BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|103485137 defensin, beta 104B precursor [Homo sapiens] (72 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|103485139 defensin, beta 104A precursor [Homo sapiens] 154 1e-38 gi|103485137 defensin, beta 104B precursor [Homo sapiens] 154 1e-38 gi|50344744 beta-defensin 108B [Homo sapiens] 47 3e-06 gi|169166494 PREDICTED: hypothetical protein [Homo sapiens] 47 4e-06 gi|239753808 PREDICTED: hypothetical protein [Homo sapiens] 46 7e-06 gi|239748372 PREDICTED: hypothetical protein [Homo sapiens] 46 7e-06 gi|83582798 beta-defensin 115 [Homo sapiens] 40 4e-04 gi|16905373 beta-defensin 118 [Homo sapiens] 36 0.007 gi|82734223 beta-defensin 124 [Homo sapiens] 35 0.017 gi|58865339 defensin, beta 121 [Homo sapiens] 34 0.022 gi|82734214 beta-defensin 111 [Homo sapiens] 34 0.028 gi|22748617 defensin, beta 105A precursor [Homo sapiens] 33 0.037 gi|103485141 defensin, beta 105B precursor [Homo sapiens] 33 0.037 gi|83582800 beta-defensin 116 [Homo sapiens] 32 0.082 gi|21040279 defensin, beta 127 preproprotein [Homo sapiens] 32 0.14 gi|239749357 PREDICTED: hypothetical protein XP_002347009 [Homo ... 31 0.24 gi|149944551 defensin, beta 131 [Homo sapiens] 30 0.31 gi|18250304 beta defensin 129 precursor [Homo sapiens] 30 0.31 gi|169172906 PREDICTED: similar to defensin, beta 131 [Homo sapi... 30 0.41 gi|37704382 defensin, beta 119 isoform a precursor [Homo sapiens] 30 0.41 gi|190358539 mitochondrial glycerol 3-phosphate acyltransferase ... 28 1.2 gi|169202989 PREDICTED: similar to defensin, beta 131 [Homo sapi... 28 1.2 gi|169173154 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2 gi|169203494 PREDICTED: similar to defensin, beta 131 [Homo sapi... 28 1.2 gi|169172390 PREDICTED: similar to defensin, beta 131 [Homo sapi... 28 1.2 gi|169202282 PREDICTED: similar to defensin, beta 131 [Homo sapi... 28 1.2 gi|83582802 beta-defensin 128 [Homo sapiens] 28 1.2 gi|4503305 defensin, alpha 6 preproprotein [Homo sapiens] 28 1.5 gi|82734217 beta-defensin 112 [Homo sapiens] 28 1.5 gi|23503331 defensin, beta 123 precursor [Homo sapiens] 28 1.5 >gi|103485139 defensin, beta 104A precursor [Homo sapiens] Length = 72 Score = 154 bits (389), Expect = 1e-38 Identities = 72/72 (100%), Positives = 72/72 (100%) Query: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR Sbjct: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60 Query: 61 KWDESLLNRTKP 72 KWDESLLNRTKP Sbjct: 61 KWDESLLNRTKP 72 >gi|103485137 defensin, beta 104B precursor [Homo sapiens] Length = 72 Score = 154 bits (389), Expect = 1e-38 Identities = 72/72 (100%), Positives = 72/72 (100%) Query: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR Sbjct: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60 Query: 61 KWDESLLNRTKP 72 KWDESLLNRTKP Sbjct: 61 KWDESLLNRTKP 72 >gi|50344744 beta-defensin 108B [Homo sapiens] Length = 73 Score = 47.0 bits (110), Expect = 3e-06 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Query: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60 M+ VLL AI + Q LP R +F+ IC CR C E +GRC N+ CCL Sbjct: 1 MRIAVLLFAIFFFMSQVLPARGKFK--EICERPNGSCRDFCLETEIHVGRCLNSQPCCLP 58 Query: 61 KWDESLLNRTKP 72 + + T P Sbjct: 59 LGHQPRIESTTP 70 >gi|169166494 PREDICTED: hypothetical protein [Homo sapiens] Length = 73 Score = 