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Search of human proteins with 103485139
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|103485139 defensin, beta 104A precursor [Homo sapiens]
(72 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|103485139 defensin, beta 104A precursor [Homo sapiens] 154 1e-38
gi|103485137 defensin, beta 104B precursor [Homo sapiens] 154 1e-38
gi|50344744 beta-defensin 108B [Homo sapiens] 47 3e-06
gi|169166494 PREDICTED: hypothetical protein [Homo sapiens] 47 4e-06
gi|239753808 PREDICTED: hypothetical protein [Homo sapiens] 46 7e-06
gi|239748372 PREDICTED: hypothetical protein [Homo sapiens] 46 7e-06
gi|83582798 beta-defensin 115 [Homo sapiens] 40 4e-04
gi|16905373 beta-defensin 118 [Homo sapiens] 36 0.007
gi|82734223 beta-defensin 124 [Homo sapiens] 35 0.017
gi|58865339 defensin, beta 121 [Homo sapiens] 34 0.022
gi|82734214 beta-defensin 111 [Homo sapiens] 34 0.028
gi|22748617 defensin, beta 105A precursor [Homo sapiens] 33 0.037
gi|103485141 defensin, beta 105B precursor [Homo sapiens] 33 0.037
gi|83582800 beta-defensin 116 [Homo sapiens] 32 0.082
gi|21040279 defensin, beta 127 preproprotein [Homo sapiens] 32 0.14
gi|239749357 PREDICTED: hypothetical protein XP_002347009 [Homo ... 31 0.24
gi|149944551 defensin, beta 131 [Homo sapiens] 30 0.31
gi|18250304 beta defensin 129 precursor [Homo sapiens] 30 0.31
gi|169172906 PREDICTED: similar to defensin, beta 131 [Homo sapi... 30 0.41
gi|37704382 defensin, beta 119 isoform a precursor [Homo sapiens] 30 0.41
gi|190358539 mitochondrial glycerol 3-phosphate acyltransferase ... 28 1.2
gi|169202989 PREDICTED: similar to defensin, beta 131 [Homo sapi... 28 1.2
gi|169173154 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|169203494 PREDICTED: similar to defensin, beta 131 [Homo sapi... 28 1.2
gi|169172390 PREDICTED: similar to defensin, beta 131 [Homo sapi... 28 1.2
gi|169202282 PREDICTED: similar to defensin, beta 131 [Homo sapi... 28 1.2
gi|83582802 beta-defensin 128 [Homo sapiens] 28 1.2
gi|4503305 defensin, alpha 6 preproprotein [Homo sapiens] 28 1.5
gi|82734217 beta-defensin 112 [Homo sapiens] 28 1.5
gi|23503331 defensin, beta 123 precursor [Homo sapiens] 28 1.5
>gi|103485139 defensin, beta 104A precursor [Homo sapiens]
Length = 72
Score = 154 bits (389), Expect = 1e-38
Identities = 72/72 (100%), Positives = 72/72 (100%)
Query: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60
MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR
Sbjct: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60
Query: 61 KWDESLLNRTKP 72
KWDESLLNRTKP
Sbjct: 61 KWDESLLNRTKP 72
>gi|103485137 defensin, beta 104B precursor [Homo sapiens]
Length = 72
Score = 154 bits (389), Expect = 1e-38
Identities = 72/72 (100%), Positives = 72/72 (100%)
Query: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60
MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR
Sbjct: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60
Query: 61 KWDESLLNRTKP 72
KWDESLLNRTKP
Sbjct: 61 KWDESLLNRTKP 72
>gi|50344744 beta-defensin 108B [Homo sapiens]
Length = 73
Score = 47.0 bits (110), Expect = 3e-06
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60
