 142 LDIFPARDTYHPMSEYPTYHTHG 164
R+ + P+ Y+ HG
Sbjct: 1443 -----LRNLFFPLRYCGIYYPHG 1460
>gi|239513940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1521
Score = 30.0 bits (66), Expect = 1.4
Identities = 36/143 (25%), Positives = 54/143 (37%), Gaps = 20/143 (13%)
Query: 22 TGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRETFLKCFCRFINKGVFW 81
T S + + PG TS S++ +S+ +A TTT S RE F G
Sbjct: 1328 TASAASHTVPGIVLNTSGLGTSTMGASSTTSAHGVRTTTGSTRE---PTSSTFQETGPVS 1384
Query: 82 ASPILSSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQ 141
S+S P SG P W I L+ L V+ A+ + + L+ C
Sbjct: 1385 MGTNTVSMSHTPTNVIKPSGYLQP-WAIILISLAAVVAAVGL--SVGLSFC--------- 1432
Query: 142 LDIFPARDTYHPMSEYPTYHTHG 164
R+ + P+ Y+ HG
Sbjct: 1433 -----LRNLFFPLRYCGIYYPHG 1450
>gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo
sapiens]
Length = 2036
Score = 30.0 bits (66), Expect = 1.4
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 1 MTPGTQSPFFLLLLLTVLTVVTGSGHASSTPGGE--KETSATQRSSVPSSTEKNAIPAPT 58
+ P + LL T + TGS H + +P G ++ +T S PSS K+ +PAP
Sbjct: 1276 LLPDNTTASGLLEASTPVHSSTGSPHTTLSPAGSTTRQGESTTFQSWPSS--KDTMPAPP 1333
Query: 59 TTKS 62
TT S
Sbjct: 1334 TTTS 1337
Score = 29.3 bits (64), Expect = 2.4
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
AS+T G E S T RS P ST A P TTT
Sbjct: 470 ASTTSSGVSEESTTSRSR-PGSTHTTAFPDSTTT 502
Score = 27.7 bits (60), Expect = 7.0
Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRE 65
AS T G E S T RS P ST PA TTT E
Sbjct: 748 ASMTSLGVGEESTTSRSQ-PGSTHSTVSPASTTTPGLSE 785
Score = 27.3 bits (59), Expect = 9.1
Identities = 16/34 (47%), Positives = 17/34 (50%)
Query: 27 ASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTT 60
AS+T G E S T SS STE P TTT
Sbjct: 776 ASTTTPGLSEESTTVYSSSRGSTETTVFPHSTTT 809
>gi|193788640 dopachrome tautomerase isoform 2 [Homo sapiens]
Length = 552
Score = 30.0 bits (66), Expect = 1.4
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 76 NKGVFWASPILSSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVALAIVYLIALAVCQCR 135
N+ +F S L + P S + PGW LLV++ LVAL ++++ LA Q R
Sbjct: 474 NEELFLTSDQLGYSYAIDLPVSVEE---TPGWPTTLLVVMGTLVALVGLFVL-LAFLQYR 529
Query: 136 RKNYG 140
R G
Sbjct: 530 RLRKG 534
>gi|6041667 dopachrome tautomerase isoform 1 [Homo sapiens]
Length = 519
Score = 30.0 bits (66), Expect = 1.4
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 76 NKGVFWASPILSSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVALAIVYLIALAVCQCR 135
N+ +F S L + P S + PGW LLV++ LVAL ++++ LA Q R
Sbjct: 441 NEELFLTSDQLGYSYAIDLPVSVEE---TPGWPTTLLVVMGTLVALVGLFVL-LAFLQYR 496
Query: 136 RKNYG 140
R G
Sbjct: 497 RLRKG 501
>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
Length = 1270
Score = 29.6 bits (65), Expect = 1.8
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 30 TPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRET 66
+P KE + T S P++T++ PAPTTTKS T
Sbjct: 381 SPTTPKEPAPTTTKSAPTTTKE---PAPTTTKSAPTT 414
Score = 28.9 bits (63), Expect = 3.1
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 19 TVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRET 66
T T AS+TP KE + T S P++ ++ PAPTTTKS T
Sbjct: 217 TPTTPKEPASTTP---KEPTPTTIKSAPTTPKE---PAPTTTKSAPTT 258
>gi|189181722 proteoglycan 4 isoform C [Homo sapiens]
Length = 1311
Score = 29.6 bits (65), Expect = 1.8
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 30 TPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRET 66
+P KE + T S P++T++ PAPTTTKS T
Sbjct: 422 SPTTPKEPAPTTTKSAPTTTKE---PAPTTTKSAPTT 455
Score = 28.9 bits (63), Expect = 3.1
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 19 TVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRET 66
T T AS+TP KE + T S P++ ++ PAPTTTKS T
Sbjct: 258 TPTTPKEPASTTP---KEPTPTTIKSAPTTPKE---PAPTTTKSAPTT 299
>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
Length = 1363
Score = 29.6 bits (65), Expect = 1.8
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 30 TPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRET 66
+P KE + T S P++T++ PAPTTTKS T
Sbjct: 474 SPTTPKEPAPTTTKSAPTTTKE---PAPTTTKSAPTT 507
Score = 28.9 bits (63), Expect = 3.1
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 19 TVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAIPAPTTTKSCRET 66
T T AS+TP KE + T S P++ ++ PAPTTTKS T
Sbjct: 310 TPTTPKEPASTTP---KEPTPTTIKSAPTTPKE---PAPTTTKSAPTT 351
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.131 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,547,662
Number of Sequences: 37866
Number of extensions: 383138
Number of successful extensions: 1952
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1794
Number of HSP's gapped (non-prelim): 193
length of query: 203
length of database: 18,247,518
effective HSP length: 97
effective length of query: 106
effective length of database: 14,574,516
effective search space: 1544898696
effective search space used: 1544898696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.