46.6 bits (109), Expect = 4e-06 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Query: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60 M+ VLL AI + Q LP R +F+ IC CR C E +GRC N+ CCL Sbjct: 1 MRIAVLLFAIFFFMSQVLPARGKFK--EICERPNGSCRDFCLETEIHVGRCLNSRPCCLP 58 Query: 61 KWDESLLNRTKP 72 + + T P Sbjct: 59 LGHQPRIESTTP 70 >gi|239753808 PREDICTED: hypothetical protein [Homo sapiens] Length = 83 Score = 45.8 bits (107), Expect = 7e-06 Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 2/68 (2%) Query: 5 VLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRKWDE 64 VLL AI + Q LP R +F+ IC CR C E +GRC N+ CCL + Sbjct: 15 VLLFAIFFFMSQVLPARGKFK--EICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLGHQ 72 Query: 65 SLLNRTKP 72 + T P Sbjct: 73 PRIESTTP 80 >gi|239748372 PREDICTED: hypothetical protein [Homo sapiens] Length = 83 Score = 45.8 bits (107), Expect = 7e-06 Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 2/68 (2%) Query: 5 VLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRKWDE 64 VLL AI + Q LP R +F+ IC CR C E +GRC N+ CCL + Sbjct: 15 VLLFAIFFFMSQVLPARGKFK--EICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLGHQ 72 Query: 65 SLLNRTKP 72 + T P Sbjct: 73 PRIESTTP 80 >gi|83582798 beta-defensin 115 [Homo sapiens] Length = 88 Score = 40.0 bits (92), Expect = 4e-04 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 5 VLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRKWDE 64 VL L + ++L Q P R C YGT RCRK C+ E + +C + CC+ K + Sbjct: 17 VLALVVLVVLAQTAPDG----WIRRCYYGTGRCRKSCKEIERKKEKCGEKHICCVPKEKD 72 Query: 65 SL 66 L Sbjct: 73 KL 74 >gi|16905373 beta-defensin 118 [Homo sapiens] Length = 123 Score = 35.8 bits (81), Expect = 0.007 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%) Query: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCL 59 M+ L+L L + +LL Q +P S ++ C + CRK+C+ E C N ACC+ Sbjct: 1 MKLLLLALPMLVLLPQVIPAYSG---EKKCWNRSGHCRKQCKDGEAVKDTCKNLRACCI 56 >gi|82734223 beta-defensin 124 [Homo sapiens] Length = 71 Score = 34.7 bits (78), Expect = 0.017 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Query: 5 VLLLAISLLLYQDLPV-RSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCL 59 +LL ++LL+ +P RSEF+ C G C+ C QE + CP+ CCL Sbjct: 4 LLLFLVALLVLGHVPSGRSEFKR---CWKGQGACQTYCTRQETYMHLCPDASLCCL 56 >gi|58865339 defensin, beta 121 [Homo sapiens] Length = 76 Score = 34.3 bits (77), Expect = 0.022 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 7/59 (11%) Query: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCL 59 M+ L+LLL ++LLL Q PV C + RCR C+ E C CC+ Sbjct: 1 MKLLLLLLTVTLLLAQVTPVMK-------CWGKSGRCRTTCKESEVYYILCKTEAKCCV 52 >gi|82734214 beta-defensin 111 [Homo sapiens] Length = 67 Score = 33.9 bits (76), Expect = 0.028 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Query: 19 PVRSEFELDRICGYGTARCRKKCRSQEYRIGRC--PNTYACCLRK 61 P +L R C G +C+ +C E RI C P T+ CCL++ Sbjct: 24 PEYGSLDLRRECRIGNGQCKNQCHENEIRIAYCIRPGTH-CCLQQ 67 >gi|22748617 defensin, beta 105A precursor [Homo sapiens] Length = 78 Score = 33.5 bits (75), Expect = 0.037 Identities = 13/39 (33%), Positives = 19/39 (48%) Query: 23 EFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRK 61 EF + C G +CRK+C E G C + CC ++ Sbjct: 39 EFAVCESCKLGRGKCRKECLENEKPDGNCRLNFLCCRQR 77 >gi|103485141 defensin, beta 105B precursor [Homo sapiens] Length = 78 Score = 33.5 bits (75), Expect = 0.037 Identities = 13/39 (33%), Positives = 19/39 (48%) Query: 23 EFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRK 61 EF + C G +CRK+C E G C + CC ++ Sbjct: 39 EFAVCESCKLGRGKCRKECLENEKPDGNCRLNFLCCRQR 77 >gi|83582800 beta-defensin 116 [Homo sapiens] Length = 102 Score = 32.3 bits (72), Expect = 0.082 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 7/67 (10%) Query: 1 MQRLVLLLAISLLLYQDLP---VRSEFELDRI----CGYGTARCRKKCRSQEYRIGRCPN 53 M+ ++ +AI ++L Q P RS R C CR CR E + CPN Sbjct: 4 MKPCLMTIAILMILAQKTPGGLFRSHNGKSREPWNPCELYQGMCRNACREYEIQYLTCPN 63 Query: 54 TYACCLR 60 CCL+ Sbjct: 64 DQKCCLK 70 >gi|21040279 defensin, beta 127 preproprotein [Homo sapiens] Length = 99 Score = 31.6 bits (70), Expect = 0.14 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 6/70 (8%) Query: 6 LLLAISLLLYQDLPVRSEFELDRIC--GYGTARCRKKCRSQEYRIGRCPNTYACCLR-KW 62 L + I++LL+Q V + + C Y CRK CR E C N CCL K Sbjct: 3 LFMIIAILLFQKPTVTEQLKK---CWNNYVQGHCRKICRVNEVPEALCENGRYCCLNIKE 59 Query: 63 DESLLNRTKP 72 E+ TKP Sbjct: 60 LEACKKITKP 69 >gi|239749357 PREDICTED: hypothetical protein XP_002347009 [Homo sapiens] Length = 111 Score = 30.8 bits (68), Expect = 0.24 Identities = 12/31 (38%), Positives = 15/31 (48%) Query: 29 ICGYGTARCRKKCRSQEYRIGRCPNTYACCL 59 IC C+ C E +GRC N+ CCL Sbjct: 65 ICERPNGSCQDFCLETEIHVGRCLNSRPCCL 95 >gi|149944551 defensin, beta 131 [Homo sapiens] Length = 70 Score = 30.4 bits (67), Expect = 0.31 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60 M+ L + + L++ P RS D C CR KC + E+ I C + CC Sbjct: 1 MRVLFFVFGVLSLMFTVPPARSFISNDE-CPSEYYHCRLKCNADEHAIRYCADFSICCKL 59 Query: 61 K 61 K Sbjct: 60 K 60 >gi|18250304 beta defensin 129 precursor [Homo sapiens] Length = 183 Score = 30.4 bits (67), Expect = 0.31 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYAC 57 M+ L + A +L YQ V +EF R C G RCR C E I +C C Sbjct: 1 MKLLFPIFASLMLQYQ---VNTEFIGLRRCLMGLGRCRDHCNVDEKEIQKCKMKKCC 54 >gi|169172906 PREDICTED: similar to defensin, beta 131 [Homo sapiens] Length = 70 Score = 30.0 bits (66), Expect = 0.41 Identities = 16/50 (32%), Positives = 21/50 (42%) Query: 12 LLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRK 61 L L +P R F + C CR KC + E+ I C + CC K Sbjct: 11 LSLMSTVPPRRSFISNDECPSEYYHCRLKCNADEHAITYCADFSICCKLK 60 >gi|37704382 defensin, beta 119 isoform a precursor [Homo sapiens] Length = 84 Score = 30.0 bits (66), Expect = 0.41 Identities = 17/58 (29%), Positives = 27/58 (46%) Query: 5 VLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRKW 62 +L L +++LL + PV S C + CR C+ E C N +CCL+ + Sbjct: 3 LLYLFLAILLAIEEPVISGKRHILRCMGNSGICRASCKKNEQPYLYCRNCQSCCLQSY 60 >gi|190358539 mitochondrial glycerol 3-phosphate acyltransferase [Homo sapiens] Length = 828 Score = 28.5 bits (62), Expect = 1.2 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 13/43 (30%) Query: 43 SQEYRIGRC-------------PNTYACCLRKWDESLLNRTKP 72 S EY +GRC P + KW ESL++R +P Sbjct: 19 SSEYSVGRCKHTSEEWGECGFRPTIFRSATLKWKESLMSRKRP 61 >gi|169202989 PREDICTED: similar to defensin, beta 131 [Homo sapiens] Length = 70 Score = 28.5 bits (62), Expect = 1.2 Identities = 15/50 (30%), Positives = 20/50 (40%) Query: 12 LLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRK 61 L L +P F + C CR KC + E+ I C + CC K Sbjct: 11 LSLMSTVPPTRSFTSNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60 >gi|169173154 PREDICTED: hypothetical protein [Homo sapiens] Length = 70 Score = 28.5 bits (62), Expect = 1.2 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60 M+ L + + L+ P RS D C CR KC + E+ I C + CC Sbjct: 1 MRVLFFVFGVLSLMSTVPPARSFISNDE-CPSEYYHCRLKCNADEHAIRYCADFSICCKL 59 Query: 61 K 61 K Sbjct: 60 K 60 >gi|169203494 PREDICTED: similar to defensin, beta 131 [Homo sapiens] Length = 70 Score = 28.5 bits (62), Expect = 1.2 Identities = 15/50 (30%), Positives = 20/50 (40%) Query: 12 LLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRK 61 L L +P F + C CR KC + E+ I C + CC K Sbjct: 11 LSLMSTVPPTRSFTSNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60 >gi|169172390 PREDICTED: similar to defensin, beta 131 [Homo sapiens] Length = 70 Score = 28.5 bits (62), Expect = 1.2 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60 M+ L + + L+ P RS D C CR KC + E+ I C + CC Sbjct: 1 MRVLFFVFGVLSLMSTVPPARSFISNDE-CPSEYYHCRLKCNADEHAIRYCADFSICCKL 59 Query: 61 K 61 K Sbjct: 60 K 60 >gi|169202282 PREDICTED: similar to defensin, beta 131 [Homo sapiens] Length = 70 Score = 28.5 bits (62), Expect = 1.2 Identities = 15/50 (30%), Positives = 20/50 (40%) Query: 12 LLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRK 61 L L +P F + C CR KC + E+ I C + CC K Sbjct: 11 LSLMSTVPPTRSFTSNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60 >gi|83582802 beta-defensin 128 [Homo sapiens] Length = 93 Score = 28.5 bits (62), Expect = 1.2 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 8/62 (12%) Query: 6 LLLAISLLLYQDLPVRSEFE--LDRICGYGTARCRKKCR-SQEYRIGRCPNTYACCLRKW 62 L L + +LL++ L + + +++ GY CRKKC+ + Y IG C + CC Sbjct: 3 LFLVLIILLFEVLTDGARLKKCFNKVTGY----CRKKCKVGERYEIG-CLSGKLCCANDE 57 Query: 63 DE 64 +E Sbjct: 58 EE 59 >gi|4503305 defensin, alpha 6 preproprotein [Homo sapiens] Length = 100 Score = 28.1 bits (61), Expect = 1.5 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 4/30 (13%) Query: 34 TARCRKKCRSQEYRIGRCP----NTYACCL 59 T CR+ C S EY G C N CCL Sbjct: 71 TCHCRRSCYSTEYSYGTCTVMGINHRFCCL 100 >gi|82734217 beta-defensin 112 [Homo sapiens] Length = 113 Score = 28.1 bits (61), Expect = 1.5 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Query: 36 RCRKKCRSQEYRIGRC--PNTYACCLRKWDESLLNRTKP 72 RC+ +C E+RI C P T+ CC+ + D + N P Sbjct: 60 RCKNQCDDSEFRISYCARPTTH-CCVTECDPTDPNNWIP 97 >gi|23503331 defensin, beta 123 precursor [Homo sapiens] Length = 67 Score = 28.1 bits (61), Expect = 1.5 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%) Query: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLR 60 M+ L+L L + LLL Q P ++ C +CR +C +E C N CC++ Sbjct: 1 MKLLLLTLTVLLLLSQLTPGGTQR-----CWNLYGKCRYRCSKKERVYVYCINNKMCCVK 55 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.329 0.142 0.464 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,692,131 Number of Sequences: 37866 Number of extensions: 90597 Number of successful extensions: 270 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 235 Number of HSP's gapped (non-prelim): 40 length of query: 72 length of database: 18,247,518 effective HSP length: 45 effective length of query: 27 effective length of database: 16,543,548 effective search space: 446675796 effective search space used: 446675796 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.