M+ VLL AI + Q LP R +F+ IC CR C E +GRC N+ CCL
Sbjct: 1 MRIAVLLFAIFFFMSQVLPARGKFK--EICERPNGSCRDFCLETEIHVGRCLNSQPCCLP 58
Query: 61 KWDESLLNRTKP 72
+ + T P
Sbjct: 59 LGHQPRIESTTP 70
>gi|169166494 PREDICTED: hypothetical protein [Homo sapiens]
Length = 73
Score = 46.6 bits (109), Expect = 4e-06
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60
M+ VLL AI + Q LP R +F+ IC CR C E +GRC N+ CCL
Sbjct: 1 MRIAVLLFAIFFFMSQVLPARGKFK--EICERPNGSCRDFCLETEIHVGRCLNSRPCCLP 58
Query: 61 KWDESLLNRTKP 72
+ + T P
Sbjct: 59 LGHQPRIESTTP 70
>gi|239753808 PREDICTED: hypothetical protein [Homo sapiens]
Length = 83
Score = 45.8 bits (107), Expect = 7e-06
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 5 VLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRKWDE 64
VLL AI + Q LP R +F+ IC CR C E +GRC N+ CCL +
Sbjct: 15 VLLFAIFFFMSQVLPARGKFK--EICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLGHQ 72
Query: 65 SLLNRTKP 72
+ T P
Sbjct: 73 PRIESTTP 80
>gi|239748372 PREDICTED: hypothetical protein [Homo sapiens]
Length = 83
Score = 45.8 bits (107), Expect = 7e-06
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 5 VLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRKWDE 64
VLL AI + Q LP R +F+ IC CR C E +GRC N+ CCL +
Sbjct: 15 VLLFAIFFFMSQVLPARGKFK--EICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLGHQ 72
Query: 65 SLLNRTKP 72
+ T P
Sbjct: 73 PRIESTTP 80
>gi|83582798 beta-defensin 115 [Homo sapiens]
Length = 88
Score = 40.0 bits (92), Expect = 4e-04
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 5 VLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRKWDE 64
VL L + ++L Q P R C YGT RCRK C+ E + +C + CC+ K +
Sbjct: 17 VLALVVLVVLAQTAPDG----WIRRCYYGTGRCRKSCKEIERKKEKCGEKHICCVPKEKD 72
Query: 65 SL 66
L
Sbjct: 73 KL 74
>gi|16905373 beta-defensin 118 [Homo sapiens]
Length = 123
Score = 35.8 bits (81), Expect = 0.007
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCL 59
M+ L+L L + +LL Q +P S ++ C + CRK+C+ E C N ACC+
Sbjct: 1 MKLLLLALPMLVLLPQVIPAYSG---EKKCWNRSGHCRKQCKDGEAVKDTCKNLRACCI 56
>gi|82734223 beta-defensin 124 [Homo sapiens]
Length = 71
Score = 34.7 bits (78), Expect = 0.017
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 5 VLLLAISLLLYQDLPV-RSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCL 59
+LL ++LL+ +P RSEF+ C G C+ C QE + CP+ CCL
Sbjct: 4 LLLFLVALLVLGHVPSGRSEFKR---CWKGQGACQTYCTRQETYMHLCPDASLCCL 56
>gi|58865339 defensin, beta 121 [Homo sapiens]
Length = 76
Score = 34.3 bits (77), Expect = 0.022
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCL 59
M+ L+LLL ++LLL Q PV C + RCR C+ E C CC+
Sbjct: 1 MKLLLLLLTVTLLLAQVTPVMK-------CWGKSGRCRTTCKESEVYYILCKTEAKCCV 52
>gi|82734214 beta-defensin 111 [Homo sapiens]
Length = 67
Score = 33.9 bits (76), Expect = 0.028
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 19 PVRSEFELDRICGYGTARCRKKCRSQEYRIGRC--PNTYACCLRK 61
P +L R C G +C+ +C E RI C P T+ CCL++
Sbjct: 24 PEYGSLDLRRECRIGNGQCKNQCHENEIRIAYCIRPGTH-CCLQQ 67
>gi|22748617 defensin, beta 105A precursor [Homo sapiens]
Length = 78
Score = 33.5 bits (75), Expect = 0.037
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 23 EFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRK 61
EF + C G +CRK+C E G C + CC ++
Sbjct: 39 EFAVCESCKLGRGKCRKECLENEKPDGNCRLNFLCCRQR 77
>gi|103485141 defensin, beta 105B precursor [Homo sapiens]
Length = 78
Score = 33.5 bits (75), Expect = 0.037
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 23 EFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRK 61
EF + C G +CRK+C E G C + CC ++
Sbjct: 39 EFAVCESCKLGRGKCRKECLENEKPDGNCRLNFLCCRQR 77
>gi|83582800 beta-defensin 116 [Homo sapiens]
Length = 102
Score = 32.3 bits (72), Expect = 0.082
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 1 MQRLVLLLAISLLLYQDLP---VRSEFELDRI----CGYGTARCRKKCRSQEYRIGRCPN 53
M+ ++ +AI ++L Q P RS R C CR CR E + CPN
Sbjct: 4 MKPCLMTIAILMILAQKTPGGLFRSHNGKSREPWNPCELYQGMCRNACREYEIQYLTCPN 63
Query: 54 TYACCLR 60
CCL+
Sbjct: 64 DQKCCLK 70
>gi|21040279 defensin, beta 127 preproprotein [Homo sapiens]
Length = 99
Score = 31.6 bits (70), Expect = 0.14
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 6 LLLAISLLLYQDLPVRSEFELDRIC--GYGTARCRKKCRSQEYRIGRCPNTYACCLR-KW 62
L + I++LL+Q V + + C Y CRK CR E C N CCL K
Sbjct: 3 LFMIIAILLFQKPTVTEQLKK---CWNNYVQGHCRKICRVNEVPEALCENGRYCCLNIKE 59
Query: 63 DESLLNRTKP 72
E+ TKP
Sbjct: 60 LEACKKITKP 69
>gi|239749357 PREDICTED: hypothetical protein XP_002347009 [Homo
sapiens]
Length = 111
Score = 30.8 bits (68), Expect = 0.24
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 29 ICGYGTARCRKKCRSQEYRIGRCPNTYACCL 59
IC C+ C E +GRC N+ CCL
Sbjct: 65 ICERPNGSCQDFCLETEIHVGRCLNSRPCCL 95
>gi|149944551 defensin, beta 131 [Homo sapiens]
Length = 70
Score = 30.4 bits (67), Expect = 0.31
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60
M+ L + + L++ P RS D C CR KC + E+ I C + CC
Sbjct: 1 MRVLFFVFGVLSLMFTVPPARSFISNDE-CPSEYYHCRLKCNADEHAIRYCADFSICCKL 59
Query: 61 K 61
K
Sbjct: 60 K 60
>gi|18250304 beta defensin 129 precursor [Homo sapiens]
Length = 183
Score = 30.4 bits (67), Expect = 0.31
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYAC 57
M+ L + A +L YQ V +EF R C G RCR C E I +C C
Sbjct: 1 MKLLFPIFASLMLQYQ---VNTEFIGLRRCLMGLGRCRDHCNVDEKEIQKCKMKKCC 54
>gi|169172906 PREDICTED: similar to defensin, beta 131 [Homo
sapiens]
Length = 70
Score = 30.0 bits (66), Expect = 0.41
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 12 LLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRK 61
L L +P R F + C CR KC + E+ I C + CC K
Sbjct: 11 LSLMSTVPPRRSFISNDECPSEYYHCRLKCNADEHAITYCADFSICCKLK 60
>gi|37704382 defensin, beta 119 isoform a precursor [Homo sapiens]
Length = 84
Score = 30.0 bits (66), Expect = 0.41
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 5 VLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRKW 62
+L L +++LL + PV S C + CR C+ E C N +CCL+ +
Sbjct: 3 LLYLFLAILLAIEEPVISGKRHILRCMGNSGICRASCKKNEQPYLYCRNCQSCCLQSY 60
>gi|190358539 mitochondrial glycerol 3-phosphate acyltransferase
[Homo sapiens]
Length = 828
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 13/43 (30%)
Query: 43 SQEYRIGRC-------------PNTYACCLRKWDESLLNRTKP 72
S EY +GRC P + KW ESL++R +P
Sbjct: 19 SSEYSVGRCKHTSEEWGECGFRPTIFRSATLKWKESLMSRKRP 61
>gi|169202989 PREDICTED: similar to defensin, beta 131 [Homo
sapiens]
Length = 70
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 12 LLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRK 61
L L +P F + C CR KC + E+ I C + CC K
Sbjct: 11 LSLMSTVPPTRSFTSNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
>gi|169173154 PREDICTED: hypothetical protein [Homo sapiens]
Length = 70
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60
M+ L + + L+ P RS D C CR KC + E+ I C + CC
Sbjct: 1 MRVLFFVFGVLSLMSTVPPARSFISNDE-CPSEYYHCRLKCNADEHAIRYCADFSICCKL 59
Query: 61 K 61
K
Sbjct: 60 K 60
>gi|169203494 PREDICTED: similar to defensin, beta 131 [Homo
sapiens]
Length = 70
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 12 LLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRK 61
L L +P F + C CR KC + E+ I C + CC K
Sbjct: 11 LSLMSTVPPTRSFTSNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
>gi|169172390 PREDICTED: similar to defensin, beta 131 [Homo
sapiens]
Length = 70
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60
M+ L + + L+ P RS D C CR KC + E+ I C + CC
Sbjct: 1 MRVLFFVFGVLSLMSTVPPARSFISNDE-CPSEYYHCRLKCNADEHAIRYCADFSICCKL 59
Query: 61 K 61
K
Sbjct: 60 K 60
>gi|169202282 PREDICTED: similar to defensin, beta 131 [Homo
sapiens]
Length = 70
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 12 LLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRK 61
L L +P F + C CR KC + E+ I C + CC K
Sbjct: 11 LSLMSTVPPTRSFTSNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
>gi|83582802 beta-defensin 128 [Homo sapiens]
Length = 93
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 6 LLLAISLLLYQDLPVRSEFE--LDRICGYGTARCRKKCR-SQEYRIGRCPNTYACCLRKW 62
L L + +LL++ L + + +++ GY CRKKC+ + Y IG C + CC
Sbjct: 3 LFLVLIILLFEVLTDGARLKKCFNKVTGY----CRKKCKVGERYEIG-CLSGKLCCANDE 57
Query: 63 DE 64
+E
Sbjct: 58 EE 59
>gi|4503305 defensin, alpha 6 preproprotein [Homo sapiens]
Length = 100
Score = 28.1 bits (61), Expect = 1.5
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 34 TARCRKKCRSQEYRIGRCP----NTYACCL 59
T CR+ C S EY G C N CCL
Sbjct: 71 TCHCRRSCYSTEYSYGTCTVMGINHRFCCL 100
>gi|82734217 beta-defensin 112 [Homo sapiens]
Length = 113
Score = 28.1 bits (61), Expect = 1.5
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 36 RCRKKCRSQEYRIGRC--PNTYACCLRKWDESLLNRTKP 72
RC+ +C E+RI C P T+ CC+ + D + N P
Sbjct: 60 RCKNQCDDSEFRISYCARPTTH-CCVTECDPTDPNNWIP 97
>gi|23503331 defensin, beta 123 precursor [Homo sapiens]
Length = 67
Score = 28.1 bits (61), Expect = 1.5
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60
M+ L+L L + LLL Q P ++ C +CR +C +E C N CC++
Sbjct: 1 MKLLLLTLTVLLLLSQLTPGGTQR-----CWNLYGKCRYRCSKKERVYVYCINNKMCCVK 55
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.329 0.142 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,692,131
Number of Sequences: 37866
Number of extensions: 90597
Number of successful extensions: 270
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 40
length of query: 72
length of database: 18,247,518
effective HSP length: 45
effective length of query: 27
effective length of database: 16,543,548
effective search space: 446675796
effective search space used: 446675796
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.